Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:09:28 (962580): wrapper (7.7.26015): starting
00:09:28 (962580): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 00:09:28] Arguments: --nthreads 4
[2025-06-05 00:09:28] Threads: 4
[2025-06-05 00:09:28] Checking for CVMFS
[2025-06-05 00:09:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:09:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:09:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:09:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:09:29] 2.9.2.0 9870 2472 92000 146795 3 56 30632081 36864001 0 130560 0 2535135 99.994 541642 18880 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-05 00:09:29] CVMFS is ok
[2025-06-05 00:09:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:09:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:09:29] Further information can be found at the LHC@home message board.
[2025-06-05 00:09:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:09:29] Checking for apptainer binary...
[2025-06-05 00:09:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:09:29] Running /usr/bin/apptainer --version
[2025-06-05 00:09:29] apptainer version 1.3.6-6.1
[2025-06-05 00:09:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:09:29] atlasA139
[2025-06-05 00:09:29] apptainer works
[2025-06-05 00:09:29] Set ATHENA_PROC_NUMBER=4
[2025-06-05 00:09:29] Set ATHENA_CORE_NUMBER=4
[2025-06-05 00:09:29] Starting ATLAS job with PandaID=6667433492
[2025-06-05 00:09:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:39:25]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:39:25]  status_code=0
[2025-06-05 01:39:25]  storage_token=
[2025-06-05 01:39:25]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6667433492/log.44871837._071716.job.log.tgz.1
[2025-06-05 01:39:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/57/3c/log.44871837._071716.job.log.tgz.1
[2025-06-05 01:39:25]  workdir=None
[2025-06-05 01:39:25] ]
[2025-06-05 01:39:25] 2025-06-04 23:39:01,211 | INFO     | transferring file log.44871837._071716.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6667433492/log.44871837._071716.job.log.tgz.1 to /local/data/boinc/
[2025-06-05 01:39:25] 2025-06-04 23:39:01,211 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6667433492/log.44871837._071716.job.log.tgz.1 /local/data/boinc/slots/0/log.44871837._0717
[2025-06-05 01:39:25] 2025-06-04 23:39:01,229 | INFO     | adding to output.list: log.44871837._071716.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/57/3c/log.44871837._071716.job.log.tg
[2025-06-05 01:39:25] 2025-06-04 23:39:01,229 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 01:39:25] 2025-06-04 23:39:01,229 | INFO     | summary of transferred files:
[2025-06-05 01:39:25] 2025-06-04 23:39:01,229 | INFO     |  -- lfn=log.44871837._071716.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 01:39:25] 2025-06-04 23:39:01,229 | INFO     | stage-out finished correctly
[2025-06-05 01:39:25] 2025-06-04 23:39:01,661 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 01:39:25] 2025-06-04 23:39:01,894 | INFO     | job 6667433492 has state=finished
[2025-06-05 01:39:25] 2025-06-04 23:39:01,894 | INFO     | preparing for final server update for job 6667433492 in state='finished'
[2025-06-05 01:39:25] 2025-06-04 23:39:01,894 | INFO     | this job has now completed (state=finished)
[2025-06-05 01:39:25] 2025-06-04 23:39:01,894 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 01:39:25] 2025-06-04 23:39:01,894 | INFO     | log transfer has been attempted: DONE
[2025-06-05 01:39:25] 2025-06-04 23:39:01,895 | INFO     | job 6667433492 has finished - writing final server update
[2025-06-05 01:39:25] 2025-06-04 23:39:01,895 | INFO     | total number of processed events: 400 (read)
[2025-06-05 01:39:25] 2025-06-04 23:39:01,896 | INFO     | executing command: lscpu
[2025-06-05 01:39:25] 2025-06-04 23:39:01,916 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 01:39:25] 2025-06-04 23:39:02,256 | WARNING  | process 972949 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 01:39:25] 2025-06-04 23:39:02,256 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6667433492/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:39:25] 2025-06-04 23:39:02,257 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6667433492/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:39:25] 2025-06-04 23:39:02,257 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2240676 B
[2025-06-05 01:39:25] 2025-06-04 23:39:02,257 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16032 B
[2025-06-05 01:39:25] 2025-06-04 23:39:02,257 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 01:39:25] 2025-06-04 23:39:06,533 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 01:39:25] 2025-06-04 23:39:06,533 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6667433492/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:39:25] 2025-06-04 23:39:06,537 | INFO     | extracted standard info from prmon json
[2025-06-05 01:39:25] 2025-06-04 23:39:06,537 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:39:25] 2025-06-04 23:39:06,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:39:25] 2025-06-04 23:39:06,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:39:25] 2025-06-04 23:39:06,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:39:25] 2025-06-04 23:39:06,538 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | sum of square deviations: 164765880.0
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | sum of deviations: -5247652856.000001
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | mean x: 1749077744.0
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | mean y: 2496421.4320987654
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | -- intersect: 55709131913.36549
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | intersect: 55709131913.36549
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | chi2: 0.03141216877440503
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | -- intersect: 55709131913.36549
[2025-06-05 01:39:25] 2025-06-04 23:39:06,539 | INFO     | current memory leak: -31.85 B/s (using 81 data points, chi2=0.03)
[2025-06-05 01:39:25] 2025-06-04 23:39:06,540 | INFO     | ..............................
