Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:21:22 (204012): wrapper (7.7.26015): starting
17:21:22 (204012): wrapper: running run_atlas (--nthreads 9)
[2025-06-04 17:21:22] Arguments: --nthreads 9
[2025-06-04 17:21:22] Threads: 9
[2025-06-04 17:21:22] Checking for CVMFS
[2025-06-04 17:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:21:23] 2.11.2.0 6636 29316 251344 146795 0 292 15370264 18432001 8225 130560 0 70617496 99.498 72147766 30688 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 17:21:23] CVMFS is ok
[2025-06-04 17:21:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 17:21:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 17:21:23] Further information can be found at the LHC@home message board.
[2025-06-04 17:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:21:23] Checking for apptainer binary...
[2025-06-04 17:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:21:23] Running /usr/bin/apptainer --version
[2025-06-04 17:21:23] apptainer version 1.3.2-1.el7
[2025-06-04 17:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:21:24] c-210-37-3.aglt2.org
[2025-06-04 17:21:24] apptainer works
[2025-06-04 17:21:24] Set ATHENA_PROC_NUMBER=9
[2025-06-04 17:21:24] Set ATHENA_CORE_NUMBER=9
[2025-06-04 17:21:24] Starting ATLAS job with PandaID=6678364440
[2025-06-04 17:21:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:24:40]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:24:40] 2025-06-05 01:24:23,184 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:24:40] 2025-06-05 01:24:23,184 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:24:40] 2025-06-05 01:24:23,185 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:24:40] 2025-06-05 01:24:23,185 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:24:40] 2025-06-05 01:24:23,208 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:24:40] 2025-06-05 01:24:23,245 | INFO     | sum of square deviations: 4180494779.932766
[2025-06-04 21:24:40] 2025-06-05 01:24:23,246 | INFO     | sum of deviations: -76014769356.09244
[2025-06-04 21:24:40] 2025-06-05 01:24:23,246 | INFO     | mean x: 1749079351.9831932
[2025-06-04 21:24:40] 2025-06-05 01:24:23,246 | INFO     | mean y: 2529513.2268907563
[2025-06-04 21:24:40] 2025-06-05 01:24:23,246 | INFO     | -- intersect: 31806387794.481422
[2025-06-04 21:24:40] 2025-06-05 01:24:23,246 | INFO     | intersect: 31806387794.481422
[2025-06-04 21:24:40] 2025-06-05 01:24:23,247 | INFO     | chi2: 4.073503592900318
[2025-06-04 21:24:40] 2025-06-05 01:24:23,247 | INFO     | sum of square deviations: 3922562226.2403517
[2025-06-04 21:24:40] 2025-06-05 01:24:23,282 | INFO     | sum of deviations: -26192590157.96138
[2025-06-04 21:24:40] 2025-06-05 01:24:23,282 | INFO     | mean x: 1749079199.4935622
[2025-06-04 21:24:40] 2025-06-05 01:24:23,282 | INFO     | mean y: 2558729.025751073
[2025-06-04 21:24:40] 2025-06-05 01:24:23,282 | INFO     | -- intersect: 11681892792.786478
[2025-06-04 21:24:40] 2025-06-05 01:24:23,282 | INFO     | intersect: 11681892792.786478
[2025-06-04 21:24:40] 2025-06-05 01:24:23,282 | INFO     | chi2: 1.6220612845601279
[2025-06-04 21:24:40] 2025-06-05 01:24:23,283 | INFO     | current chi2=1.6220612845601279 (change=60.18019261386666 %)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,283 | INFO     | sum of square deviations: 3675453116.0
[2025-06-04 21:24:40] 2025-06-05 01:24:23,284 | INFO     | sum of deviations: -25374744253.999985
[2025-06-04 21:24:40] 2025-06-05 01:24:23,284 | INFO     | mean x: 1749079047.0
[2025-06-04 21:24:40] 2025-06-05 01:24:23,284 | INFO     | mean y: 2559233.6578947366
[2025-06-04 21:24:40] 2025-06-05 01:24:23,284 | INFO     | -- intersect: 12077923031.511606
