Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:42:40 (5823): wrapper (7.7.26015): starting
07:42:40 (5823): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 07:42:40] Arguments: --nthreads 8
[2025-06-05 07:42:40] Threads: 8
[2025-06-05 07:42:40] Checking for CVMFS
[2025-06-05 07:42:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 07:42:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 07:42:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 07:42:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 07:42:43] 2.11.2.0 15599 34255 90364 146807 3 59 22841334 25165824 3132 130560 0 18197187 99.793 20386971 2022 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 07:42:43] CVMFS is ok
[2025-06-05 07:42:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 07:42:43] Checking for apptainer binary...
[2025-06-05 07:42:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 07:42:43] Running /usr/bin/apptainer --version
[2025-06-05 07:42:43] apptainer version 1.3.2-1.el7
[2025-06-05 07:42:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:17:54] cg-vwn263.simple-grid.lan
[2025-06-05 11:17:54] apptainer works
[2025-06-05 11:17:54] Set ATHENA_PROC_NUMBER=8
[2025-06-05 11:17:54] Set ATHENA_CORE_NUMBER=8
[2025-06-05 11:17:54] Starting ATLAS job with PandaID=6677862366
[2025-06-05 11:17:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:12:54]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:12:54] 2025-06-05 13:09:05,083 | INFO     | extracted standard info from prmon json
[2025-06-05 17:12:54] 2025-06-05 13:09:05,083 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:12:54] 2025-06-05 13:09:05,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:12:54] 2025-06-05 13:09:05,084 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:12:54] 2025-06-05 13:09:05,084 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:12:54] 2025-06-05 13:09:05,089 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:12:54] 2025-06-05 13:09:05,089 | INFO     | sum of square deviations: 3081657780.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,093 | INFO     | sum of deviations: 71831458412.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,094 | INFO     | mean x: 1749122295.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,094 | INFO     | mean y: 2425993.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,094 | INFO     | -- intersect: -40768488352.587875
[2025-06-05 17:12:54] 2025-06-05 13:09:05,094 | INFO     | intersect: -40768488352.587875
[2025-06-05 17:12:54] 2025-06-05 13:09:05,094 | INFO     | chi2: 7.293037760540914
[2025-06-05 17:12:54] 2025-06-05 13:09:05,095 | INFO     | sum of square deviations: 2871616632.5
[2025-06-05 17:12:54] 2025-06-05 13:09:05,096 | INFO     | sum of deviations: 84087275363.99997
[2025-06-05 17:12:54] 2025-06-05 13:09:05,096 | INFO     | mean x: 1749122142.5
[2025-06-05 17:12:54] 2025-06-05 13:09:05,096 | INFO     | mean y: 2434697.8
[2025-06-05 17:12:54] 2025-06-05 13:09:05,096 | INFO     | -- intersect: -51215723595.712074
[2025-06-05 17:12:54] 2025-06-05 13:09:05,097 | INFO     | intersect: -51215723595.712074
[2025-06-05 17:12:54] 2025-06-05 13:09:05,097 | INFO     | chi2: 6.596871847040125
[2025-06-05 17:12:54] 2025-06-05 13:09:05,097 | INFO     | current chi2=6.596871847040125 (change=9.545623324033837 %)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,097 | INFO     | right removable region: 209
[2025-06-05 17:12:54] 2025-06-05 13:09:05,098 | INFO     | sum of square deviations: 2871616632.5
[2025-06-05 17:12:54] 2025-06-05 13:09:05,099 | INFO     | sum of deviations: -1858548274.4999943
[2025-06-05 17:12:54] 2025-06-05 13:09:05,099 | INFO     | mean x: 1749122447.5
[2025-06-05 17:12:54] 2025-06-05 13:09:05,099 | INFO     | mean y: 2479444.4238095237
[2025-06-05 17:12:54] 2025-06-05 13:09:05,099 | INFO     | -- intersect: 1134534632.396514
[2025-06-05 17:12:54] 2025-06-05 13:09:05,100 | INFO     | intersect: 1134534632.396514
[2025-06-05 17:12:54] 2025-06-05 13:09:05,100 | INFO     | chi2: 2.4123861545321956
[2025-06-05 17:12:54] 2025-06-05 13:09:05,100 | INFO     | current chi2=2.4123861545321956 (change=66.92206685690775 %)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,100 | INFO     | sum of square deviations: 2671343110.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,102 | INFO     | sum of deviations: -38708423764.00001
[2025-06-05 17:12:54] 2025-06-05 13:09:05,102 | INFO     | mean x: 1749122600.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,102 | INFO     | mean y: 2507321.7609756095
[2025-06-05 17:12:54] 2025-06-05 13:09:05,102 | INFO     | -- intersect: 25347727320.84581
[2025-06-05 17:12:54] 2025-06-05 13:09:05,102 | INFO     | intersect: 25347727320.84581
[2025-06-05 17:12:54] 2025-06-05 13:09:05,103 | INFO     | chi2: 0.9744998406601959
[2025-06-05 17:12:54] 2025-06-05 13:09:05,103 | INFO     | current chi2=0.9744998406601959 (change=59.60431795592158 %)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,107 | INFO     | sum of square deviations: 2480604650.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,109 | INFO     | sum of deviations: -41007987551.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,109 | INFO     | mean x: 1749122752.5