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . Timing measurements:
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . get job = 0 s
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . initial setup = 1 s
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . payload setup = 4 s
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . stage-in = 0 s
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . payload execution = 5341 s
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . stage-out = 0 s
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | . log creation = 0 s
[2025-06-05 01:39:25] 2025-06-04 23:39:06,541 | INFO     | ..............................
[2025-06-05 01:39:25] 2025-06-04 23:39:06,560 | INFO     | sufficient remaining disk space (326071484416 B)
[2025-06-05 01:39:25] 2025-06-04 23:39:06,576 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 01:39:25] 2025-06-04 23:39:06,583 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6667433492: 2541413 B (within 2537553920 B limit)
[2025-06-05 01:39:25] 2025-06-04 23:39:06,583 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6667433492/HITS.44871837._071716.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 01:39:25] 2025-06-04 23:39:06,583 | INFO     | total size of present files: 0 B (workdir size: 2541413 B)
[2025-06-05 01:39:25] 2025-06-04 23:39:06,583 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6667433492/HITS.44871837._071716.pool.root.1 since it does not exist
[2025-06-05 01:39:25] 2025-06-04 23:39:06,634 | INFO     | number of running child processes to parent process 972949: 1
[2025-06-05 01:39:25] 2025-06-04 23:39:06,634 | INFO     | maximum number of monitored processes: 6
[2025-06-05 01:39:25] 2025-06-04 23:39:06,634 | INFO     | aborting job monitoring since job object (job id=6667433492) has expired
[2025-06-05 01:39:25] 2025-06-04 23:39:07,063 | INFO     | 
[2025-06-05 01:39:25] 2025-06-04 23:39:07,063 | INFO     | job summary report
[2025-06-05 01:39:25] 2025-06-04 23:39:07,063 | INFO     | --------------------------------------------------
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | PanDA job id: 6667433492
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | task id: 44871837
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | errors: (none)
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | pilot state: finished 
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | transexitcode: 0
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | exeerrorcode: 0
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | exeerrordiag: 
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | exitcode: 0
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | exitmsg: OK
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | cpuconsumptiontime: 20218 s
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | nevents: 400
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | neventsw: 0
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | pid: 972949
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | pgrp: 972949
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | corecount: 4
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | event service: False
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | sizes: {0: 2397224, 1: 2397423, 4: 2397629, 11: 2397657, 5350: 2424182, 5351: 2433313, 5356: 2433427}
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | --------------------------------------------------
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | 
[2025-06-05 01:39:25] 2025-06-04 23:39:07,064 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:39:25] 2025-06-04 23:39:07,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,085 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:39:25] 2025-06-04 23:39:07,085 | INFO     | job 6667433492 has completed (purged errors)
[2025-06-05 01:39:25] 2025-06-04 23:39:07,085 | INFO     | overall cleanup function is called
[2025-06-05 01:39:25] 2025-06-04 23:39:08,091 | INFO     | --- collectZombieJob: --- 10, [972949]
[2025-06-05 01:39:25] 2025-06-04 23:39:08,091 | INFO     | zombie collector waiting for pid 972949
[2025-06-05 01:39:25] 2025-06-04 23:39:08,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:39:25] 2025-06-04 23:39:08,091 | INFO     | collected zombie processes
[2025-06-05 01:39:25] 2025-06-04 23:39:08,091 | INFO     | will attempt to kill all subprocesses of pid=972949
[2025-06-05 01:39:25] 2025-06-04 23:39:08,143 | INFO     | process IDs to be killed: [972949] (in reverse order)
[2025-06-05 01:39:25] 2025-06-04 23:39:08,178 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:39:25] 2025-06-04 23:39:08,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:39:25] 2025-06-04 23:39:08,180 | INFO     | did not find any defunct processes belonging to 972949
[2025-06-05 01:39:25] 2025-06-04 23:39:08,182 | INFO     | did not find any defunct processes belonging to 972949
[2025-06-05 01:39:25] 2025-06-04 23:39:08,182 | INFO     | ready for new job
