Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:44:01 (25755): wrapper (7.7.26015): starting
08:44:01 (25755): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:44:01] Arguments: --nthreads 8
[2025-06-05 08:44:01] Threads: 8
[2025-06-05 08:44:01] Checking for CVMFS
[2025-06-05 08:44:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:44:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:44:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:44:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:44:04] 2.11.2.0 2191 34291 92460 146809 0 16 15587943 25165825 3535 130560 0 17463768 99.786 20831312 2388 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 08:44:04] CVMFS is ok
[2025-06-05 08:44:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:44:04] Checking for apptainer binary...
[2025-06-05 08:44:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:44:04] Running /usr/bin/apptainer --version
[2025-06-05 08:44:04] apptainer version 1.3.2-1.el7
[2025-06-05 08:44:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:44:12] cg-vwn409.simple-grid.lan
[2025-06-05 08:44:12] apptainer works
[2025-06-05 08:44:12] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:44:12] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:44:12] Starting ATLAS job with PandaID=6677579446
[2025-06-05 08:44:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:50:53]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:50:53] 2025-06-05 10:30:38,559 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:50:53] 2025-06-05 10:30:38,559 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:50:53] 2025-06-05 10:30:38,559 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:50:53] 2025-06-05 10:30:38,559 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:50:53] 2025-06-05 10:30:38,565 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:50:53] 2025-06-05 10:30:38,566 | INFO     | sum of square deviations: 2871616632.5
[2025-06-05 12:50:53] 2025-06-05 10:30:38,567 | INFO     | sum of deviations: 68369646405.50001
[2025-06-05 12:50:53] 2025-06-05 10:30:38,568 | INFO     | mean x: 1749112918.5
[2025-06-05 12:50:53] 2025-06-05 10:30:38,568 | INFO     | mean y: 2414566.519047619
[2025-06-05 12:50:53] 2025-06-05 10:30:38,568 | INFO     | -- intersect: -41641804375.41771
[2025-06-05 12:50:53] 2025-06-05 10:30:38,568 | INFO     | intersect: -41641804375.41771
[2025-06-05 12:50:53] 2025-06-05 10:30:38,568 | INFO     | chi2: 6.495288963841367
[2025-06-05 12:50:53] 2025-06-05 10:30:38,569 | INFO     | sum of square deviations: 2671343110.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,573 | INFO     | sum of deviations: 80709560977.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,574 | INFO     | mean x: 1749112766.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,574 | INFO     | mean y: 2423753.795121951
[2025-06-05 12:50:53] 2025-06-05 10:30:38,574 | INFO     | -- intersect: -52843698077.07899
[2025-06-05 12:50:53] 2025-06-05 10:30:38,574 | INFO     | intersect: -52843698077.07899
[2025-06-05 12:50:53] 2025-06-05 10:30:38,574 | INFO     | chi2: 5.742435660358333
[2025-06-05 12:50:53] 2025-06-05 10:30:38,575 | INFO     | current chi2=5.742435660358333 (change=11.59075920523466 %)
[2025-06-05 12:50:53] 2025-06-05 10:30:38,575 | INFO     | right removable region: 204
[2025-06-05 12:50:53] 2025-06-05 10:30:38,575 | INFO     | sum of square deviations: 2671343110.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,577 | INFO     | sum of deviations: -3936971293.000004
[2025-06-05 12:50:53] 2025-06-05 10:30:38,577 | INFO     | mean x: 1749113071.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,577 | INFO     | mean y: 2469577.9707317073