[2025-06-05 17:12:54] 2025-06-05 13:09:05,109 | INFO     | mean y: 2509116.83
[2025-06-05 17:12:54] 2025-06-05 13:09:05,109 | INFO     | -- intersect: 28918041489.02436
[2025-06-05 17:12:54] 2025-06-05 13:09:05,110 | INFO     | intersect: 28918041489.02436
[2025-06-05 17:12:54] 2025-06-05 13:09:05,110 | INFO     | chi2: 0.9423625326268927
[2025-06-05 17:12:54] 2025-06-05 13:09:05,110 | INFO     | current chi2=0.9423625326268927 (change=3.2978258889740877 %)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,110 | INFO     | left removable region: 30
[2025-06-05 17:12:54] 2025-06-05 13:09:05,110 | INFO     | sum of square deviations: 1778377530.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,111 | INFO     | sum of deviations: -7378787286.000001
[2025-06-05 17:12:54] 2025-06-05 13:09:05,112 | INFO     | mean x: 1749123027.0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,112 | INFO     | mean y: 2502209.100558659
[2025-06-05 17:12:54] 2025-06-05 13:09:05,112 | INFO     | -- intersect: 7259907644.985388
[2025-06-05 17:12:54] 2025-06-05 13:09:05,116 | INFO     | intersect: 7259907644.985388
[2025-06-05 17:12:54] 2025-06-05 13:09:05,117 | INFO     | chi2: 0.07693435995809894
[2025-06-05 17:12:54] 2025-06-05 13:09:05,117 | INFO     | -- intersect: 7259907644.985388
[2025-06-05 17:12:54] 2025-06-05 13:09:05,117 | INFO     | current memory leak: -4.15 B/s (using 179 data points, chi2=0.08)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,118 | INFO     | ..............................
[2025-06-05 17:12:54] 2025-06-05 13:09:05,118 | INFO     | . Timing measurements:
[2025-06-05 17:12:54] 2025-06-05 13:09:05,118 | INFO     | . get job = 0 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,118 | INFO     | . initial setup = 5 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,118 | INFO     | . payload setup = 175 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,119 | INFO     | . stage-in = 0 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,119 | INFO     | . payload execution = 13221 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,119 | INFO     | . stage-out = 3 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,119 | INFO     | . log creation = 1 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,119 | INFO     | ..............................
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | 
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | job summary report
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | --------------------------------------------------
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | PanDA job id: 6677862366
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | task id: 45006595
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | errors: (none)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:12:54] 2025-06-05 13:09:05,259 | INFO     | pilot state: finished 
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | transexitcode: 0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | exeerrorcode: 0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | exeerrordiag: 
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | exitcode: 0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | exitmsg: OK
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | cpuconsumptiontime: 48783 s
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | nevents: 400
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | neventsw: 0
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | pid: 5095
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | pgrp: 5095
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | corecount: 8
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | event service: False
[2025-06-05 17:12:54] 2025-06-05 13:09:05,260 | INFO     | sizes: {0: 2397172, 1: 2397371, 12: 2397371, 23: 2397399, 33: 2397427, 44: 2397483, 55: 2397639, 66: 2397667, 76: 2397695, 82: 2397957, 87: 2398013, 13401: 2427560
[2025-06-05 17:12:54] 2025-06-05 13:09:05,261 | INFO     | --------------------------------------------------
[2025-06-05 17:12:54] 2025-06-05 13:09:05,261 | INFO     | 
[2025-06-05 17:12:54] 2025-06-05 13:09:05,261 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-05 17:12:54] 2025-06-05 13:09:05,682 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:12:54] 2025-06-05 13:09:05,685 | INFO     | job 6677862366 has completed (purged errors)
[2025-06-05 17:12:54] 2025-06-05 13:09:05,685 | INFO     | overall cleanup function is called
[2025-06-05 17:12:54] 2025-06-05 13:09:06,694 | INFO     | --- collectZombieJob: --- 10, [5095]
[2025-06-05 17:12:54] 2025-06-05 13:09:06,695 | INFO     | zombie collector waiting for pid 5095
[2025-06-05 17:12:54] 2025-06-05 13:09:06,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:12:54] 2025-06-05 13:09:06,695 | INFO     | collected zombie processes
[2025-06-05 17:12:54] 2025-06-05 13:09:06,695 | INFO     | will attempt to kill all subprocesses of pid=5095
[2025-06-05 17:12:54] 2025-06-05 13:09:06,809 | INFO     | process IDs to be killed: [5095] (in reverse order)
