Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:28:19 (5523): wrapper (7.7.26015): starting
09:28:19 (5523): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 09:28:19] Arguments: --nthreads 8
[2025-06-05 09:28:19] Threads: 8
[2025-06-05 09:28:19] Checking for CVMFS
[2025-06-05 09:28:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 09:28:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 09:28:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 09:28:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 09:28:22] 2.11.2.0 4277 34336 96236 146810 0 16 19558405 25165824 3906 130560 0 17380002 99.782 18901257 2194 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 09:28:22] CVMFS is ok
[2025-06-05 09:28:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:28:22] Checking for apptainer binary...
[2025-06-05 09:28:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 09:28:22] Running /usr/bin/apptainer --version
[2025-06-05 09:28:22] apptainer version 1.3.2-1.el7
[2025-06-05 09:28:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 09:28:32] cg-vwn279.simple-grid.lan
[2025-06-05 09:28:32] apptainer works
[2025-06-05 09:28:32] Set ATHENA_PROC_NUMBER=8
[2025-06-05 09:28:32] Set ATHENA_CORE_NUMBER=8
[2025-06-05 09:28:32] Starting ATLAS job with PandaID=6680051327
[2025-06-05 09:28:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 13:49:29]  *** The last 200 lines of the pilot log: ***
[2025-06-05 13:49:29] 2025-06-05 11:21:10,700 | INFO     | extracted standard info from prmon json
[2025-06-05 13:49:29] 2025-06-05 11:21:10,700 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 13:49:29] 2025-06-05 11:21:10,701 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 13:49:29] 2025-06-05 11:21:10,701 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 13:49:29] 2025-06-05 11:21:10,701 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 13:49:29] 2025-06-05 11:21:10,705 | INFO     | fitting pss+swap vs Time
[2025-06-05 13:49:29] 2025-06-05 11:21:10,706 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,708 | INFO     | sum of deviations: 70282897345.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,708 | INFO     | mean x: 1749115786.5
[2025-06-05 13:49:29] 2025-06-05 11:21:10,708 | INFO     | mean y: 2427995.185185185
[2025-06-05 13:49:29] 2025-06-05 11:21:10,708 | INFO     | -- intersect: -39337888286.80645
[2025-06-05 13:49:29] 2025-06-05 11:21:10,708 | INFO     | intersect: -39337888286.80645
[2025-06-05 13:49:29] 2025-06-05 11:21:10,709 | INFO     | chi2: 7.314330269709137
[2025-06-05 13:49:29] 2025-06-05 11:21:10,709 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,716 | INFO     | sum of deviations: 82661723114.99998
[2025-06-05 13:49:29] 2025-06-05 11:21:10,716 | INFO     | mean x: 1749115634.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,716 | INFO     | mean y: 2436706.3791469196
[2025-06-05 13:49:29] 2025-06-05 11:21:10,717 | INFO     | -- intersect: -49634725062.2388
[2025-06-05 13:49:29] 2025-06-05 11:21:10,717 | INFO     | intersect: -49634725062.2388
[2025-06-05 13:49:29] 2025-06-05 11:21:10,717 | INFO     | chi2: 6.6203043294822
[2025-06-05 13:49:29] 2025-06-05 11:21:10,717 | INFO     | current chi2=6.6203043294822 (change=9.488578101280295 %)
[2025-06-05 13:49:29] 2025-06-05 11:21:10,717 | INFO     | right removable region: 210
[2025-06-05 13:49:29] 2025-06-05 11:21:10,718 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,719 | INFO     | sum of deviations: -4032808515.000002
[2025-06-05 13:49:29] 2025-06-05 11:21:10,719 | INFO     | mean x: 1749115939.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,719 | INFO     | mean y: 2481401.047393365