[2025-06-05 12:50:53] 2025-06-05 10:30:38,577 | INFO     | -- intersect: 2580276944.9690046
[2025-06-05 12:50:53] 2025-06-05 10:30:38,577 | INFO     | intersect: 2580276944.9690046
[2025-06-05 12:50:53] 2025-06-05 10:30:38,577 | INFO     | chi2: 1.6561259445203058
[2025-06-05 12:50:53] 2025-06-05 10:30:38,577 | INFO     | current chi2=1.6561259445203058 (change=74.50265948536246 %)
[2025-06-05 12:50:53] 2025-06-05 10:30:38,578 | INFO     | sum of square deviations: 2480604650.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,579 | INFO     | sum of deviations: -26348847825.000008
[2025-06-05 12:50:53] 2025-06-05 10:30:38,580 | INFO     | mean x: 1749113223.5
[2025-06-05 12:50:53] 2025-06-05 10:30:38,580 | INFO     | mean y: 2487312.82
[2025-06-05 12:50:53] 2025-06-05 10:30:38,580 | INFO     | -- intersect: 18581472946.301228
[2025-06-05 12:50:53] 2025-06-05 10:30:38,580 | INFO     | intersect: 18581472946.301228
[2025-06-05 12:50:53] 2025-06-05 10:30:38,580 | INFO     | chi2: 0.9596797846544773
[2025-06-05 12:50:53] 2025-06-05 10:30:38,580 | INFO     | current chi2=0.9596797846544773 (change=42.052729272806175 %)
[2025-06-05 12:50:53] 2025-06-05 10:30:38,581 | INFO     | sum of square deviations: 2299168690.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,582 | INFO     | sum of deviations: -21578303174.999996
[2025-06-05 12:50:53] 2025-06-05 10:30:38,582 | INFO     | mean x: 1749113376.0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,582 | INFO     | mean y: 2483270.3743589744
[2025-06-05 12:50:53] 2025-06-05 10:30:38,583 | INFO     | -- intersect: 16418372578.077034
[2025-06-05 12:50:53] 2025-06-05 10:30:38,583 | INFO     | intersect: 16418372578.077034
[2025-06-05 12:50:53] 2025-06-05 10:30:38,583 | INFO     | chi2: 0.9392629786066229
[2025-06-05 12:50:53] 2025-06-05 10:30:38,583 | INFO     | current chi2=0.9392629786066229 (change=2.1274602606332182 %)
[2025-06-05 12:50:53] 2025-06-05 10:30:38,583 | INFO     | left removable region: 30
[2025-06-05 12:50:53] 2025-06-05 10:30:38,584 | INFO     | sum of square deviations: 1633472487.5
[2025-06-05 12:50:53] 2025-06-05 10:30:38,585 | INFO     | sum of deviations: 4973683220.5
[2025-06-05 12:50:53] 2025-06-05 10:30:38,585 | INFO     | mean x: 1749113650.5
[2025-06-05 12:50:53] 2025-06-05 10:30:38,585 | INFO     | mean y: 2482466.5
[2025-06-05 12:50:53] 2025-06-05 10:30:38,585 | INFO     | -- intersect: -5323311068.935565
[2025-06-05 12:50:53] 2025-06-05 10:30:38,585 | INFO     | intersect: -5323311068.935565
[2025-06-05 12:50:53] 2025-06-05 10:30:38,585 | INFO     | chi2: 0.0006130493166279366
[2025-06-05 12:50:53] 2025-06-05 10:30:38,585 | INFO     | -- intersect: -5323311068.935565
[2025-06-05 12:50:53] 2025-06-05 10:30:38,586 | INFO     | current memory leak: 3.04 B/s (using 174 data points, chi2=0.00)
[2025-06-05 12:50:53] 2025-06-05 10:30:38,587 | INFO     | ..............................
[2025-06-05 12:50:53] 2025-06-05 10:30:38,587 | INFO     | . Timing measurements:
[2025-06-05 12:50:53] 2025-06-05 10:30:38,587 | INFO     | . get job = 0 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,588 | INFO     | . initial setup = 3 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,588 | INFO     | . payload setup = 177 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,588 | INFO     | . stage-in = 0 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,588 | INFO     | . payload execution = 12941 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,588 | INFO     | . stage-out = 2 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,588 | INFO     | . log creation = 0 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,588 | INFO     | ..............................