[2025-06-05 17:12:54] 2025-06-05 13:09:07,914 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:12:54] 2025-06-05 13:09:07,915 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:12:54] 2025-06-05 13:09:07,919 | INFO     | did not find any defunct processes belonging to 5095
[2025-06-05 17:12:54] 2025-06-05 13:09:07,923 | INFO     | did not find any defunct processes belonging to 5095
[2025-06-05 17:12:54] 2025-06-05 13:09:07,923 | INFO     | ready for new job
[2025-06-05 17:12:54] 2025-06-05 13:09:07,924 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:12:54] 2025-06-05 13:09:07,926 | INFO     | **************************************
[2025-06-05 17:12:54] 2025-06-05 13:09:07,929 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:12:54] 2025-06-05 13:09:07,930 | INFO     | **************************************
[2025-06-05 17:12:54] 2025-06-05 13:09:07,930 | INFO     | 
[2025-06-05 17:12:54] 2025-06-05 13:09:07,930 | INFO     | pilot is running in a VM
[2025-06-05 17:12:54] 2025-06-05 13:09:07,930 | INFO     | architecture information:
[2025-06-05 17:12:54] 2025-06-05 13:09:07,948 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:12:54] 2025-06-05 13:09:08,235 | INFO     | cat /etc/os-release:
[2025-06-05 17:12:54] NAME="CentOS Linux"
[2025-06-05 17:12:54] VERSION="7 (Core)"
[2025-06-05 17:12:54] ID="centos"
[2025-06-05 17:12:54] ID_LIKE="rhel fedora"
[2025-06-05 17:12:54] VERSION_ID="7"
[2025-06-05 17:12:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:12:54] ANSI_COLOR="0;31"
[2025-06-05 17:12:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:12:54] HOME_URL="https://www.centos.org/"
[2025-06-05 17:12:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:12:54] 
[2025-06-05 17:12:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:12:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:12:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:12:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:12:54] 
[2025-06-05 17:12:54] 2025-06-05 13:09:08,236 | INFO     | **************************************
[2025-06-05 17:12:54] 2025-06-05 13:09:08,740 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-05 17:12:54] 2025-06-05 13:09:09,019 | INFO     | sufficient remaining disk space (497269342208 B)
[2025-06-05 17:12:54] 2025-06-05 13:09:09,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:12:54] 2025-06-05 13:09:09,020 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:12:54] 2025-06-05 13:09:09,020 | INFO     | update_server=False
[2025-06-05 17:12:54] 2025-06-05 13:09:09,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:12:54] 2025-06-05 13:09:09,021 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 17:12:54] 2025-06-05 13:09:09,022 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:12:54] 2025-06-05 13:09:09,022 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:12:54] 2025-06-05 13:09:09,022 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:12:54] 2025-06-05 13:09:09,126 | INFO     | all data control threads have been joined
[2025-06-05 17:12:54] 2025-06-05 13:09:09,361 | INFO     | all payload control threads have been joined
[2025-06-05 17:12:54] 2025-06-05 13:09:09,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:12:54] 2025-06-05 13:09:09,716 | INFO     | aborting loop
[2025-06-05 17:12:54] 2025-06-05 13:09:09,988 | INFO     | all job control threads have been joined
[2025-06-05 17:12:54] 2025-06-05 13:09:10,026 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:10,132 | INFO     | [data] control thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:10,178 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:12:54] 2025-06-05 13:09:10,274 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:12:54] 2025-06-05 13:09:10,367 | INFO     | [payload] control thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:10,536 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:10,714 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:12:54] 2025-06-05 13:09:10,721 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:10,946 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:10,993 | INFO     | [job] control thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:11,076 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:11,091 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:11,113 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:11,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:11,280 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:11,287 | INFO     | [job] validate thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:11,508 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:12,185 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:14,723 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:12:54] 2025-06-05 13:09:16,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564409636672)>', '<ExcThread(monitor, started 140563986761472)>']
[2025-06-05 17:12:54] 2025-06-05 13:09:17,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:12:54] 2025-06-05 13:09:17,070 | INFO     | [monitor] control thread has ended
[2025-06-05 17:12:54] 2025-06-05 13:09:21,388 | INFO     | all workflow threads have been joined