[2025-06-05 01:39:25] 2025-06-04 23:39:08,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:39:25] 2025-06-04 23:39:08,183 | INFO     | **************************************
[2025-06-05 01:39:25] 2025-06-04 23:39:08,183 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:39:25] 2025-06-04 23:39:08,183 | INFO     | **************************************
[2025-06-05 01:39:25] 2025-06-04 23:39:08,183 | INFO     | 
[2025-06-05 01:39:25] 2025-06-04 23:39:08,183 | INFO     | architecture information:
[2025-06-05 01:39:25] 2025-06-04 23:39:08,183 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:39:25] 2025-06-04 23:39:08,196 | INFO     | cat /etc/os-release:
[2025-06-05 01:39:25] NAME="CentOS Linux"
[2025-06-05 01:39:25] VERSION="7 (Core)"
[2025-06-05 01:39:25] ID="centos"
[2025-06-05 01:39:25] ID_LIKE="rhel fedora"
[2025-06-05 01:39:25] VERSION_ID="7"
[2025-06-05 01:39:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:39:25] ANSI_COLOR="0;31"
[2025-06-05 01:39:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:39:25] HOME_URL="https://www.centos.org/"
[2025-06-05 01:39:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:39:25] 
[2025-06-05 01:39:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:39:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:39:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:39:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:39:25] 
[2025-06-05 01:39:25] 2025-06-04 23:39:08,196 | INFO     | **************************************
[2025-06-05 01:39:25] 2025-06-04 23:39:08,700 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 01:39:25] 2025-06-04 23:39:08,717 | INFO     | sufficient remaining disk space (326074630144 B)
[2025-06-05 01:39:25] 2025-06-04 23:39:08,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:39:25] 2025-06-04 23:39:08,717 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:39:25] 2025-06-04 23:39:08,717 | INFO     | update_server=False
[2025-06-05 01:39:25] 2025-06-04 23:39:08,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:39:25] 2025-06-04 23:39:09,137 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 01:39:25] 2025-06-04 23:39:09,138 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 01:39:25] 2025-06-04 23:39:09,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:39:25] 2025-06-04 23:39:09,138 | INFO     | will abort loop
[2025-06-05 01:39:25] 2025-06-04 23:39:09,203 | INFO     | all payload control threads have been joined
[2025-06-05 01:39:25] 2025-06-04 23:39:09,278 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:39:25] 2025-06-04 23:39:09,353 | INFO     | all data control threads have been joined
[2025-06-05 01:39:25] 2025-06-04 23:39:09,402 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:39:25] 2025-06-04 23:39:09,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:39:25] 2025-06-04 23:39:09,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:39:25] 2025-06-04 23:39:09,723 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:09,754 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:09,840 | INFO     | all job control threads have been joined
[2025-06-05 01:39:25] 2025-06-04 23:39:09,905 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,057 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,138 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,209 | INFO     | [payload] control thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,359 | INFO     | [data] control thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,544 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,822 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,845 | INFO     | [job] control thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:10,956 | INFO     | [job] validate thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:11,113 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:11,284 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:11,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:39:25] 2025-06-04 23:39:12,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:39:25] 2025-06-04 23:39:12,600 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:16,216 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:19,225 | INFO     | job.realtimelogging is not enabled
[2025-06-05 01:39:25] 2025-06-04 23:39:20,230 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:39:25] 2025-06-04 23:39:20,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140685593208640)>', '<ExcThread(monitor, started 140684271023872)>']
[2025-06-05 01:39:25] 2025-06-04 23:39:20,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:39:25] 2025-06-04 23:39:20,456 | INFO     | [monitor] control thread has ended
[2025-06-05 01:39:25] 2025-06-04 23:39:25,425 | INFO     | all workflow threads have been joined
[2025-06-05 01:39:25] 2025-06-04 23:39:25,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:39:25] 2025-06-04 23:39:25,425 | INFO     | traces error code: 0
