Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:20:21 (1019617): wrapper (7.7.26015): starting
17:20:21 (1019617): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 17:20:21] Arguments: --nthreads 12
[2025-06-04 17:20:21] Threads: 12
[2025-06-04 17:20:21] Checking for CVMFS
[2025-06-04 17:20:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:20:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:20:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:20:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:20:22] 2.12.6.0 5047 31983 427712 146795 0 20 25035150 32935936 13101 16776704 1 104232891 99.633 103574153 26804 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 17:20:22] CVMFS is ok
[2025-06-04 17:20:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 17:20:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 17:20:22] Further information can be found at the LHC@home message board.
[2025-06-04 17:20:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:20:22] Checking for apptainer binary...
[2025-06-04 17:20:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:20:22] Running /usr/bin/apptainer --version
[2025-06-04 17:20:22] apptainer version 1.4.1-1.el9
[2025-06-04 17:20:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:20:22] c6-6-39-2.aglt2.org
[2025-06-04 17:20:22] apptainer works
[2025-06-04 17:20:22] Set ATHENA_PROC_NUMBER=12
[2025-06-04 17:20:22] Set ATHENA_CORE_NUMBER=12
[2025-06-04 17:20:22] Starting ATLAS job with PandaID=6680059326
[2025-06-04 17:20:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:29:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:29:38] 2025-06-04 21:29:24,280 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 17:29:38] 2025-06-04 21:29:24,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680059326/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 17:29:38] 2025-06-04 21:29:24,281 | INFO     | extracted standard info from prmon json
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:29:38] 2025-06-04 21:29:24,283 | WARNING  | wrong length of table data, x=[1749072060.0, 1749072121.0, 1749072182.0, 1749072243.0, 1749072304.0, 1749072365.0, 1749072426.0], y=[2150.0, 1269608.0, 1783252.0, 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | ..............................
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . Timing measurements:
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . get job = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . initial setup = 2 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . payload setup = 7 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . stage-in = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . payload execution = 385 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . stage-out = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . log creation = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | ..............................
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 17:29:38] 2025-06-04 21:29:24,286 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6680059326/pilotlog.txt
[2025-06-04 17:29:38] 2025-06-04 21:29:24,302 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-04 17:29:38] - Log from pilotlog.txt -
[2025-06-04 17:29:38] 2025-06-04 21:29:24,280 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 17:29:38] 2025-06-04 21:29:24,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680059326/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 17:29:38] 2025-06-04 21:29:24,281 | INFO     | extracted standard info from prmon json
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:29:38] 2025-06-04 21:29:24,283 | WARNING  | wrong length of table data, x=[1749072060.0, 1749072121.0, 1749072182.0, 1749072243.0, 1749072304.0, 1749072365.0, 1749072426.0], y=[2150.0, 1269608.0, 1783252.0, 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | ..............................
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . Timing measurements:
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . get job = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . initial setup = 2 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . payload setup = 7 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . stage-in = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . payload execution = 385 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . stage-out = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . log creation = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | ..............................
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 17:29:38] 2025-06-04 21:29:24,286 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6680059326/pilotlog.txt
[2025-06-04 17:29:38] 2025-06-04 21:29:24,303 | WARNING  | 
[2025-06-04 17:29:38] [begin log extracts]
[2025-06-04 17:29:38] - Log from pilotlog.txt -
[2025-06-04 17:29:38] 2025-06-04 21:29:24,280 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 17:29:38] 2025-06-04 21:29:24,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680059326/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 17:29:38] 2025-06-04 21:29:24,281 | INFO     | extracted standard info from prmon json
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:29:38] 2025-06-04 21:29:24,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:29:38] 2025-06-04 21:29:24,283 | WARNING  | wrong length of table data, x=[1749072060.0, 1749072121.0, 1749072182.0, 1749072243.0, 1749072304.0, 1749072365.0, 1749072426.0], y=[2150.0, 1269608.0, 1783252.0, 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | ..............................
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . Timing measurements:
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . get job = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . initial setup = 2 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . payload setup = 7 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . stage-in = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . payload execution = 385 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . stage-out = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | . log creation = 0 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | ..............................