[2025-06-05 13:49:29] 2025-06-05 11:21:10,719 | INFO     | -- intersect: 2424124647.802443
[2025-06-05 13:49:29] 2025-06-05 11:21:10,720 | INFO     | intersect: 2424124647.802443
[2025-06-05 13:49:29] 2025-06-05 11:21:10,720 | INFO     | chi2: 2.4069336829260966
[2025-06-05 13:49:29] 2025-06-05 11:21:10,720 | INFO     | current chi2=2.4069336829260966 (change=67.09290400935353 %)
[2025-06-05 13:49:29] 2025-06-05 11:21:10,720 | INFO     | sum of square deviations: 2710627567.5
[2025-06-05 13:49:29] 2025-06-05 11:21:10,722 | INFO     | sum of deviations: -40805645945.50001
[2025-06-05 13:49:29] 2025-06-05 11:21:10,722 | INFO     | mean x: 1749116091.5
[2025-06-05 13:49:29] 2025-06-05 11:21:10,722 | INFO     | mean y: 2508947.645631068
[2025-06-05 13:49:29] 2025-06-05 11:21:10,722 | INFO     | -- intersect: 26333611310.46619
[2025-06-05 13:49:29] 2025-06-05 11:21:10,722 | INFO     | intersect: 26333611310.46619
[2025-06-05 13:49:29] 2025-06-05 11:21:10,723 | INFO     | chi2: 0.9743962786598905
[2025-06-05 13:49:29] 2025-06-05 11:21:10,723 | INFO     | current chi2=0.9743962786598905 (change=59.51711151944485 %)
[2025-06-05 13:49:29] 2025-06-05 11:21:10,723 | INFO     | sum of square deviations: 2518000700.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,725 | INFO     | sum of deviations: -39327109066.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,725 | INFO     | mean x: 1749116244.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,725 | INFO     | mean y: 2507721.4427860696
[2025-06-05 13:49:29] 2025-06-05 11:21:10,725 | INFO     | -- intersect: 27320881896.994156
[2025-06-05 13:49:29] 2025-06-05 11:21:10,725 | INFO     | intersect: 27320881896.994156
[2025-06-05 13:49:29] 2025-06-05 11:21:10,726 | INFO     | chi2: 0.9504708497509669
[2025-06-05 13:49:29] 2025-06-05 11:21:10,726 | INFO     | current chi2=0.9504708497509669 (change=2.455410538085067 %)
[2025-06-05 13:49:29] 2025-06-05 11:21:10,726 | INFO     | left removable region: 30
[2025-06-05 13:49:29] 2025-06-05 11:21:10,726 | INFO     | sum of square deviations: 1808350185.0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,727 | INFO     | sum of deviations: -4630953561.5
[2025-06-05 13:49:29] 2025-06-05 11:21:10,727 | INFO     | mean x: 1749116518.5
[2025-06-05 13:49:29] 2025-06-05 11:21:10,728 | INFO     | mean y: 2499927.3055555555
[2025-06-05 13:49:29] 2025-06-05 11:21:10,728 | INFO     | -- intersect: 4481763644.04306
[2025-06-05 13:49:29] 2025-06-05 11:21:10,728 | INFO     | intersect: 4481763644.04306
[2025-06-05 13:49:29] 2025-06-05 11:21:10,728 | INFO     | chi2: 0.07081080270472499
[2025-06-05 13:49:29] 2025-06-05 11:21:10,728 | INFO     | -- intersect: 4481763644.04306
[2025-06-05 13:49:29] 2025-06-05 11:21:10,728 | INFO     | current memory leak: -2.56 B/s (using 180 data points, chi2=0.07)
[2025-06-05 13:49:29] 2025-06-05 11:21:10,729 | INFO     | ..............................
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . Timing measurements:
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . get job = 0 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . initial setup = 8 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . payload setup = 197 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . stage-in = 0 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . payload execution = 13298 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . stage-out = 3 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | . log creation = 1 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,730 | INFO     | ..............................