[2025-06-05 01:39:25] 2025-06-04 23:39:25,426 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:39:25] 2025-06-04 23:39:25,494 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:39:25] 2025-06-04 23:39:25,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:39:25] 2025-06-04 23:39:25,503 [wrapper] pilotpid: 966296
[2025-06-05 01:39:25] 2025-06-04 23:39:25,506 [wrapper] Pilot exit status: 0
[2025-06-05 01:39:25] 2025-06-04 23:39:25,517 [wrapper] pandaids: 6667433492
[2025-06-05 01:39:25] 2025-06-04 23:39:25,541 [wrapper] cleanup supervisor_pilot  985448 966297
[2025-06-05 01:39:25] 2025-06-04 23:39:25,545 [wrapper] Test setup, not cleaning
[2025-06-05 01:39:25] 2025-06-04 23:39:25,549 [wrapper] apfmon messages muted
[2025-06-05 01:39:25] 2025-06-04 23:39:25,553 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:39:25] 2025-06-04 23:39:25,556 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:39:25]  *** Error codes and diagnostics ***
[2025-06-05 01:39:25]     "exeErrorCode": 0,
[2025-06-05 01:39:25]     "exeErrorDiag": "",
[2025-06-05 01:39:25]     "pilotErrorCode": 0,
[2025-06-05 01:39:25]     "pilotErrorDiag": "",
[2025-06-05 01:39:25]  *** Listing of results directory ***
[2025-06-05 01:39:25] total 411276
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc    495897 May 27 20:37 pilot3.tar.gz
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc      5111 May 27 20:40 queuedata.json
[2025-06-05 01:39:25] -rwx------ 1 boinc boinc     37140 May 27 20:42 runpilot2-wrapper.sh
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc       100 Jun  5 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:39:25] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 00:09 run_atlas
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc       105 Jun  5 00:09 job.xml
[2025-06-05 01:39:25] -rw-r--r-- 2 boinc boinc 222131669 Jun  5 00:09 EVNT.44871834._002815.pool.root.1
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc      6856 Jun  5 00:09 init_data.xml
[2025-06-05 01:39:25] drwxrwx--x 2 boinc boinc      4096 Jun  5 00:09 shared
[2025-06-05 01:39:25] -rw-r--r-- 2 boinc boinc    508878 Jun  5 00:09 input.tar.gz
[2025-06-05 01:39:25] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:09 start_atlas.sh
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc         0 Jun  5 00:09 boinc_lockfile
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc      2559 Jun  5 00:09 pandaJob.out
[2025-06-05 01:39:25] -rw------- 1 boinc boinc    987032 Jun  5 00:09 agis_schedconf.cvmfs.json
[2025-06-05 01:39:25] -rw------- 1 boinc boinc   1598969 Jun  5 00:09 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:39:25] drwx------ 4 boinc boinc      4096 Jun  5 00:09 pilot3
[2025-06-05 01:39:25] -rw------- 1 boinc boinc 193664447 Jun  5 01:38 HITS.44871837._071716.pool.root.1
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc       529 Jun  5 01:38 boinc_task_state.xml
[2025-06-05 01:39:25] -rw------- 1 boinc boinc      1020 Jun  5 01:38 memory_monitor_summary.json
[2025-06-05 01:39:25] -rw------- 1 boinc boinc    243658 Jun  5 01:39 log.44871837._071716.job.log.tgz.1
[2025-06-05 01:39:25] -rw------- 1 boinc boinc      7667 Jun  5 01:39 heartbeat.json
[2025-06-05 01:39:25] -rw------- 1 boinc boinc        95 Jun  5 01:39 pilot_heartbeat.json
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc      8192 Jun  5 01:39 boinc_mmap_file
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc        27 Jun  5 01:39 wrapper_checkpoint.txt
[2025-06-05 01:39:25] -rw------- 1 boinc boinc      4615 Jun  5 01:39 pilotlog.txt
[2025-06-05 01:39:25] -rw------- 1 boinc boinc    515486 Jun  5 01:39 log.44871837._071716.job.log.1
[2025-06-05 01:39:25] -rw------- 1 boinc boinc       357 Jun  5 01:39 output.list
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc       620 Jun  5 01:39 runtime_log
[2025-06-05 01:39:25] -rw------- 1 boinc boinc    778240 Jun  5 01:39 result.tar.gz
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc      8748 Jun  5 01:39 runtime_log.err
[2025-06-05 01:39:25] -rw------- 1 boinc boinc       661 Jun  5 01:39 VFrLDmkQEe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg7ZKDmgbr8Wn.diag
[2025-06-05 01:39:25] -rw-r--r-- 1 boinc boinc     22258 Jun  5 01:39 stderr.txt
[2025-06-05 01:39:25] HITS file was successfully produced:
[2025-06-05 01:39:25] -rw------- 1 boinc boinc 193664447 Jun  5 01:38 shared/HITS.pool.root.1
[2025-06-05 01:39:25]  *** Contents of shared directory: ***
[2025-06-05 01:39:25] total 407340
[2025-06-05 01:39:25] -rw-r--r-- 2 boinc boinc 222131669 Jun  5 00:09 ATLAS.root_0
[2025-06-05 01:39:25] -rw-r--r-- 2 boinc boinc    508878 Jun  5 00:09 input.tar.gz
[2025-06-05 01:39:25] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:09 start_atlas.sh
[2025-06-05 01:39:25] -rw------- 1 boinc boinc 193664447 Jun  5 01:38 HITS.pool.root.1
[2025-06-05 01:39:25] -rw------- 1 boinc boinc    778240 Jun  5 01:39 result.tar.gz
01:39:27 (962580): run_atlas exited; CPU time 20242.051539
01:39:27 (962580): called boinc_finish(0)

</stderr_txt>
]]>

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