[2025-06-04 17:29:38] 2025-06-04 21:29:24,285 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 17:29:38] 2025-06-04 21:29:24,286 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6680059326/pilotlog.txt
[2025-06-04 17:29:38] [end log extracts]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,303 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-04 17:29:38] 2025-06-04 21:29:24,304 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,399 | INFO     | 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | job summary report
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | --------------------------------------------------
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | PanDA job id: 6680059326
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | task id: 45006595
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-04 21:27:17,120 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | pilot state: failed 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | transexitcode: 65
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | exeerrorcode: 65
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                                 4     3   FA
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | exitcode: 65
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "ISF_Kernel_FullG4MT_QS                                 4     3   FATAL  
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | cpuconsumptiontime: 701 s
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | nevents: 0
[2025-06-04 17:29:38] 2025-06-04 21:29:24,400 | INFO     | neventsw: 0
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | pid: 1029916
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | pgrp: 1029916
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | corecount: 12
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | event service: False
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | sizes: {0: 2397064, 1: 2397319, 5: 2397525, 12: 2397581, 396: 2427695, 397: 2432117, 515: 2432231}
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | --------------------------------------------------
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | 
[2025-06-04 17:29:38] 2025-06-04 21:29:24,401 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 17:29:38] 2025-06-04 21:29:24,422 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,422 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,422 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:29:38] 2025-06-04 21:29:24,424 | INFO     | job 6680059326 has completed (purged errors)
[2025-06-04 17:29:38] 2025-06-04 21:29:24,424 | INFO     | overall cleanup function is called
[2025-06-04 17:29:38] 2025-06-04 21:29:25,432 | INFO     | --- collectZombieJob: --- 10, [1029916]
[2025-06-04 17:29:38] 2025-06-04 21:29:25,432 | INFO     | zombie collector waiting for pid 1029916
[2025-06-04 17:29:38] 2025-06-04 21:29:25,432 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:29:38] 2025-06-04 21:29:25,432 | INFO     | collected zombie processes
[2025-06-04 17:29:38] 2025-06-04 21:29:25,432 | INFO     | will attempt to kill all subprocesses of pid=1029916
[2025-06-04 17:29:38] 2025-06-04 21:29:25,684 | INFO     | process IDs to be killed: [1029916] (in reverse order)
[2025-06-04 17:29:38] 2025-06-04 21:29:25,760 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:29:38] 2025-06-04 21:29:25,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:29:38] 2025-06-04 21:29:25,771 | INFO     | did not find any defunct processes belonging to 1029916
[2025-06-04 17:29:38] 2025-06-04 21:29:25,782 | INFO     | did not find any defunct processes belonging to 1029916
[2025-06-04 17:29:38] 2025-06-04 21:29:25,783 | INFO     | ready for new job
[2025-06-04 17:29:38] 2025-06-04 21:29:25,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:29:38] 2025-06-04 21:29:25,784 | INFO     | **************************************
[2025-06-04 17:29:38] 2025-06-04 21:29:25,785 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:29:38] 2025-06-04 21:29:25,785 | INFO     | **************************************
[2025-06-04 17:29:38] 2025-06-04 21:29:25,785 | INFO     | 
[2025-06-04 17:29:38] 2025-06-04 21:29:25,799 | INFO     | architecture information:
[2025-06-04 17:29:38] 2025-06-04 21:29:25,800 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:29:38] 2025-06-04 21:29:25,815 | INFO     | cat /etc/os-release:
[2025-06-04 17:29:38] NAME="CentOS Linux"
[2025-06-04 17:29:38] VERSION="7 (Core)"
[2025-06-04 17:29:38] ID="centos"
[2025-06-04 17:29:38] ID_LIKE="rhel fedora"
[2025-06-04 17:29:38] VERSION_ID="7"
[2025-06-04 17:29:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:29:38] ANSI_COLOR="0;31"
[2025-06-04 17:29:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:29:38] HOME_URL="https://www.centos.org/"
[2025-06-04 17:29:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:29:38] 
[2025-06-04 17:29:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:29:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:29:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:29:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:29:38] 
[2025-06-04 17:29:38] 2025-06-04 21:29:25,815 | INFO     | **************************************
[2025-06-04 17:29:38] 2025-06-04 21:29:26,318 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 17:29:38] 2025-06-04 21:29:26,331 | INFO     | sufficient remaining disk space (76549193728 B)
[2025-06-04 17:29:38] 2025-06-04 21:29:26,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:29:38] 2025-06-04 21:29:26,332 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:29:38] 2025-06-04 21:29:26,332 | INFO     | update_server=False
[2025-06-04 17:29:38] 2025-06-04 21:29:26,332 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:29:38] 2025-06-04 21:29:26,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:29:38] 2025-06-04 21:29:26,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:29:38] 2025-06-04 21:29:26,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:29:38] 2025-06-04 21:29:26,334 | INFO     | aborting loop
[2025-06-04 17:29:38] 2025-06-04 21:29:26,871 | INFO     | all job control threads have been joined
[2025-06-04 17:29:38] 2025-06-04 21:29:26,893 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:29:38] 2025-06-04 21:29:26,894 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:29:38] 2025-06-04 21:29:26,894 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:29:38] 2025-06-04 21:29:27,010 | INFO     | all data control threads have been joined
[2025-06-04 17:29:38] 2025-06-04 21:29:27,111 | INFO     | all payload control threads have been joined