[2025-06-04 21:24:40] 2025-06-05 01:24:23,284 | INFO     | intersect: 12077923031.511606
[2025-06-04 21:24:40] 2025-06-05 01:24:23,285 | INFO     | chi2: 1.6203803859123225
[2025-06-04 21:24:40] 2025-06-05 01:24:23,297 | INFO     | current chi2=1.6203803859123225 (change=0.10362732060775585 %)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,297 | INFO     | right removable region: 227
[2025-06-04 21:24:40] 2025-06-05 01:24:23,297 | INFO     | sum of square deviations: 3922492076.2403517
[2025-06-04 21:24:40] 2025-06-05 01:24:23,299 | INFO     | sum of deviations: -110179724082.9828
[2025-06-04 21:24:40] 2025-06-05 01:24:23,299 | INFO     | mean x: 1749079504.4935622
[2025-06-04 21:24:40] 2025-06-05 01:24:23,299 | INFO     | mean y: 2549502.678111588
[2025-06-04 21:24:40] 2025-06-05 01:24:23,299 | INFO     | -- intersect: 49132820121.09922
[2025-06-04 21:24:40] 2025-06-05 01:24:23,299 | INFO     | intersect: 49132820121.09922
[2025-06-04 21:24:40] 2025-06-05 01:24:23,299 | INFO     | chi2: 2.7368442525781798
[2025-06-04 21:24:40] 2025-06-05 01:24:23,300 | INFO     | current chi2=2.7368442525781798 (change=32.813505863890555 %)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,300 | INFO     | sum of square deviations: 3675326784.9956164
[2025-06-04 21:24:40] 2025-06-05 01:24:23,317 | INFO     | sum of deviations: -102168766753.27626
[2025-06-04 21:24:40] 2025-06-05 01:24:23,317 | INFO     | mean x: 1749079657.004386
[2025-06-04 21:24:40] 2025-06-05 01:24:23,318 | INFO     | mean y: 2544553.2763157897
[2025-06-04 21:24:40] 2025-06-05 01:24:23,318 | INFO     | -- intersect: 48624428255.95085
[2025-06-04 21:24:40] 2025-06-05 01:24:23,318 | INFO     | intersect: 48624428255.95085
[2025-06-04 21:24:40] 2025-06-05 01:24:23,318 | INFO     | chi2: 2.733262550872652
[2025-06-04 21:24:40] 2025-06-05 01:24:23,318 | INFO     | current chi2=2.733262550872652 (change=0.13086976732979613 %)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,318 | INFO     | left removable region: 20
[2025-06-04 21:24:40] 2025-06-05 01:24:23,318 | INFO     | sum of square deviations: 2750470155.2173896
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | sum of deviations: -36378306420.42026
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | mean x: 1749079626.5507247
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | mean y: 2564906.1352657005
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | -- intersect: 23136266061.80095
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | intersect: 23136266061.80095
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | chi2: 0.18249670034463727
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | -- intersect: 23136266061.80095
[2025-06-04 21:24:40] 2025-06-05 01:24:23,320 | INFO     | current memory leak: -13.23 B/s (using 207 data points, chi2=0.18)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,341 | INFO     | ..............................
[2025-06-04 21:24:40] 2025-06-05 01:24:23,341 | INFO     | . Timing measurements:
[2025-06-04 21:24:40] 2025-06-05 01:24:23,341 | INFO     | . get job = 0 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,341 | INFO     | . initial setup = 2 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,341 | INFO     | . payload setup = 7 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,342 | INFO     | . stage-in = 0 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,342 | INFO     | . payload execution = 14478 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,342 | INFO     | . stage-out = 5 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,342 | INFO     | . log creation = 1 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,342 | INFO     | ..............................
[2025-06-04 21:24:40] 2025-06-05 01:24:23,786 | INFO     | 
[2025-06-04 21:24:40] 2025-06-05 01:24:23,786 | INFO     | job summary report
[2025-06-04 21:24:40] 2025-06-05 01:24:23,786 | INFO     | --------------------------------------------------
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | PanDA job id: 6678364440
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | task id: 45006595
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | errors: (none)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | pilot state: finished 
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | transexitcode: 0
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | exeerrorcode: 0
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | exeerrordiag: 
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | exitcode: 0
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | exitmsg: OK
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | cpuconsumptiontime: 37912 s
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | nevents: 400
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | neventsw: 0
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | pid: 214122
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | pgrp: 214122
[2025-06-04 21:24:40] 2025-06-05 01:24:23,787 | INFO     | corecount: 9
[2025-06-04 21:24:40] 2025-06-05 01:24:23,788 | INFO     | event service: False
[2025-06-04 21:24:40] 2025-06-05 01:24:23,788 | INFO     | sizes: {0: 2397171, 1: 2397370, 5: 2397576, 11: 2397632, 14490: 2428051, 14491: 2428050, 14497: 2437175, 14500: 2437231, 14553: 2437401}
[2025-06-04 21:24:40] 2025-06-05 01:24:23,788 | INFO     | --------------------------------------------------
[2025-06-04 21:24:40] 2025-06-05 01:24:23,788 | INFO     | 
[2025-06-04 21:24:40] 2025-06-05 01:24:23,788 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 21:24:40] 2025-06-05 01:24:23,833 | INFO     | PID=207665 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 21:24:40] 2025-06-05 01:24:23,834 | INFO     | .. there are 10 such processes running
[2025-06-04 21:24:40] 2025-06-05 01:24:23,844 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,844 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,844 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,846 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,846 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,846 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,846 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:24:40] 2025-06-05 01:24:23,846 | INFO     | job 6678364440 has completed (purged errors)
[2025-06-04 21:24:40] 2025-06-05 01:24:23,846 | INFO     | overall cleanup function is called
[2025-06-04 21:24:40] 2025-06-05 01:24:24,853 | INFO     | --- collectZombieJob: --- 10, [214122]
[2025-06-04 21:24:40] 2025-06-05 01:24:24,854 | INFO     | zombie collector waiting for pid 214122
[2025-06-04 21:24:40] 2025-06-05 01:24:24,854 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:24:40] 2025-06-05 01:24:24,854 | INFO     | collected zombie processes
[2025-06-04 21:24:40] 2025-06-05 01:24:24,854 | INFO     | will attempt to kill all subprocesses of pid=214122
[2025-06-04 21:24:40] 2025-06-05 01:24:25,287 | INFO     | process IDs to be killed: [214122] (in reverse order)
[2025-06-04 21:24:40] 2025-06-05 01:24:25,386 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:24:40] 2025-06-05 01:24:25,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:24:40] 2025-06-05 01:24:25,394 | INFO     | did not find any defunct processes belonging to 214122
[2025-06-04 21:24:40] 2025-06-05 01:24:25,400 | INFO     | did not find any defunct processes belonging to 214122
[2025-06-04 21:24:40] 2025-06-05 01:24:25,401 | INFO     | ready for new job
[2025-06-04 21:24:40] 2025-06-05 01:24:25,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:24:40] 2025-06-05 01:24:25,403 | INFO     | **************************************
[2025-06-04 21:24:40] 2025-06-05 01:24:25,403 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:24:40] 2025-06-05 01:24:25,403 | INFO     | **************************************
[2025-06-04 21:24:40] 2025-06-05 01:24:25,403 | INFO     | 
[2025-06-04 21:24:40] 2025-06-05 01:24:25,407 | INFO     | architecture information:
[2025-06-04 21:24:40] 2025-06-05 01:24:25,407 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:24:40] 2025-06-05 01:24:25,501 | INFO     | cat /etc/os-release:
[2025-06-04 21:24:40] NAME="CentOS Linux"
[2025-06-04 21:24:40] VERSION="7 (Core)"
[2025-06-04 21:24:40] ID="centos"
[2025-06-04 21:24:40] ID_LIKE="rhel fedora"
[2025-06-04 21:24:40] VERSION_ID="7"
[2025-06-04 21:24:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:24:40] ANSI_COLOR="0;31"
[2025-06-04 21:24:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:24:40] HOME_URL="https://www.centos.org/"
[2025-06-04 21:24:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:24:40] 
[2025-06-04 21:24:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:24:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:24:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:24:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:24:40] 
[2025-06-04 21:24:40] 2025-06-05 01:24:25,501 | INFO     | **************************************
[2025-06-04 21:24:40] 2025-06-05 01:24:26,005 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 21:24:40] 2025-06-05 01:24:26,150 | INFO     | sufficient remaining disk space (56321114112 B)
[2025-06-04 21:24:40] 2025-06-05 01:24:26,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:24:40] 2025-06-05 01:24:26,151 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:24:40] 2025-06-05 01:24:26,151 | INFO     | update_server=False
[2025-06-04 21:24:40] 2025-06-05 01:24:26,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:24:40] 2025-06-05 01:24:26,151 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 21:24:40] 2025-06-05 01:24:26,151 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:24:40] 2025-06-05 01:24:26,151 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:24:40] 2025-06-05 01:24:26,151 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:24:40] 2025-06-05 01:24:26,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:24:40] 2025-06-05 01:24:26,394 | INFO     | all job control threads have been joined
[2025-06-04 21:24:40] 2025-06-05 01:24:26,552 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:24:40] 2025-06-05 01:24:26,552 | INFO     | aborting loop
[2025-06-04 21:24:40] 2025-06-05 01:24:26,673 | INFO     | all payload control threads have been joined
[2025-06-04 21:24:40] 2025-06-05 01:24:26,766 | INFO     | all data control threads have been joined
[2025-06-04 21:24:40] 2025-06-05 01:24:26,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:24:40] 2025-06-05 01:24:27,157 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,247 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,253 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,344 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,404 | INFO     | [job] control thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,429 | INFO     | [job] validate thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,435 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,576 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,679 | INFO     | [payload] control thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:27,772 | INFO     | [data] control thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:28,033 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:28,079 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:28,287 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:28,354 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:28,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:24:40] 2025-06-05 01:24:29,847 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:30,788 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:24:40] 2025-06-05 01:24:32,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231811602240)>', '<ExcThread(monitor, started 140231084865280)>']
[2025-06-04 21:24:40] 2025-06-05 01:24:32,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:24:40] 2025-06-05 01:24:32,233 | INFO     | [monitor] control thread has ended
[2025-06-04 21:24:40] 2025-06-05 01:24:37,244 | INFO     | all workflow threads have been joined
[2025-06-04 21:24:40] 2025-06-05 01:24:37,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:24:40] 2025-06-05 01:24:37,245 | INFO     | traces error code: 0
[2025-06-04 21:24:40] 2025-06-05 01:24:37,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:24:40] 2025-06-05 01:24:37,832 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:24:40] 2025-06-05 01:24:37,868 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:24:40] 2025-06-05 01:24:37,906 [wrapper] pilotpid: 207665
[2025-06-04 21:24:40] 2025-06-05 01:24:37,931 [wrapper] Pilot exit status: 0
[2025-06-04 21:24:40] 2025-06-05 01:24:38,108 [wrapper] pandaids: 6678364440
[2025-06-04 21:24:40] 2025-06-05 01:24:39,254 [wrapper] cleanup supervisor_pilot  61816 207666
