Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:45:17 (13259): wrapper (7.7.26015): starting
16:45:17 (13259): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 16:45:17] Arguments: --nthreads 8
[2025-06-04 16:45:17] Threads: 8
[2025-06-04 16:45:17] Checking for CVMFS
[2025-06-04 16:45:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:45:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:45:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:45:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:45:17] 2.11.2.0 2910 36132 73104 146793 1 1 18796988 20275200 1 130560 0 12029278 99.977 6398496 7753 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 16:45:17] CVMFS is ok
[2025-06-04 16:45:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:45:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:45:17] Further information can be found at the LHC@home message board.
[2025-06-04 16:45:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:45:17] Checking for apptainer binary...
[2025-06-04 16:45:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:45:17] Running /usr/bin/apptainer --version
[2025-06-04 16:45:17] apptainer version 1.3.2-1.el7
[2025-06-04 16:45:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:45:19] c-115-2.aglt2.org
[2025-06-04 16:45:19] apptainer works
[2025-06-04 16:45:19] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:45:19] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:45:19] Starting ATLAS job with PandaID=6668326358
[2025-06-04 16:45:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 19:19:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 19:19:11] 2025-06-04 23:18:45,602 | INFO     | -- intersect: 22492453017.097095
[2025-06-04 19:19:11] 2025-06-04 23:18:45,602 | INFO     | current memory leak: -12.86 B/s (using 124 data points, chi2=0.09)
[2025-06-04 19:19:11] 2025-06-04 23:18:45,606 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 19:19:11] 2025-06-04 23:18:48,106 | INFO     | monitor loop #679: job 0:6668326358 is in state 'finished'
[2025-06-04 19:19:11] 2025-06-04 23:18:48,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:19:11] 2025-06-04 23:18:50,609 | INFO     | monitor loop #680: job 0:6668326358 is in state 'finished'
[2025-06-04 19:19:11] 2025-06-04 23:18:50,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,097 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 19:19:11] 2025-06-04 23:18:51,098 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668326358/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,099 | INFO     | extracted standard info from prmon json
[2025-06-04 19:19:11] 2025-06-04 23:18:51,099 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 19:19:11] 2025-06-04 23:18:51,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 19:19:11] 2025-06-04 23:18:51,100 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 19:19:11] 2025-06-04 23:18:51,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 19:19:11] 2025-06-04 23:18:51,104 | INFO     | fitting pss+swap vs Time
[2025-06-04 19:19:11] 2025-06-04 23:18:51,105 | INFO     | sum of square deviations: 1046484737.5
[2025-06-04 19:19:11] 2025-06-04 23:18:51,106 | INFO     | sum of deviations: 3690198873.5000005
[2025-06-04 19:19:11] 2025-06-04 23:18:51,106 | INFO     | mean x: 1749074513.5
[2025-06-04 19:19:11] 2025-06-04 23:18:51,106 | INFO     | mean y: 2508793.42
[2025-06-04 19:19:11] 2025-06-04 23:18:51,106 | INFO     | -- intersect: -6165218807.466546
[2025-06-04 19:19:11] 2025-06-04 23:18:51,106 | INFO     | intersect: -6165218807.466546
[2025-06-04 19:19:11] 2025-06-04 23:18:51,106 | INFO     | chi2: 1.6238531956328601
[2025-06-04 19:19:11] 2025-06-04 23:18:51,107 | INFO     | sum of square deviations: 945282840.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,108 | INFO     | sum of deviations: 3739956360.0000067
[2025-06-04 19:19:11] 2025-06-04 23:18:51,108 | INFO     | mean x: 1749074361.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,108 | INFO     | mean y: 2508865.027586207