[2025-06-05 17:12:54] 2025-06-05 13:09:21,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:12:54] 2025-06-05 13:09:21,389 | INFO     | traces error code: 0
[2025-06-05 17:12:54] 2025-06-05 13:09:21,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:12:54] 2025-06-05 13:09:21,697 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:12:54] 2025-06-05 13:09:21,724 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:12:54] 2025-06-05 13:09:21,748 [wrapper] pilotpid: 28895
[2025-06-05 17:12:54] 2025-06-05 13:09:21,802 [wrapper] Pilot exit status: 0
[2025-06-05 17:12:54] 2025-06-05 13:09:22,041 [wrapper] pandaids: 6677862366
[2025-06-05 17:12:54] 2025-06-05 13:09:22,868 [wrapper] cleanup supervisor_pilot 11490 28896
[2025-06-05 17:12:54] 2025-06-05 13:09:22,961 [wrapper] Test setup, not cleaning
[2025-06-05 17:12:54] 2025-06-05 13:09:23,067 [wrapper] apfmon messages muted
[2025-06-05 17:12:54] 2025-06-05 13:09:23,157 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:12:54] 2025-06-05 13:09:23,212 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:12:54]  *** Error codes and diagnostics ***
[2025-06-05 17:12:54]     "exeErrorCode": 0,
[2025-06-05 17:12:54]     "exeErrorDiag": "",
[2025-06-05 17:12:54]     "pilotErrorCode": 0,
[2025-06-05 17:12:54]     "pilotErrorDiag": "",
[2025-06-05 17:12:54]  *** Listing of results directory ***
[2025-06-05 17:12:54] total 392460
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-05 17:12:54] -rwx------. 1 boinc boinc     37140 Jun  3 19:23 runpilot2-wrapper.sh
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:23 queuedata.json
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc       100 Jun  5 07:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:12:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 07:42 run_atlas
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc       105 Jun  5 07:42 job.xml
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc      6391 Jun  5 07:42 init_data.xml
[2025-06-05 17:12:54] -rw-r--r--. 2 boinc boinc 217328122 Jun  5 07:42 EVNT.45006593._001617.pool.root.1
[2025-06-05 17:12:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 07:42 start_atlas.sh
[2025-06-05 17:12:54] drwxrwx--x. 2 boinc boinc        68 Jun  5 07:42 shared
[2025-06-05 17:12:54] -rw-r--r--. 2 boinc boinc    508876 Jun  5 07:42 input.tar.gz
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc         0 Jun  5 07:42 boinc_lockfile
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc      2525 Jun  5 11:17 pandaJob.out
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc    983289 Jun  5 11:20 agis_schedconf.cvmfs.json
[2025-06-05 17:12:54] drwx------. 4 boinc boinc      4096 Jun  5 11:21 pilot3
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc 177625080 Jun  5 15:06 HITS.45006595._040356.pool.root.1
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc       531 Jun  5 15:06 boinc_task_state.xml
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc      1014 Jun  5 15:07 memory_monitor_summary.json
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc   1598969 Jun  5 15:07 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc    382415 Jun  5 15:07 log.45006595._040356.job.log.tgz.1
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc        95 Jun  5 15:08 pilot_heartbeat.json
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc      7686 Jun  5 15:09 heartbeat.json
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc      4540 Jun  5 15:09 pilotlog.txt
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc   1171570 Jun  5 15:09 log.45006595._040356.job.log.1
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc       357 Jun  5 15:09 output.list
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc       620 Jun  5 15:09 runtime_log
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc   1576960 Jun  5 15:09 result.tar.gz
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc      8673 Jun  5 15:09 runtime_log.err
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc       657 Jun  5 15:09 3AgKDmWXkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTLlKDm1BzOFm.diag
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc      8192 Jun  5 17:12 boinc_mmap_file
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc        28 Jun  5 17:12 wrapper_checkpoint.txt
[2025-06-05 17:12:54] -rw-r--r--. 1 boinc boinc     20479 Jun  5 17:12 stderr.txt
[2025-06-05 17:12:54] HITS file was successfully produced:
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc 177625080 Jun  5 15:06 shared/HITS.pool.root.1
[2025-06-05 17:12:54]  *** Contents of shared directory: ***
[2025-06-05 17:12:54] total 387756
[2025-06-05 17:12:54] -rw-r--r--. 2 boinc boinc 217328122 Jun  5 07:42 ATLAS.root_0
[2025-06-05 17:12:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 07:42 start_atlas.sh
[2025-06-05 17:12:54] -rw-r--r--. 2 boinc boinc    508876 Jun  5 07:42 input.tar.gz
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc 177625080 Jun  5 15:06 HITS.pool.root.1
[2025-06-05 17:12:54] -rw-------. 1 boinc boinc   1576960 Jun  5 15:09 result.tar.gz
17:12:56 (5823): run_atlas exited; CPU time 48963.042313
17:12:56 (5823): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN