Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:49:57 (11608): wrapper (7.7.26015): starting
06:49:57 (11608): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 06:49:57] Arguments: --nthreads 8
[2025-06-05 06:49:57] Threads: 8
[2025-06-05 06:49:57] Checking for CVMFS
[2025-06-05 06:49:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 06:50:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 06:50:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 06:50:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 06:50:01] 2.11.2.0 31392 34202 96072 146806 0 16 16037933 25165825 4293 130560 0 18461949 99.771 20934094 2075 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 06:50:01] CVMFS is ok
[2025-06-05 06:50:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:50:01] Checking for apptainer binary...
[2025-06-05 06:50:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 06:50:01] Running /usr/bin/apptainer --version
[2025-06-05 06:50:02] apptainer version 1.3.2-1.el7
[2025-06-05 06:50:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 07:12:31] cg-vwn267.simple-grid.lan
[2025-06-05 07:12:31] apptainer works
[2025-06-05 07:12:31] Set ATHENA_PROC_NUMBER=8
[2025-06-05 07:12:31] Set ATHENA_CORE_NUMBER=8
[2025-06-05 07:12:31] Starting ATLAS job with PandaID=6680033937
[2025-06-05 07:12:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:39:48]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:39:48] 2025-06-05 08:56:38,906 | INFO     | extracted standard info from prmon json
[2025-06-05 11:39:48] 2025-06-05 08:56:38,906 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:39:48] 2025-06-05 08:56:38,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:39:48] 2025-06-05 08:56:38,907 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:39:48] 2025-06-05 08:56:38,907 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:39:48] 2025-06-05 08:56:38,911 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:39:48] 2025-06-05 08:56:38,912 | INFO     | sum of square deviations: 2790348132.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,914 | INFO     | sum of deviations: 79845178289.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,914 | INFO     | mean x: 1749107345.5
[2025-06-05 11:39:48] 2025-06-05 08:56:38,914 | INFO     | mean y: 2419299.730769231
[2025-06-05 11:39:48] 2025-06-05 08:56:38,914 | INFO     | -- intersect: -50047890282.23039
[2025-06-05 11:39:48] 2025-06-05 08:56:38,914 | INFO     | intersect: -50047890282.23039
[2025-06-05 11:39:48] 2025-06-05 08:56:38,915 | INFO     | chi2: 9.257215938551887
[2025-06-05 11:39:48] 2025-06-05 08:56:38,915 | INFO     | sum of square deviations: 2593916542.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,917 | INFO     | sum of deviations: 91594719152.99998
[2025-06-05 11:39:48] 2025-06-05 08:56:38,917 | INFO     | mean x: 1749107193.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,917 | INFO     | mean y: 2428213.9162561577
[2025-06-05 11:39:48] 2025-06-05 08:56:38,917 | INFO     | -- intersect: -61760924429.57336
[2025-06-05 11:39:48] 2025-06-05 08:56:38,918 | INFO     | intersect: -61760924429.57336
[2025-06-05 11:39:48] 2025-06-05 08:56:38,918 | INFO     | chi2: 8.592219710712978
[2025-06-05 11:39:48] 2025-06-05 08:56:38,918 | INFO     | current chi2=8.592219710712978 (change=7.183544515468382 %)
[2025-06-05 11:39:48] 2025-06-05 08:56:38,918 | INFO     | right removable region: 202
[2025-06-05 11:39:48] 2025-06-05 08:56:38,919 | INFO     | sum of square deviations: 2593916542.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,920 | INFO     | sum of deviations: 6535173023.999996