[2025-06-04 19:19:11] 2025-06-04 23:18:51,108 | INFO     | -- intersect: -6917601713.235844
[2025-06-04 19:19:11] 2025-06-04 23:18:51,108 | INFO     | intersect: -6917601713.235844
[2025-06-04 19:19:11] 2025-06-04 23:18:51,108 | INFO     | chi2: 1.6250807037554762
[2025-06-04 19:19:11] 2025-06-04 23:18:51,109 | INFO     | current chi2=1.6250807037554762 (change=-0.07559230883169082 %)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,109 | INFO     | right removable region: 144
[2025-06-04 19:19:11] 2025-06-04 23:18:51,109 | INFO     | sum of square deviations: 945282840.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,110 | INFO     | sum of deviations: -18741001147.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,110 | INFO     | mean x: 1749074666.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,110 | INFO     | mean y: 2542061.703448276
[2025-06-04 19:19:11] 2025-06-04 23:18:51,110 | INFO     | -- intersect: 34679369921.70632
[2025-06-04 19:19:11] 2025-06-04 23:18:51,110 | INFO     | intersect: 34679369921.70632
[2025-06-04 19:19:11] 2025-06-04 23:18:51,111 | INFO     | chi2: 0.14416970706727636
[2025-06-04 19:19:11] 2025-06-04 23:18:51,111 | INFO     | current chi2=0.14416970706727636 (change=91.12175241856826 %)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,111 | INFO     | sum of square deviations: 850825255.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,112 | INFO     | sum of deviations: -17571422405.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,112 | INFO     | mean x: 1749074818.5
[2025-06-04 19:19:11] 2025-06-04 23:18:51,112 | INFO     | mean y: 2540081.7714285715
[2025-06-04 19:19:11] 2025-06-04 23:18:51,112 | INFO     | -- intersect: 36124801701.53519
[2025-06-04 19:19:11] 2025-06-04 23:18:51,112 | INFO     | intersect: 36124801701.53519
[2025-06-04 19:19:11] 2025-06-04 23:18:51,112 | INFO     | chi2: 0.12784668589872566
[2025-06-04 19:19:11] 2025-06-04 23:18:51,113 | INFO     | current chi2=0.12784668589872566 (change=11.322088045121438 %)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,113 | INFO     | left removable region: 20
[2025-06-04 19:19:11] 2025-06-04 23:18:51,113 | INFO     | sum of square deviations: 591173875.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,113 | INFO     | sum of deviations: -7601423195.0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,114 | INFO     | mean x: 1749074940.5
[2025-06-04 19:19:11] 2025-06-04 23:18:51,114 | INFO     | mean y: 2523429.9516129033
[2025-06-04 19:19:11] 2025-06-04 23:18:51,114 | INFO     | -- intersect: 22492453017.097095
[2025-06-04 19:19:11] 2025-06-04 23:18:51,114 | INFO     | intersect: 22492453017.097095
[2025-06-04 19:19:11] 2025-06-04 23:18:51,114 | INFO     | chi2: 0.08705189158376203
[2025-06-04 19:19:11] 2025-06-04 23:18:51,114 | INFO     | -- intersect: 22492453017.097095
[2025-06-04 19:19:11] 2025-06-04 23:18:51,115 | INFO     | current memory leak: -12.86 B/s (using 124 data points, chi2=0.09)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,115 | INFO     | ..............................
[2025-06-04 19:19:11] 2025-06-04 23:18:51,115 | INFO     | . Timing measurements:
[2025-06-04 19:19:11] 2025-06-04 23:18:51,115 | INFO     | . get job = 0 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,115 | INFO     | . initial setup = 2 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,116 | INFO     | . payload setup = 11 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,116 | INFO     | . stage-in = 0 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,116 | INFO     | . payload execution = 9148 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,116 | INFO     | . stage-out = 0 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,116 | INFO     | . log creation = 0 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,116 | INFO     | ..............................