[2025-06-04 17:29:38] 2025-06-04 21:29:27,334 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:27,336 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:27,339 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:27,716 | INFO     | [job] validate thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:27,876 | INFO     | [job] control thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:27,925 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,014 | INFO     | [data] control thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,045 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,059 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,116 | INFO     | [payload] control thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,163 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,339 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,675 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,704 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:29:38] 2025-06-04 21:29:28,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:28,934 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:32,710 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:29:38] 2025-06-04 21:29:33,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701905508160)>', '<ExcThread(monitor, started 140700947560192)>']
[2025-06-04 17:29:38] 2025-06-04 21:29:33,929 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:29:38] 2025-06-04 21:29:33,930 | INFO     | [monitor] control thread has ended
[2025-06-04 17:29:38] 2025-06-04 21:29:38,196 | INFO     | all workflow threads have been joined
[2025-06-04 17:29:38] 2025-06-04 21:29:38,197 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:29:38] 2025-06-04 21:29:38,197 | INFO     | traces error code: 0
[2025-06-04 17:29:38] 2025-06-04 21:29:38,197 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:29:38] 2025-06-04 21:29:38,359 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:29:38] 2025-06-04 21:29:38,362 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:29:38] 2025-06-04 21:29:38,365 [wrapper] pilotpid: 1023240
[2025-06-04 17:29:38] 2025-06-04 21:29:38,369 [wrapper] Pilot exit status: 0
[2025-06-04 17:29:38] 2025-06-04 21:29:38,381 [wrapper] pandaids: 6680059326
[2025-06-04 17:29:38] 2025-06-04 21:29:38,446 [wrapper] cleanup supervisor_pilot 1023246 1023241
[2025-06-04 17:29:38] 2025-06-04 21:29:38,449 [wrapper] Test setup, not cleaning
[2025-06-04 17:29:38] 2025-06-04 21:29:38,452 [wrapper] apfmon messages muted
[2025-06-04 17:29:38] 2025-06-04 21:29:38,455 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:29:38] 2025-06-04 21:29:38,458 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:29:38]  *** Error codes and diagnostics ***
[2025-06-04 17:29:38]     "exeErrorCode": 65,
[2025-06-04 17:29:38]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                                 4     3   FATAL  Standard std::exception is caught\"; Possible memory leak: 'pss' slope: 5885.44 KB/s",
[2025-06-04 17:29:38]     "pilotErrorCode": 1305,
[2025-06-04 17:29:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"ISF_Kernel_FullG4MT_QS                                 4     3   FATAL  Stand",
[2025-06-04 17:29:38]  *** Listing of results directory ***
[2025-06-04 17:29:38] total 214292
[2025-06-04 17:29:38] -rwx------. 1 boincer umatlas     37140 Jun  4 17:19 runpilot2-wrapper.sh
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 17:19 queuedata.json
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 17:19 pilot3.tar.gz
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas       100 Jun  4 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:29:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 17:20 run_atlas
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas       105 Jun  4 17:20 job.xml
[2025-06-04 17:29:38] -rw-r--r--. 2 boincer umatlas 214802496 Jun  4 17:20 EVNT.45006593._002130.pool.root.1
[2025-06-04 17:29:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 17:20 start_atlas.sh
[2025-06-04 17:29:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 17:20 shared
[2025-06-04 17:29:38] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 17:20 input.tar.gz
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas         0 Jun  4 17:20 boinc_lockfile
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 17:20 pandaJob.out
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas    987032 Jun  4 17:20 agis_schedconf.cvmfs.json
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas   1598969 Jun  4 17:20 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:29:38] drwx------. 4 boincer umatlas      4096 Jun  4 17:20 pilot3
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas       527 Jun  4 17:26 boinc_task_state.xml
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas      1022 Jun  4 17:27 memory_monitor_summary.json
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas    292586 Jun  4 17:27 log.45006595._056934.job.log.tgz.1
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas      6838 Jun  4 17:27 init_data.xml
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas        95 Jun  4 17:28 pilot_heartbeat.json
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas     11842 Jun  4 17:29 heartbeat.json
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas        24 Jun  4 17:29 wrapper_checkpoint.txt
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 17:29 boinc_mmap_file
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas      4353 Jun  4 17:29 pilotlog.txt
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas    104896 Jun  4 17:29 log.45006595._056934.job.log.1
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas       188 Jun  4 17:29 output.list
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas       620 Jun  4 17:29 runtime_log
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas    419840 Jun  4 17:29 result.tar.gz
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas      8513 Jun  4 17:29 runtime_log.err
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas       645 Jun  4 17:29 9vRMDmbhAh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm52nKDmSXp0tn.diag
[2025-06-04 17:29:38] -rw-r--r--. 1 boincer umatlas     22433 Jun  4 17:29 stderr.txt
[2025-06-04 17:29:38] No HITS result produced
[2025-06-04 17:29:38]  *** Contents of shared directory: ***
[2025-06-04 17:29:38] total 210704
[2025-06-04 17:29:38] -rw-r--r--. 2 boincer umatlas 214802496 Jun  4 17:20 ATLAS.root_0
[2025-06-04 17:29:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 17:20 start_atlas.sh
[2025-06-04 17:29:38] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 17:20 input.tar.gz
[2025-06-04 17:29:38] -rw-------. 1 boincer umatlas    419840 Jun  4 17:29 result.tar.gz
17:29:40 (1019617): run_atlas exited; CPU time 694.738179
17:29:40 (1019617): called boinc_finish(0)

</stderr_txt>
]]>

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