[2025-06-05 13:49:29] 2025-06-05 11:21:10,880 | INFO     | 
[2025-06-05 13:49:29] 2025-06-05 11:21:10,880 | INFO     | job summary report
[2025-06-05 13:49:29] 2025-06-05 11:21:10,880 | INFO     | --------------------------------------------------
[2025-06-05 13:49:29] 2025-06-05 11:21:10,880 | INFO     | PanDA job id: 6680051327
[2025-06-05 13:49:29] 2025-06-05 11:21:10,880 | INFO     | task id: 45006595
[2025-06-05 13:49:29] 2025-06-05 11:21:10,880 | INFO     | errors: (none)
[2025-06-05 13:49:29] 2025-06-05 11:21:10,880 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | pilot state: finished 
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | transexitcode: 0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | exeerrorcode: 0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | exeerrordiag: 
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | exitcode: 0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | exitmsg: OK
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | cpuconsumptiontime: 49135 s
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | nevents: 400
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | neventsw: 0
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | pid: 22274
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | pgrp: 22274
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | corecount: 8
[2025-06-05 13:49:29] 2025-06-05 11:21:10,881 | INFO     | event service: False
[2025-06-05 13:49:29] 2025-06-05 11:21:10,882 | INFO     | sizes: {0: 2397015, 1: 2397270, 2: 2397270, 12: 2397298, 23: 2397326, 34: 2397354, 45: 2397510, 55: 2397538, 66: 2397566, 77: 2397594, 80: 2397856, 87: 2398164, 13
[2025-06-05 13:49:29] 2025-06-05 11:21:10,882 | INFO     | --------------------------------------------------
[2025-06-05 13:49:29] 2025-06-05 11:21:10,882 | INFO     | 
[2025-06-05 13:49:29] 2025-06-05 11:21:10,882 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-05 13:49:29] 2025-06-05 11:21:11,424 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,424 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,426 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 13:49:29] 2025-06-05 11:21:11,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,426 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 13:49:29] 2025-06-05 11:21:11,426 | INFO     | job 6680051327 has completed (purged errors)
[2025-06-05 13:49:29] 2025-06-05 11:21:11,426 | INFO     | overall cleanup function is called
[2025-06-05 13:49:29] 2025-06-05 11:21:12,440 | INFO     | --- collectZombieJob: --- 10, [22274]
[2025-06-05 13:49:29] 2025-06-05 11:21:12,440 | INFO     | zombie collector waiting for pid 22274
[2025-06-05 13:49:29] 2025-06-05 11:21:12,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 13:49:29] 2025-06-05 11:21:12,440 | INFO     | collected zombie processes
[2025-06-05 13:49:29] 2025-06-05 11:21:12,440 | INFO     | will attempt to kill all subprocesses of pid=22274
[2025-06-05 13:49:29] 2025-06-05 11:21:12,551 | INFO     | process IDs to be killed: [22274] (in reverse order)
[2025-06-05 13:49:29] 2025-06-05 11:21:13,472 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 13:49:29] 2025-06-05 11:21:13,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 13:49:29] 2025-06-05 11:21:13,477 | INFO     | did not find any defunct processes belonging to 22274
[2025-06-05 13:49:29] 2025-06-05 11:21:13,481 | INFO     | did not find any defunct processes belonging to 22274
[2025-06-05 13:49:29] 2025-06-05 11:21:13,481 | INFO     | ready for new job
[2025-06-05 13:49:29] 2025-06-05 11:21:13,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 13:49:29] 2025-06-05 11:21:13,484 | INFO     | **************************************
[2025-06-05 13:49:29] 2025-06-05 11:21:13,484 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 13:49:29] 2025-06-05 11:21:13,484 | INFO     | **************************************
[2025-06-05 13:49:29] 2025-06-05 11:21:13,485 | INFO     | 
[2025-06-05 13:49:29] 2025-06-05 11:21:13,485 | INFO     | pilot is running in a VM
[2025-06-05 13:49:29] 2025-06-05 11:21:13,485 | INFO     | architecture information:
[2025-06-05 13:49:29] 2025-06-05 11:21:13,500 | INFO     | executing command: cat /etc/os-release
[2025-06-05 13:49:29] 2025-06-05 11:21:13,741 | INFO     | cat /etc/os-release:
[2025-06-05 13:49:29] NAME="CentOS Linux"
[2025-06-05 13:49:29] VERSION="7 (Core)"
[2025-06-05 13:49:29] ID="centos"
[2025-06-05 13:49:29] ID_LIKE="rhel fedora"
[2025-06-05 13:49:29] VERSION_ID="7"
[2025-06-05 13:49:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 13:49:29] ANSI_COLOR="0;31"
[2025-06-05 13:49:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 13:49:29] HOME_URL="https://www.centos.org/"
[2025-06-05 13:49:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 13:49:29] 
[2025-06-05 13:49:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 13:49:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 13:49:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 13:49:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 13:49:29] 
[2025-06-05 13:49:29] 2025-06-05 11:21:13,742 | INFO     | **************************************
[2025-06-05 13:49:29] 2025-06-05 11:21:14,247 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-05 13:49:29] 2025-06-05 11:21:14,548 | INFO     | sufficient remaining disk space (496718839808 B)
[2025-06-05 13:49:29] 2025-06-05 11:21:14,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 13:49:29] 2025-06-05 11:21:14,549 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 13:49:29] 2025-06-05 11:21:14,549 | INFO     | update_server=False
[2025-06-05 13:49:29] 2025-06-05 11:21:14,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 13:49:29] 2025-06-05 11:21:14,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 13:49:29] 2025-06-05 11:21:14,550 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 13:49:29] 2025-06-05 11:21:14,550 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 13:49:29] 2025-06-05 11:21:14,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 13:49:29] 2025-06-05 11:21:14,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 13:49:29] 2025-06-05 11:21:14,731 | INFO     | all data control threads have been joined
[2025-06-05 13:49:29] 2025-06-05 11:21:15,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 13:49:29] 2025-06-05 11:21:15,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:49:29] 2025-06-05 11:21:15,163 | INFO     | aborting loop
[2025-06-05 13:49:29] 2025-06-05 11:21:15,543 | INFO     | all job control threads have been joined
[2025-06-05 13:49:29] 2025-06-05 11:21:15,555 | INFO     | [job] retrieve thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:15,620 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:15,657 | INFO     | [job] validate thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:15,737 | INFO     | [data] control thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:15,792 | INFO     | all payload control threads have been joined
[2025-06-05 13:49:29] 2025-06-05 11:21:15,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:49:29] 2025-06-05 11:21:15,894 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,130 | INFO     | [data] copytool_in thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,169 | INFO     | [job] job monitor thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,377 | INFO     | [payload] validate_post thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,470 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,549 | INFO     | [job] control thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,798 | INFO     | [payload] control thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,855 | INFO     | [payload] failed_post thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:16,900 | INFO     | [job] queue monitor thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:17,100 | INFO     | [data] copytool_out thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:18,559 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 13:49:29] 2025-06-05 11:21:20,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794415556416)>', '<ExcThread(monitor, started 139793518286592)>']
[2025-06-05 13:49:29] 2025-06-05 11:21:20,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 13:49:29] 2025-06-05 11:21:20,586 | INFO     | [monitor] control thread has ended
[2025-06-05 13:49:29] 2025-06-05 11:21:25,548 | INFO     | all workflow threads have been joined
[2025-06-05 13:49:29] 2025-06-05 11:21:25,548 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 13:49:29] 2025-06-05 11:21:25,548 | INFO     | traces error code: 0
[2025-06-05 13:49:29] 2025-06-05 11:21:25,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 13:49:29] 2025-06-05 11:21:25,961 [wrapper] ==== pilot stdout END ====
[2025-06-05 13:49:29] 2025-06-05 11:21:25,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 13:49:29] 2025-06-05 11:21:26,116 [wrapper] pilotpid: 11676
[2025-06-05 13:49:29] 2025-06-05 11:21:26,222 [wrapper] Pilot exit status: 0
[2025-06-05 13:49:29] 2025-06-05 11:21:26,599 [wrapper] pandaids: 6680051327
[2025-06-05 13:49:29] 2025-06-05 11:21:27,562 [wrapper] cleanup supervisor_pilot 30374 11677
[2025-06-05 13:49:29] 2025-06-05 11:21:27,616 [wrapper] Test setup, not cleaning
[2025-06-05 13:49:29] 2025-06-05 11:21:27,668 [wrapper] apfmon messages muted
[2025-06-05 13:49:29] 2025-06-05 11:21:27,725 [wrapper] ==== wrapper stdout END ====
[2025-06-05 13:49:29] 2025-06-05 11:21:27,837 [wrapper] ==== wrapper stderr END ====
[2025-06-05 13:49:29]  *** Error codes and diagnostics ***
[2025-06-05 13:49:29]     "exeErrorCode": 0,
[2025-06-05 13:49:29]     "exeErrorDiag": "",
[2025-06-05 13:49:29]     "pilotErrorCode": 0,
[2025-06-05 13:49:29]     "pilotErrorDiag": "",
[2025-06-05 13:49:29]  *** Listing of results directory ***
[2025-06-05 13:49:29] total 391436
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc    495897 Jun  4 22:38 pilot3.tar.gz
[2025-06-05 13:49:29] -rwx------. 1 boinc boinc     37140 Jun  4 23:06 runpilot2-wrapper.sh
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc      5111 Jun  4 23:06 queuedata.json
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc       100 Jun  5 09:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 13:49:29] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 09:28 run_atlas
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc       105 Jun  5 09:28 job.xml
[2025-06-05 13:49:29] -rw-r--r--. 2 boinc boinc 216069168 Jun  5 09:28 EVNT.45006593._001864.pool.root.1
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc      6392 Jun  5 09:28 init_data.xml
[2025-06-05 13:49:29] -rw-r--r--. 2 boinc boinc     15093 Jun  5 09:28 start_atlas.sh
[2025-06-05 13:49:29] drwxrwx--x. 2 boinc boinc        68 Jun  5 09:28 shared
[2025-06-05 13:49:29] -rw-r--r--. 2 boinc boinc    508880 Jun  5 09:28 input.tar.gz
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc         0 Jun  5 09:28 boinc_lockfile
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc      2524 Jun  5 09:28 pandaJob.out
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc    983087 Jun  5 09:31 agis_schedconf.cvmfs.json
[2025-06-05 13:49:29] drwx------. 4 boinc boinc      4096 Jun  5 09:31 pilot3
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc 177811008 Jun  5 13:18 HITS.45006595._056932.pool.root.1
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc       531 Jun  5 13:18 boinc_task_state.xml
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc      1016 Jun  5 13:19 memory_monitor_summary.json
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc   1598969 Jun  5 13:19 agis_ddmendpoints.agis.ALL.json
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc    393632 Jun  5 13:19 log.45006595._056932.job.log.tgz.1
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc      7693 Jun  5 13:21 heartbeat.json
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc        95 Jun  5 13:21 pilot_heartbeat.json
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc      4540 Jun  5 13:21 pilotlog.txt
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc   1170696 Jun  5 13:21 log.45006595._056932.job.log.1
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc       357 Jun  5 13:21 output.list
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc       620 Jun  5 13:21 runtime_log
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc   1587200 Jun  5 13:21 result.tar.gz
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc      8673 Jun  5 13:21 runtime_log.err
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc       657 Jun  5 13:21 cSBLDmZUAh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm32nKDmZd4Fjm.diag
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc      8192 Jun  5 13:49 boinc_mmap_file
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc        28 Jun  5 13:49 wrapper_checkpoint.txt
[2025-06-05 13:49:29] -rw-r--r--. 1 boinc boinc     20492 Jun  5 13:49 stderr.txt
[2025-06-05 13:49:29] HITS file was successfully produced:
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc 177811008 Jun  5 13:18 shared/HITS.pool.root.1
[2025-06-05 13:49:29]  *** Contents of shared directory: ***
[2025-06-05 13:49:29] total 386720
[2025-06-05 13:49:29] -rw-r--r--. 2 boinc boinc 216069168 Jun  5 09:28 ATLAS.root_0
[2025-06-05 13:49:29] -rw-r--r--. 2 boinc boinc     15093 Jun  5 09:28 start_atlas.sh
[2025-06-05 13:49:29] -rw-r--r--. 2 boinc boinc    508880 Jun  5 09:28 input.tar.gz
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc 177811008 Jun  5 13:18 HITS.pool.root.1
[2025-06-05 13:49:29] -rw-------. 1 boinc boinc   1587200 Jun  5 13:21 result.tar.gz
13:49:31 (5523): run_atlas exited; CPU time 49319.198864
13:49:31 (5523): called boinc_finish(0)

</stderr_txt>
]]>

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