[2025-06-04 21:24:40] 2025-06-05 01:24:39,307 [wrapper] Test setup, not cleaning
[2025-06-04 21:24:40] 2025-06-05 01:24:39,364 [wrapper] apfmon messages muted
[2025-06-04 21:24:40] 2025-06-05 01:24:39,399 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:24:40] 2025-06-05 01:24:39,435 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:24:40]  *** Error codes and diagnostics ***
[2025-06-04 21:24:40]     "exeErrorCode": 0,
[2025-06-04 21:24:40]     "exeErrorDiag": "",
[2025-06-04 21:24:40]     "pilotErrorCode": 0,
[2025-06-04 21:24:40]     "pilotErrorDiag": "",
[2025-06-04 21:24:40]  *** Listing of results directory ***
[2025-06-04 21:24:40] total 395928
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 02:24 queuedata.json
[2025-06-04 21:24:40] -rwx------ 1 boincer umatlas     37140 Jun  4 02:25 runpilot2-wrapper.sh
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas       100 Jun  4 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:24:40] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 17:21 run_atlas
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas       105 Jun  4 17:21 job.xml
[2025-06-04 21:24:40] -rw-r--r-- 2 boincer umatlas 215147913 Jun  4 17:21 EVNT.45006593._002159.pool.root.1
[2025-06-04 21:24:40] drwxrwx--x 2 boincer umatlas      4096 Jun  4 17:21 shared
[2025-06-04 21:24:40] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 17:21 input.tar.gz
[2025-06-04 21:24:40] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 17:21 start_atlas.sh
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas         0 Jun  4 17:21 boinc_lockfile
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 17:21 pandaJob.out
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas    987032 Jun  4 17:21 agis_schedconf.cvmfs.json
[2025-06-04 21:24:40] drwx------ 4 boincer umatlas      4096 Jun  4 17:21 pilot3
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas 183257166 Jun  4 21:20 HITS.45006595._053940.pool.root.1
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas       531 Jun  4 21:20 boinc_task_state.xml
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas      6355 Jun  4 21:22 init_data.xml
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas      1067 Jun  4 21:23 memory_monitor_summary.json
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas   1598969 Jun  4 21:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas    396627 Jun  4 21:23 log.45006595._053940.job.log.tgz.1
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas        95 Jun  4 21:24 pilot_heartbeat.json
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas      7767 Jun  4 21:24 heartbeat.json
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 21:24 boinc_mmap_file
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas        28 Jun  4 21:24 wrapper_checkpoint.txt
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas      4476 Jun  4 21:24 pilotlog.txt
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas   1200557 Jun  4 21:24 log.45006595._053940.job.log.1
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas       357 Jun  4 21:24 output.list
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas       620 Jun  4 21:24 runtime_log
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas   1617920 Jun  4 21:24 result.tar.gz
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas      8670 Jun  4 21:24 runtime_log.err
[2025-06-04 21:24:40] -rw------- 1 boincer umatlas       663 Jun  4 21:24 df9NDmtjwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5SnKDmKnscAo.diag
[2025-06-04 21:24:40] -rw-r--r-- 1 boincer umatlas     21003 Jun  4 21:24 stderr.txt
[2025-06-04 21:24:41] HITS file was successfully produced:
[2025-06-04 21:24:41] -rw------- 1 boincer umatlas 183257166 Jun  4 21:20 shared/HITS.pool.root.1
[2025-06-04 21:24:41]  *** Contents of shared directory: ***
[2025-06-04 21:24:41] total 391172
[2025-06-04 21:24:41] -rw-r--r-- 2 boincer umatlas 215147913 Jun  4 17:21 ATLAS.root_0
[2025-06-04 21:24:41] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 17:21 input.tar.gz
[2025-06-04 21:24:41] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 17:21 start_atlas.sh
[2025-06-04 21:24:41] -rw------- 1 boincer umatlas 183257166 Jun  4 21:20 HITS.pool.root.1
[2025-06-04 21:24:41] -rw------- 1 boincer umatlas   1617920 Jun  4 21:24 result.tar.gz
21:24:42 (204012): run_atlas exited; CPU time 38157.156179
21:24:42 (204012): called boinc_finish(0)

</stderr_txt>
]]>

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