[2025-06-05 12:50:53] 2025-06-05 10:30:38,713 | INFO     | 
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | job summary report
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | --------------------------------------------------
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | PanDA job id: 6677579446
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | task id: 45006595
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | errors: (none)
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | pilot state: finished 
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | transexitcode: 0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,714 | INFO     | exeerrorcode: 0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | exeerrordiag: 
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | exitcode: 0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | exitmsg: OK
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | cpuconsumptiontime: 48457 s
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | nevents: 400
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | neventsw: 0
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | pid: 6876
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | pgrp: 6876
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | corecount: 8
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | event service: False
[2025-06-05 12:50:53] 2025-06-05 10:30:38,715 | INFO     | sizes: {0: 2397171, 1: 2397370, 12: 2397370, 23: 2397398, 34: 2397426, 44: 2397454, 55: 2397610, 66: 2397638, 77: 2397666, 87: 2397722, 89: 2397956, 98: 2398292, 1
[2025-06-05 12:50:53] 2025-06-05 10:30:38,716 | INFO     | --------------------------------------------------
[2025-06-05 12:50:53] 2025-06-05 10:30:38,716 | INFO     | 
[2025-06-05 12:50:53] 2025-06-05 10:30:38,716 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 12:50:53] 2025-06-05 10:30:39,146 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,147 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,147 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,147 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,147 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,147 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,147 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,147 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,148 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:50:53] 2025-06-05 10:30:39,149 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,149 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:50:53] 2025-06-05 10:30:39,149 | INFO     | job 6677579446 has completed (purged errors)
[2025-06-05 12:50:53] 2025-06-05 10:30:39,149 | INFO     | overall cleanup function is called
[2025-06-05 12:50:53] 2025-06-05 10:30:40,158 | INFO     | --- collectZombieJob: --- 10, [6876]
[2025-06-05 12:50:53] 2025-06-05 10:30:40,158 | INFO     | zombie collector waiting for pid 6876
[2025-06-05 12:50:53] 2025-06-05 10:30:40,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:50:53] 2025-06-05 10:30:40,158 | INFO     | collected zombie processes
[2025-06-05 12:50:53] 2025-06-05 10:30:40,159 | INFO     | will attempt to kill all subprocesses of pid=6876
[2025-06-05 12:50:53] 2025-06-05 10:30:40,267 | INFO     | process IDs to be killed: [6876] (in reverse order)
[2025-06-05 12:50:53] 2025-06-05 10:30:40,838 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:50:53] 2025-06-05 10:30:40,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:50:53] 2025-06-05 10:30:40,842 | INFO     | did not find any defunct processes belonging to 6876
[2025-06-05 12:50:53] 2025-06-05 10:30:40,846 | INFO     | did not find any defunct processes belonging to 6876
[2025-06-05 12:50:53] 2025-06-05 10:30:40,846 | INFO     | ready for new job
[2025-06-05 12:50:53] 2025-06-05 10:30:40,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:50:53] 2025-06-05 10:30:40,849 | INFO     | **************************************
[2025-06-05 12:50:53] 2025-06-05 10:30:40,849 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:50:53] 2025-06-05 10:30:40,849 | INFO     | **************************************
[2025-06-05 12:50:53] 2025-06-05 10:30:40,849 | INFO     | 
[2025-06-05 12:50:53] 2025-06-05 10:30:40,850 | INFO     | pilot is running in a VM
[2025-06-05 12:50:53] 2025-06-05 10:30:40,850 | INFO     | architecture information:
[2025-06-05 12:50:53] 2025-06-05 10:30:40,865 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:50:53] 2025-06-05 10:30:41,179 | INFO     | cat /etc/os-release:
[2025-06-05 12:50:53] NAME="CentOS Linux"