[2025-06-05 11:39:48] 2025-06-05 08:56:38,921 | INFO     | mean x: 1749107498.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,921 | INFO     | mean y: 2476183.748768473
[2025-06-05 11:39:48] 2025-06-05 08:56:38,921 | INFO     | -- intersect: -4404265495.068794
[2025-06-05 11:39:48] 2025-06-05 08:56:38,921 | INFO     | intersect: -4404265495.068794
[2025-06-05 11:39:48] 2025-06-05 08:56:38,921 | INFO     | chi2: 3.8248760039459695
[2025-06-05 11:39:48] 2025-06-05 08:56:38,922 | INFO     | current chi2=3.8248760039459695 (change=58.682221206300426 %)
[2025-06-05 11:39:48] 2025-06-05 08:56:38,922 | INFO     | sum of square deviations: 2406926989.5
[2025-06-05 11:39:48] 2025-06-05 08:56:38,923 | INFO     | sum of deviations: -46920842936.5
[2025-06-05 11:39:48] 2025-06-05 08:56:38,924 | INFO     | mean x: 1749107650.5
[2025-06-05 11:39:48] 2025-06-05 08:56:38,924 | INFO     | mean y: 2519686.287878788
[2025-06-05 11:39:48] 2025-06-05 08:56:38,924 | INFO     | -- intersect: 34099775525.855186
[2025-06-05 11:39:48] 2025-06-05 08:56:38,924 | INFO     | intersect: 34099775525.855186
[2025-06-05 11:39:48] 2025-06-05 08:56:38,924 | INFO     | chi2: 1.110767823974259
[2025-06-05 11:39:48] 2025-06-05 08:56:38,924 | INFO     | current chi2=1.110767823974259 (change=70.95937690977891 %)
[2025-06-05 11:39:48] 2025-06-05 08:56:38,925 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,926 | INFO     | sum of deviations: -54807954172.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,927 | INFO     | mean x: 1749107803.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,927 | INFO     | mean y: 2526391.958549223
[2025-06-05 11:39:48] 2025-06-05 08:56:38,927 | INFO     | -- intersect: 43007776423.99933
[2025-06-05 11:39:48] 2025-06-05 08:56:38,927 | INFO     | intersect: 43007776423.99933
[2025-06-05 11:39:48] 2025-06-05 08:56:38,927 | INFO     | chi2: 0.9881469919395816
[2025-06-05 11:39:48] 2025-06-05 08:56:38,927 | INFO     | current chi2=0.9881469919395816 (change=11.039285563381531 %)
[2025-06-05 11:39:48] 2025-06-05 08:56:38,927 | INFO     | left removable region: 30
[2025-06-05 11:39:48] 2025-06-05 08:56:38,928 | INFO     | sum of square deviations: 1577789583.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,929 | INFO     | sum of deviations: -23379465852.0
[2025-06-05 11:39:48] 2025-06-05 08:56:38,929 | INFO     | mean x: 1749108077.5
[2025-06-05 11:39:48] 2025-06-05 08:56:38,929 | INFO     | mean y: 2521533.9534883723
[2025-06-05 11:39:48] 2025-06-05 08:56:38,930 | INFO     | -- intersect: 25920560929.05109
[2025-06-05 11:39:48] 2025-06-05 08:56:38,930 | INFO     | intersect: 25920560929.05109
[2025-06-05 11:39:48] 2025-06-05 08:56:38,930 | INFO     | chi2: 0.16536140943150837
[2025-06-05 11:39:48] 2025-06-05 08:56:38,930 | INFO     | -- intersect: 25920560929.05109
[2025-06-05 11:39:48] 2025-06-05 08:56:38,930 | INFO     | current memory leak: -14.82 B/s (using 172 data points, chi2=0.17)
[2025-06-05 11:39:48] 2025-06-05 08:56:38,931 | INFO     | ..............................
[2025-06-05 11:39:48] 2025-06-05 08:56:38,931 | INFO     | . Timing measurements:
[2025-06-05 11:39:48] 2025-06-05 08:56:38,931 | INFO     | . get job = 0 s
[2025-06-05 11:39:48] 2025-06-05 08:56:38,932 | INFO     | . initial setup = 10 s
[2025-06-05 11:39:48] 2025-06-05 08:56:38,932 | INFO     | . payload setup = 145 s
[2025-06-05 11:39:48] 2025-06-05 08:56:38,932 | INFO     | . stage-in = 0 s
[2025-06-05 11:39:48] 2025-06-05 08:56:38,932 | INFO     | . payload execution = 12800 s
[2025-06-05 11:39:48] 2025-06-05 08:56:38,932 | INFO     | . stage-out = 3 s
[2025-06-05 11:39:48] 2025-06-05 08:56:38,932 | INFO     | . log creation = 1 s
[2025-06-05 11:39:48] 2025-06-05 08:56:38,932 | INFO     | ..............................
[2025-06-05 11:39:48] 2025-06-05 08:56:39,137 | INFO     | 
[2025-06-05 11:39:48] 2025-06-05 08:56:39,137 | INFO     | job summary report
[2025-06-05 11:39:48] 2025-06-05 08:56:39,137 | INFO     | --------------------------------------------------
[2025-06-05 11:39:48] 2025-06-05 08:56:39,137 | INFO     | PanDA job id: 6680033937
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | task id: 45006595
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | errors: (none)
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | pilot state: finished 
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | transexitcode: 0
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | exeerrorcode: 0
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | exeerrordiag: 
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | exitcode: 0
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | exitmsg: OK
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | cpuconsumptiontime: 46803 s
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | nevents: 400
[2025-06-05 11:39:48] 2025-06-05 08:56:39,138 | INFO     | neventsw: 0
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | pid: 6413
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | pgrp: 6413
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | corecount: 8
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | event service: False
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | sizes: {0: 2396413, 1: 2397269, 2: 2397297, 13: 2397297, 24: 2397353, 34: 2397381, 45: 2397537, 56: 2397565, 67: 2397593, 77: 2397621, 88: 2397677, 92: 2398191, 99
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | --------------------------------------------------
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | 
[2025-06-05 11:39:48] 2025-06-05 08:56:39,139 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 11:39:48] 2025-06-05 08:56:39,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,798 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,799 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:39:48] 2025-06-05 08:56:39,800 | INFO     | job 6680033937 has completed (purged errors)
[2025-06-05 11:39:48] 2025-06-05 08:56:39,800 | INFO     | overall cleanup function is called
[2025-06-05 11:39:48] 2025-06-05 08:56:40,809 | INFO     | --- collectZombieJob: --- 10, [6413]
[2025-06-05 11:39:48] 2025-06-05 08:56:40,809 | INFO     | zombie collector waiting for pid 6413
[2025-06-05 11:39:48] 2025-06-05 08:56:40,809 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:39:48] 2025-06-05 08:56:40,810 | INFO     | collected zombie processes
[2025-06-05 11:39:48] 2025-06-05 08:56:40,810 | INFO     | will attempt to kill all subprocesses of pid=6413
[2025-06-05 11:39:48] 2025-06-05 08:56:40,913 | INFO     | process IDs to be killed: [6413] (in reverse order)
[2025-06-05 11:39:48] 2025-06-05 08:56:41,781 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:39:48] 2025-06-05 08:56:41,781 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:39:48] 2025-06-05 08:56:41,784 | INFO     | did not find any defunct processes belonging to 6413
[2025-06-05 11:39:48] 2025-06-05 08:56:41,794 | INFO     | did not find any defunct processes belonging to 6413
[2025-06-05 11:39:48] 2025-06-05 08:56:41,794 | INFO     | ready for new job
[2025-06-05 11:39:48] 2025-06-05 08:56:41,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:39:48] 2025-06-05 08:56:41,796 | INFO     | **************************************
[2025-06-05 11:39:48] 2025-06-05 08:56:41,797 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:39:48] 2025-06-05 08:56:41,797 | INFO     | **************************************
[2025-06-05 11:39:48] 2025-06-05 08:56:41,797 | INFO     | 
[2025-06-05 11:39:48] 2025-06-05 08:56:41,797 | INFO     | pilot is running in a VM
[2025-06-05 11:39:48] 2025-06-05 08:56:41,797 | INFO     | architecture information:
[2025-06-05 11:39:48] 2025-06-05 08:56:41,810 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:39:48] 2025-06-05 08:56:42,065 | INFO     | cat /etc/os-release:
[2025-06-05 11:39:48] NAME="CentOS Linux"
[2025-06-05 11:39:48] VERSION="7 (Core)"
[2025-06-05 11:39:48] ID="centos"
[2025-06-05 11:39:48] ID_LIKE="rhel fedora"
[2025-06-05 11:39:48] VERSION_ID="7"
[2025-06-05 11:39:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:39:48] ANSI_COLOR="0;31"
[2025-06-05 11:39:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:39:48] HOME_URL="https://www.centos.org/"