[2025-06-04 19:19:11] 2025-06-04 23:18:51,640 | INFO     | 
[2025-06-04 19:19:11] 2025-06-04 23:18:51,640 | INFO     | job summary report
[2025-06-04 19:19:11] 2025-06-04 23:18:51,640 | INFO     | --------------------------------------------------
[2025-06-04 19:19:11] 2025-06-04 23:18:51,641 | INFO     | PanDA job id: 6668326358
[2025-06-04 19:19:11] 2025-06-04 23:18:51,641 | INFO     | task id: 44871837
[2025-06-04 19:19:11] 2025-06-04 23:18:51,641 | INFO     | errors: (none)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,641 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 19:19:11] 2025-06-04 23:18:51,641 | INFO     | pilot state: finished 
[2025-06-04 19:19:11] 2025-06-04 23:18:51,641 | INFO     | transexitcode: 0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | exeerrorcode: 0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | exeerrordiag: 
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | exitcode: 0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | exitmsg: OK
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | cpuconsumptiontime: 66273 s
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | nevents: 400
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | neventsw: 0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,642 | INFO     | pid: 23476
[2025-06-04 19:19:11] 2025-06-04 23:18:51,643 | INFO     | pgrp: 23476
[2025-06-04 19:19:11] 2025-06-04 23:18:51,643 | INFO     | corecount: 8
[2025-06-04 19:19:11] 2025-06-04 23:18:51,643 | INFO     | event service: False
[2025-06-04 19:19:11] 2025-06-04 23:18:51,643 | INFO     | sizes: {0: 2396563, 1: 2397419, 7: 2397625, 12: 2397653, 9164: 2425773, 9165: 2434714, 9168: 2434898, 9179: 2435068}
[2025-06-04 19:19:11] 2025-06-04 23:18:51,643 | INFO     | --------------------------------------------------
[2025-06-04 19:19:11] 2025-06-04 23:18:51,643 | INFO     | 
[2025-06-04 19:19:11] 2025-06-04 23:18:51,643 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 19:19:11] 2025-06-04 23:18:51,672 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,672 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,672 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,673 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,673 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,673 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,673 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,673 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,673 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,674 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,674 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,674 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,676 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 19:19:11] 2025-06-04 23:18:51,676 | INFO     | job 6668326358 has completed (purged errors)
[2025-06-04 19:19:11] 2025-06-04 23:18:51,676 | INFO     | overall cleanup function is called
[2025-06-04 19:19:11] 2025-06-04 23:18:52,684 | INFO     | --- collectZombieJob: --- 10, [23476]
[2025-06-04 19:19:11] 2025-06-04 23:18:52,684 | INFO     | zombie collector waiting for pid 23476
[2025-06-04 19:19:11] 2025-06-04 23:18:52,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 19:19:11] 2025-06-04 23:18:52,685 | INFO     | collected zombie processes
[2025-06-04 19:19:11] 2025-06-04 23:18:52,685 | INFO     | will attempt to kill all subprocesses of pid=23476
[2025-06-04 19:19:11] 2025-06-04 23:18:52,772 | INFO     | process IDs to be killed: [23476] (in reverse order)
[2025-06-04 19:19:11] 2025-06-04 23:18:52,828 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 19:19:11] 2025-06-04 23:18:52,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 19:19:11] 2025-06-04 23:18:52,833 | INFO     | did not find any defunct processes belonging to 23476
[2025-06-04 19:19:11] 2025-06-04 23:18:52,836 | INFO     | did not find any defunct processes belonging to 23476
[2025-06-04 19:19:11] 2025-06-04 23:18:52,836 | INFO     | ready for new job
[2025-06-04 19:19:11] 2025-06-04 23:18:52,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 19:19:11] 2025-06-04 23:18:52,838 | INFO     | **************************************
[2025-06-04 19:19:11] 2025-06-04 23:18:52,838 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 19:19:11] 2025-06-04 23:18:52,838 | INFO     | **************************************
[2025-06-04 19:19:11] 2025-06-04 23:18:52,838 | INFO     | 
[2025-06-04 19:19:11] 2025-06-04 23:18:52,839 | INFO     | architecture information:
[2025-06-04 19:19:11] 2025-06-04 23:18:52,839 | INFO     | executing command: cat /etc/os-release
[2025-06-04 19:19:11] 2025-06-04 23:18:52,858 | INFO     | cat /etc/os-release:
[2025-06-04 19:19:11] NAME="CentOS Linux"
[2025-06-04 19:19:11] VERSION="7 (Core)"
[2025-06-04 19:19:11] ID="centos"
[2025-06-04 19:19:11] ID_LIKE="rhel fedora"
[2025-06-04 19:19:11] VERSION_ID="7"
[2025-06-04 19:19:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 19:19:11] ANSI_COLOR="0;31"
[2025-06-04 19:19:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 19:19:11] HOME_URL="https://www.centos.org/"
[2025-06-04 19:19:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 19:19:11] 
[2025-06-04 19:19:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 19:19:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 19:19:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 19:19:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 19:19:11] 
[2025-06-04 19:19:11] 2025-06-04 23:18:52,859 | INFO     | **************************************
[2025-06-04 19:19:11] 2025-06-04 23:18:53,362 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 19:19:11] 2025-06-04 23:18:53,382 | INFO     | sufficient remaining disk space (18598592512 B)
[2025-06-04 19:19:11] 2025-06-04 23:18:53,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 19:19:11] 2025-06-04 23:18:53,383 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 19:19:11] 2025-06-04 23:18:53,383 | INFO     | update_server=False
[2025-06-04 19:19:11] 2025-06-04 23:18:53,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 19:19:11] 2025-06-04 23:18:53,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 19:19:11] 2025-06-04 23:18:53,402 | INFO     | all payload control threads have been joined
[2025-06-04 19:19:11] 2025-06-04 23:18:53,928 | INFO     | all data control threads have been joined
[2025-06-04 19:19:11] 2025-06-04 23:18:53,993 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 19:19:11] 2025-06-04 23:18:53,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 19:19:11] 2025-06-04 23:18:53,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 19:19:11] 2025-06-04 23:18:54,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:19:11] 2025-06-04 23:18:54,118 | INFO     | aborting loop
[2025-06-04 19:19:11] 2025-06-04 23:18:54,389 | INFO     | [job] retrieve thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,393 | INFO     | [data] copytool_in thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,407 | INFO     | [payload] control thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,425 | INFO     | [payload] failed_post thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,679 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,719 | INFO     | [job] validate thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,772 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,933 | INFO     | [data] control thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:54,934 | INFO     | all job control threads have been joined
[2025-06-04 19:19:11] 2025-06-04 23:18:54,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 19:19:11] 2025-06-04 23:18:55,023 | INFO     | [payload] validate_post thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:55,124 | INFO     | [job] job monitor thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:55,386 | INFO     | [data] copytool_out thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:55,772 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:55,939 | INFO     | [job] control thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:56,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:19:11] 2025-06-04 23:18:57,223 | INFO     | [job] queue monitor thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:18:58,954 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:19:04,043 | INFO     | job.realtimelogging is not enabled
[2025-06-04 19:19:11] 2025-06-04 23:19:05,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 19:19:11] 2025-06-04 23:19:06,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006292412224)>', '<ExcThread(monitor, started 140005179643648)>']
[2025-06-04 19:19:11] 2025-06-04 23:19:07,058 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 19:19:11] 2025-06-04 23:19:07,058 | INFO     | [monitor] control thread has ended
[2025-06-04 19:19:11] 2025-06-04 23:19:11,603 | INFO     | all workflow threads have been joined
[2025-06-04 19:19:11] 2025-06-04 23:19:11,603 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 19:19:11] 2025-06-04 23:19:11,605 | INFO     | traces error code: 0
[2025-06-04 19:19:11] 2025-06-04 23:19:11,607 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 19:19:11] 2025-06-04 23:19:11,723 [wrapper] ==== pilot stdout END ====
[2025-06-04 19:19:11] 2025-06-04 23:19:11,729 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 19:19:11] 2025-06-04 23:19:11,733 [wrapper] pilotpid: 16922
[2025-06-04 19:19:11] 2025-06-04 23:19:11,737 [wrapper] Pilot exit status: 0
[2025-06-04 19:19:11] 2025-06-04 23:19:11,756 [wrapper] pandaids: 6668326358
[2025-06-04 19:19:11] 2025-06-04 23:19:11,803 [wrapper] cleanup supervisor_pilot 17154 16923
[2025-06-04 19:19:11] 2025-06-04 23:19:11,809 [wrapper] Test setup, not cleaning
[2025-06-04 19:19:11] 2025-06-04 23:19:11,814 [wrapper] apfmon messages muted
[2025-06-04 19:19:11] 2025-06-04 23:19:11,819 [wrapper] ==== wrapper stdout END ====
[2025-06-04 19:19:11] 2025-06-04 23:19:11,823 [wrapper] ==== wrapper stderr END ====
[2025-06-04 19:19:11]  *** Error codes and diagnostics ***
[2025-06-04 19:19:11]     "exeErrorCode": 0,
[2025-06-04 19:19:11]     "exeErrorDiag": "",
[2025-06-04 19:19:11]     "pilotErrorCode": 0,
[2025-06-04 19:19:11]     "pilotErrorDiag": "",
[2025-06-04 19:19:11]  *** Listing of results directory ***
[2025-06-04 19:19:11] total 420340
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas      5111 May 28 06:20 queuedata.json
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas    495897 May 28 06:20 pilot3.tar.gz
[2025-06-04 19:19:11] -rwx------ 1 boincer umatlas     37140 May 28 06:21 runpilot2-wrapper.sh
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas       100 Jun  4 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 19:19:11] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 16:45 run_atlas
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas       105 Jun  4 16:45 job.xml
[2025-06-04 19:19:11] -rw-r--r-- 2 boincer umatlas 226526244 Jun  4 16:45 EVNT.44871834._003230.pool.root.1
[2025-06-04 19:19:11] drwxrwx--x 2 boincer umatlas      4096 Jun  4 16:45 shared
[2025-06-04 19:19:11] -rw-r--r-- 2 boincer umatlas    508870 Jun  4 16:45 input.tar.gz
[2025-06-04 19:19:11] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 16:45 start_atlas.sh
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas         0 Jun  4 16:45 boinc_lockfile
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas      2558 Jun  4 16:45 pandaJob.out
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas    987032 Jun  4 16:45 agis_schedconf.cvmfs.json
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas   1598969 Jun  4 16:45 agis_ddmendpoints.agis.ALL.json
[2025-06-04 19:19:11] drwx------ 4 boincer umatlas      4096 Jun  4 16:45 pilot3
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas      5824 Jun  4 19:11 init_data.xml
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas 197711705 Jun  4 19:18 HITS.44871837._082762.pool.root.1
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas       529 Jun  4 19:18 boinc_task_state.xml
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas      1047 Jun  4 19:18 memory_monitor_summary.json
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas        95 Jun  4 19:18 pilot_heartbeat.json
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas    344169 Jun  4 19:18 log.44871837._082762.job.log.tgz.1
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas      7745 Jun  4 19:18 heartbeat.json
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas        27 Jun  4 19:19 wrapper_checkpoint.txt
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas      4425 Jun  4 19:19 pilotlog.txt
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas    834271 Jun  4 19:19 log.44871837._082762.job.log.1
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 19:19 boinc_mmap_file
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas       357 Jun  4 19:19 output.list
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas       620 Jun  4 19:19 runtime_log
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas   1198080 Jun  4 19:19 result.tar.gz
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 19:19 runtime_log.err
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas       660 Jun  4 19:19 huRMDm95Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcubKDmX9sFlm.diag
[2025-06-04 19:19:11] -rw-r--r-- 1 boincer umatlas     21076 Jun  4 19:19 stderr.txt
[2025-06-04 19:19:11] HITS file was successfully produced:
[2025-06-04 19:19:11] -rw------- 1 boincer umatlas 197711705 Jun  4 19:18 shared/HITS.pool.root.1
[2025-06-04 19:19:11]  *** Contents of shared directory: ***
[2025-06-04 19:19:12] total 415992
[2025-06-04 19:19:12] -rw-r--r-- 2 boincer umatlas 226526244 Jun  4 16:45 ATLAS.root_0
[2025-06-04 19:19:12] -rw-r--r-- 2 boincer umatlas    508870 Jun  4 16:45 input.tar.gz
[2025-06-04 19:19:12] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 16:45 start_atlas.sh
[2025-06-04 19:19:12] -rw------- 1 boincer umatlas 197711705 Jun  4 19:18 HITS.pool.root.1
[2025-06-04 19:19:12] -rw------- 1 boincer umatlas   1198080 Jun  4 19:19 result.tar.gz
19:19:13 (13259): run_atlas exited; CPU time 66225.473895
19:19:13 (13259): called boinc_finish(0)

</stderr_txt>
]]>

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