[2025-06-05 12:50:53] VERSION="7 (Core)"
[2025-06-05 12:50:53] ID="centos"
[2025-06-05 12:50:53] ID_LIKE="rhel fedora"
[2025-06-05 12:50:53] VERSION_ID="7"
[2025-06-05 12:50:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:50:53] ANSI_COLOR="0;31"
[2025-06-05 12:50:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:50:53] HOME_URL="https://www.centos.org/"
[2025-06-05 12:50:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:50:53] 
[2025-06-05 12:50:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:50:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:50:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:50:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:50:53] 
[2025-06-05 12:50:53] 2025-06-05 10:30:41,180 | INFO     | **************************************
[2025-06-05 12:50:53] 2025-06-05 10:30:41,683 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 12:50:53] 2025-06-05 10:30:41,933 | INFO     | sufficient remaining disk space (496902340608 B)
[2025-06-05 12:50:53] 2025-06-05 10:30:41,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:50:53] 2025-06-05 10:30:41,933 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:50:53] 2025-06-05 10:30:41,933 | INFO     | update_server=False
[2025-06-05 12:50:53] 2025-06-05 10:30:41,933 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:50:53] 2025-06-05 10:30:41,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:50:53] 2025-06-05 10:30:41,934 | INFO     | aborting loop
[2025-06-05 12:50:53] 2025-06-05 10:30:41,942 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 12:50:53] 2025-06-05 10:30:41,942 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:50:53] 2025-06-05 10:30:41,943 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:50:53] 2025-06-05 10:30:41,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:50:53] 2025-06-05 10:30:42,046 | INFO     | all data control threads have been joined
[2025-06-05 12:50:53] 2025-06-05 10:30:42,066 | INFO     | all job control threads have been joined
[2025-06-05 12:50:53] 2025-06-05 10:30:42,940 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:42,944 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:43,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:50:53] 2025-06-05 10:30:43,052 | INFO     | [data] control thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:43,072 | INFO     | [job] control thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:43,330 | INFO     | all payload control threads have been joined
[2025-06-05 12:50:53] 2025-06-05 10:30:43,372 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:43,443 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:43,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:50:53] 2025-06-05 10:30:43,800 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:44,057 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:44,079 | INFO     | [job] validate thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:44,105 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:44,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:50:53] 2025-06-05 10:30:44,279 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:44,336 | INFO     | [payload] control thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:44,735 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:45,037 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:48,168 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:52,805 | INFO     | job.realtimelogging is not enabled
[2025-06-05 12:50:53] 2025-06-05 10:30:53,811 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:50:53] 2025-06-05 10:30:55,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494827374400)>', '<ExcThread(monitor, started 140494378084096)>']
[2025-06-05 12:50:53] 2025-06-05 10:30:56,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:50:53] 2025-06-05 10:30:56,029 | INFO     | [monitor] control thread has ended
[2025-06-05 12:50:53] 2025-06-05 10:31:00,345 | INFO     | all workflow threads have been joined
[2025-06-05 12:50:53] 2025-06-05 10:31:00,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:50:53] 2025-06-05 10:31:00,346 | INFO     | traces error code: 0
[2025-06-05 12:50:53] 2025-06-05 10:31:00,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:50:53] 2025-06-05 10:31:00,760 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:50:53] 2025-06-05 10:31:00,843 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:50:53] 2025-06-05 10:31:00,928 [wrapper] pilotpid: 30611
[2025-06-05 12:50:53] 2025-06-05 10:31:01,047 [wrapper] Pilot exit status: 0
[2025-06-05 12:50:53] 2025-06-05 10:31:01,502 [wrapper] pandaids: 6677579446
[2025-06-05 12:50:53] 2025-06-05 10:31:02,449 [wrapper] cleanup supervisor_pilot  5896 30612
[2025-06-05 12:50:53] 2025-06-05 10:31:02,560 [wrapper] Test setup, not cleaning
[2025-06-05 12:50:53] 2025-06-05 10:31:02,664 [wrapper] apfmon messages muted
[2025-06-05 12:50:53] 2025-06-05 10:31:02,705 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:50:53] 2025-06-05 10:31:02,803 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:50:53]  *** Error codes and diagnostics ***
[2025-06-05 12:50:53]     "exeErrorCode": 0,
[2025-06-05 12:50:53]     "exeErrorDiag": "",
[2025-06-05 12:50:53]     "pilotErrorCode": 0,
[2025-06-05 12:50:53]     "pilotErrorDiag": "",
[2025-06-05 12:50:53]  *** Listing of results directory ***
[2025-06-05 12:50:53] total 388804
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc      5111 Jun  3 13:06 queuedata.json
[2025-06-05 12:50:53] -rwx------. 1 boinc boinc     37140 Jun  3 13:06 runpilot2-wrapper.sh
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc       100 Jun  5 08:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:50:53] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 08:44 run_atlas
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc       105 Jun  5 08:44 job.xml
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc      6392 Jun  5 08:44 init_data.xml
[2025-06-05 12:50:53] -rw-r--r--. 2 boinc boinc 213957514 Jun  5 08:44 EVNT.45006593._001192.pool.root.1
[2025-06-05 12:50:53] -rw-r--r--. 2 boinc boinc     15093 Jun  5 08:44 start_atlas.sh
[2025-06-05 12:50:53] drwxrwx--x. 2 boinc boinc        68 Jun  5 08:44 shared
[2025-06-05 12:50:53] -rw-r--r--. 2 boinc boinc    508880 Jun  5 08:44 input.tar.gz
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc         0 Jun  5 08:44 boinc_lockfile
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc      2525 Jun  5 08:44 pandaJob.out
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc    986926 Jun  5 08:47 agis_schedconf.cvmfs.json
[2025-06-05 12:50:53] drwx------. 4 boinc boinc      4096 Jun  5 08:47 pilot3
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc 177345737 Jun  5 12:27 HITS.45006595._029779.pool.root.1
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc       531 Jun  5 12:28 boinc_task_state.xml
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc      1016 Jun  5 12:29 memory_monitor_summary.json
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc   1598969 Jun  5 12:29 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc    367313 Jun  5 12:29 log.45006595._029779.job.log.tgz.1
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc        95 Jun  5 12:29 pilot_heartbeat.json
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc      7685 Jun  5 12:30 heartbeat.json
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc      4611 Jun  5 12:31 pilotlog.txt
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc   1139765 Jun  5 12:31 log.45006595._029779.job.log.1
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc       357 Jun  5 12:31 output.list
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc       620 Jun  5 12:31 runtime_log
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc   1525760 Jun  5 12:31 result.tar.gz
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc      8659 Jun  5 12:31 runtime_log.err
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc       657 Jun  5 12:31 mYtNDm7deg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjcjKDmkcxVym.diag
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc      8192 Jun  5 12:50 boinc_mmap_file
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc        28 Jun  5 12:50 wrapper_checkpoint.txt
[2025-06-05 12:50:53] -rw-r--r--. 1 boinc boinc     20486 Jun  5 12:50 stderr.txt
[2025-06-05 12:50:53] HITS file was successfully produced:
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc 177345737 Jun  5 12:27 shared/HITS.pool.root.1
[2025-06-05 12:50:53]  *** Contents of shared directory: ***
[2025-06-05 12:50:53] total 384144
[2025-06-05 12:50:53] -rw-r--r--. 2 boinc boinc 213957514 Jun  5 08:44 ATLAS.root_0
[2025-06-05 12:50:53] -rw-r--r--. 2 boinc boinc     15093 Jun  5 08:44 start_atlas.sh
[2025-06-05 12:50:53] -rw-r--r--. 2 boinc boinc    508880 Jun  5 08:44 input.tar.gz
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc 177345737 Jun  5 12:27 HITS.pool.root.1
[2025-06-05 12:50:53] -rw-------. 1 boinc boinc   1525760 Jun  5 12:31 result.tar.gz
12:50:55 (25755): run_atlas exited; CPU time 48632.160863
12:50:55 (25755): called boinc_finish(0)

</stderr_txt>
]]>

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