[2025-06-05 11:39:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:39:48] 
[2025-06-05 11:39:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:39:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:39:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:39:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:39:48] 
[2025-06-05 11:39:48] 2025-06-05 08:56:42,065 | INFO     | **************************************
[2025-06-05 11:39:48] 2025-06-05 08:56:42,571 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 11:39:48] 2025-06-05 08:56:42,807 | INFO     | sufficient remaining disk space (496797483008 B)
[2025-06-05 11:39:48] 2025-06-05 08:56:42,807 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:39:48] 2025-06-05 08:56:42,808 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:39:48] 2025-06-05 08:56:42,808 | INFO     | update_server=False
[2025-06-05 11:39:48] 2025-06-05 08:56:42,808 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:39:48] 2025-06-05 08:56:42,809 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:39:48] 2025-06-05 08:56:42,809 | INFO     | aborting loop
[2025-06-05 11:39:48] 2025-06-05 08:56:42,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:39:48] 2025-06-05 08:56:42,816 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 11:39:48] 2025-06-05 08:56:42,816 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:39:48] 2025-06-05 08:56:42,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:39:48] 2025-06-05 08:56:42,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:39:48] 2025-06-05 08:56:43,083 | INFO     | all data control threads have been joined
[2025-06-05 11:39:48] 2025-06-05 08:56:43,813 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:43,815 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,089 | INFO     | [data] control thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,108 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,156 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:39:48] 2025-06-05 08:56:44,178 | INFO     | all job control threads have been joined
[2025-06-05 11:39:48] 2025-06-05 08:56:44,268 | INFO     | all payload control threads have been joined
[2025-06-05 11:39:48] 2025-06-05 08:56:44,274 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,438 | INFO     | [job] validate thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,526 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,671 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,822 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:44,892 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:45,011 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:45,121 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:45,162 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:45,184 | INFO     | [job] control thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:45,275 | INFO     | [payload] control thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:46,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:39:48] 2025-06-05 08:56:50,073 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:39:48] 2025-06-05 08:56:50,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268281005888)>', '<ExcThread(monitor, started 140267843737344)>']
[2025-06-05 11:39:48] 2025-06-05 08:56:50,866 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:39:48] 2025-06-05 08:56:50,866 | INFO     | [monitor] control thread has ended
[2025-06-05 11:39:48] 2025-06-05 08:56:55,244 | INFO     | all workflow threads have been joined
[2025-06-05 11:39:48] 2025-06-05 08:56:55,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:39:48] 2025-06-05 08:56:55,245 | INFO     | traces error code: 0
[2025-06-05 11:39:48] 2025-06-05 08:56:55,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:39:48] 2025-06-05 08:56:55,605 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:39:48] 2025-06-05 08:56:55,691 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:39:48] 2025-06-05 08:56:55,752 [wrapper] pilotpid: 32163
[2025-06-05 11:39:48] 2025-06-05 08:56:55,824 [wrapper] Pilot exit status: 0
[2025-06-05 11:39:48] 2025-06-05 08:56:56,294 [wrapper] pandaids: 6680033937
[2025-06-05 11:39:48] 2025-06-05 08:56:56,976 [wrapper] cleanup supervisor_pilot  9844 32164
[2025-06-05 11:39:48] 2025-06-05 08:56:57,089 [wrapper] Test setup, not cleaning
[2025-06-05 11:39:48] 2025-06-05 08:56:57,192 [wrapper] apfmon messages muted
[2025-06-05 11:39:48] 2025-06-05 08:56:57,300 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:39:48] 2025-06-05 08:56:57,395 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:39:48]  *** Error codes and diagnostics ***
[2025-06-05 11:39:48]     "exeErrorCode": 0,
[2025-06-05 11:39:48]     "exeErrorDiag": "",
[2025-06-05 11:39:48]     "pilotErrorCode": 0,
[2025-06-05 11:39:48]     "pilotErrorDiag": "",
[2025-06-05 11:39:48]  *** Listing of results directory ***
[2025-06-05 11:39:48] total 385064
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc      5111 Jun  4 22:38 queuedata.json
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc    495897 Jun  4 22:38 pilot3.tar.gz
[2025-06-05 11:39:48] -rwx------. 1 boinc boinc     37140 Jun  4 22:39 runpilot2-wrapper.sh
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc       100 Jun  5 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:39:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 06:49 run_atlas
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc       105 Jun  5 06:49 job.xml
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc      6391 Jun  5 06:49 init_data.xml
[2025-06-05 11:39:48] -rw-r--r--. 2 boinc boinc 215114660 Jun  5 06:49 EVNT.45006593._001891.pool.root.1
[2025-06-05 11:39:48] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:49 start_atlas.sh
[2025-06-05 11:39:48] drwxrwx--x. 2 boinc boinc        68 Jun  5 06:49 shared
[2025-06-05 11:39:48] -rw-r--r--. 2 boinc boinc    508890 Jun  5 06:49 input.tar.gz
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc         0 Jun  5 06:49 boinc_lockfile
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc      2524 Jun  5 07:12 pandaJob.out
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc    987109 Jun  5 07:15 agis_schedconf.cvmfs.json
[2025-06-05 11:39:48] drwx------. 4 boinc boinc      4096 Jun  5 07:15 pilot3
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc 172356683 Jun  5 10:53 HITS.45006595._056919.pool.root.1
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc       531 Jun  5 10:54 boinc_task_state.xml
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc      1014 Jun  5 10:54 memory_monitor_summary.json
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc   1598969 Jun  5 10:54 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc    378796 Jun  5 10:54 log.45006595._056919.job.log.tgz.1
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc        95 Jun  5 10:55 pilot_heartbeat.json
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc      7694 Jun  5 10:56 heartbeat.json
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc      4539 Jun  5 10:56 pilotlog.txt
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc   1128961 Jun  5 10:56 log.45006595._056919.job.log.1
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc       357 Jun  5 10:56 output.list
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc       620 Jun  5 10:56 runtime_log
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc   1525760 Jun  5 10:56 result.tar.gz
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc      8659 Jun  5 10:56 runtime_log.err
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc       657 Jun  5 10:56 AKmMDmZ49g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmr2nKDm736CDn.diag
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc      8192 Jun  5 11:39 boinc_mmap_file
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc        28 Jun  5 11:39 wrapper_checkpoint.txt
[2025-06-05 11:39:48] -rw-r--r--. 1 boinc boinc     20492 Jun  5 11:39 stderr.txt
[2025-06-05 11:39:48] HITS file was successfully produced:
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc 172356683 Jun  5 10:53 shared/HITS.pool.root.1
[2025-06-05 11:39:48]  *** Contents of shared directory: ***
[2025-06-05 11:39:48] total 380404
[2025-06-05 11:39:48] -rw-r--r--. 2 boinc boinc 215114660 Jun  5 06:49 ATLAS.root_0
[2025-06-05 11:39:48] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:49 start_atlas.sh
[2025-06-05 11:39:48] -rw-r--r--. 2 boinc boinc    508890 Jun  5 06:49 input.tar.gz
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc 172356683 Jun  5 10:53 HITS.pool.root.1
[2025-06-05 11:39:48] -rw-------. 1 boinc boinc   1525760 Jun  5 10:56 result.tar.gz
11:39:50 (11608): run_atlas exited; CPU time 46982.088377
11:39:50 (11608): called boinc_finish(0)

</stderr_txt>
]]>

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