Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:36:47 (93883): wrapper (7.7.26015): starting
16:36:47 (93883): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 16:36:47] Arguments: --nthreads 8
[2025-06-04 16:36:47] Threads: 8
[2025-06-04 16:36:47] Checking for CVMFS
[2025-06-04 16:36:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:36:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:36:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:36:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:36:48] 2.11.2.0 96941 13164 309824 146793 0 145 17650198 18432001 15220 130560 0 71940621 99.585 55184555 45258 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 16:36:48] CVMFS is ok
[2025-06-04 16:36:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:36:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:36:48] Further information can be found at the LHC@home message board.
[2025-06-04 16:36:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:36:48] Checking for apptainer binary...
[2025-06-04 16:36:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:36:48] Running /usr/bin/apptainer --version
[2025-06-04 16:36:48] apptainer version 1.3.2-1.el7
[2025-06-04 16:36:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:36:49] c-212-6.aglt2.org
[2025-06-04 16:36:49] apptainer works
[2025-06-04 16:36:49] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:36:49] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:36:49] Starting ATLAS job with PandaID=6667885816
[2025-06-04 16:36:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 19:38:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 19:38:02] 2025-06-04 23:37:48,892 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6667885816/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 19:38:02] 2025-06-04 23:37:48,893 | INFO     | extracted standard info from prmon json
[2025-06-04 19:38:02] 2025-06-04 23:37:48,893 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 19:38:02] 2025-06-04 23:37:48,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 19:38:02] 2025-06-04 23:37:48,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 19:38:02] 2025-06-04 23:37:48,894 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 19:38:02] 2025-06-04 23:37:48,897 | INFO     | fitting pss+swap vs Time
[2025-06-04 19:38:02] 2025-06-04 23:37:48,897 | INFO     | sum of square deviations: 1719427130.9943547
[2025-06-04 19:38:02] 2025-06-04 23:37:48,898 | INFO     | sum of deviations: 6636304225.152544
[2025-06-04 19:38:02] 2025-06-04 23:37:48,898 | INFO     | mean x: 1749074816.0056498
[2025-06-04 19:38:02] 2025-06-04 23:37:48,898 | INFO     | mean y: 2468641.8474576273
[2025-06-04 19:38:02] 2025-06-04 23:37:48,898 | INFO     | -- intersect: -6748263844.764859
[2025-06-04 19:38:02] 2025-06-04 23:37:48,898 | INFO     | intersect: -6748263844.764859
[2025-06-04 19:38:02] 2025-06-04 23:37:48,899 | INFO     | chi2: 2.2831356865505334
[2025-06-04 19:38:02] 2025-06-04 23:37:48,899 | INFO     | sum of square deviations: 1577787570.9941938
[2025-06-04 19:38:02] 2025-06-04 23:37:48,900 | INFO     | sum of deviations: 18636044928.6221
[2025-06-04 19:38:02] 2025-06-04 23:37:48,900 | INFO     | mean x: 1749074663.5058138
[2025-06-04 19:38:02] 2025-06-04 23:37:48,900 | INFO     | mean y: 2481255.8779069767
[2025-06-04 19:38:02] 2025-06-04 23:37:48,900 | INFO     | -- intersect: -20656721929.548176
[2025-06-04 19:38:02] 2025-06-04 23:37:48,900 | INFO     | intersect: -20656721929.548176
[2025-06-04 19:38:02] 2025-06-04 23:37:48,900 | INFO     | chi2: 1.4104718620059697
[2025-06-04 19:38:02] 2025-06-04 23:37:48,900 | INFO     | current chi2=1.4104718620059697 (change=38.2221621643094 %)
[2025-06-04 19:38:02] 2025-06-04 23:37:48,901 | INFO     | sum of square deviations: 1444148160.9940135
[2025-06-04 19:38:02] 2025-06-04 23:37:48,901 | INFO     | sum of deviations: 18028982496.946106
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | mean x: 1749074511.0059881
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | mean y: 2480563.0538922157
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | -- intersect: -21833252498.487736
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | intersect: -21833252498.487736
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | chi2: 1.411688115462881
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | current chi2=1.411688115462881 (change=-0.08623025312831054 %)
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | right removable region: 166
[2025-06-04 19:38:02] 2025-06-04 23:37:48,902 | INFO     | sum of square deviations: 1577786960.9941938
[2025-06-04 19:38:02] 2025-06-04 23:37:48,903 | INFO     | sum of deviations: -19556864683.52325
[2025-06-04 19:38:02] 2025-06-04 23:37:48,903 | INFO     | mean x: 1749074968.5058138
[2025-06-04 19:38:02] 2025-06-04 23:37:48,903 | INFO     | mean y: 2496495.523255814
[2025-06-04 19:38:02] 2025-06-04 23:37:48,903 | INFO     | -- intersect: 21682497234.56585
[2025-06-04 19:38:02] 2025-06-04 23:37:48,904 | INFO     | intersect: 21682497234.56585
[2025-06-04 19:38:02] 2025-06-04 23:37:48,904 | INFO     | chi2: 0.9148201445836601
[2025-06-04 19:38:02] 2025-06-04 23:37:48,904 | INFO     | current chi2=0.9148201445836601 (change=59.931415816735246 %)
[2025-06-04 19:38:02] 2025-06-04 23:37:48,904 | INFO     | sum of square deviations: 1444146940.9940135
[2025-06-04 19:38:02] 2025-06-04 23:37:48,905 | INFO     | sum of deviations: -18696947117.79641
[2025-06-04 19:38:02] 2025-06-04 23:37:48,905 | INFO     | mean x: 1749075121.0059881
[2025-06-04 19:38:02] 2025-06-04 23:37:48,905 | INFO     | mean y: 2495502.7964071855
[2025-06-04 19:38:02] 2025-06-04 23:37:48,905 | INFO     | -- intersect: 22647258382.668667
[2025-06-04 19:38:02] 2025-06-04 23:37:48,905 | INFO     | intersect: 22647258382.668667
[2025-06-04 19:38:02] 2025-06-04 23:37:48,905 | INFO     | chi2: 0.9149257414715426
[2025-06-04 19:38:02] 2025-06-04 23:37:48,906 | INFO     | current chi2=0.9149257414715426 (change=-0.0115429123973361 %)
[2025-06-04 19:38:02] 2025-06-04 23:37:48,906 | INFO     | left removable region: 20
[2025-06-04 19:38:02] 2025-06-04 23:37:48,906 | INFO     | sum of square deviations: 964973366.4931524
[2025-06-04 19:38:02] 2025-06-04 23:37:48,906 | INFO     | sum of deviations: -3642300656.2876716
[2025-06-04 19:38:02] 2025-06-04 23:37:48,907 | INFO     | mean x: 1749075090.5068493
[2025-06-04 19:38:02] 2025-06-04 23:37:48,907 | INFO     | mean y: 2505782.787671233
[2025-06-04 19:38:02] 2025-06-04 23:37:48,907 | INFO     | -- intersect: 6604405453.035952
[2025-06-04 19:38:02] 2025-06-04 23:37:48,907 | INFO     | intersect: 6604405453.035952
[2025-06-04 19:38:02] 2025-06-04 23:37:48,907 | INFO     | chi2: 0.011433560472963553
[2025-06-04 19:38:02] 2025-06-04 23:37:48,907 | INFO     | -- intersect: 6604405453.035952
[2025-06-04 19:38:02] 2025-06-04 23:37:48,907 | INFO     | current memory leak: -3.77 B/s (using 146 data points, chi2=0.01)
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | ..............................
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . Timing measurements:
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . get job = 0 s
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . initial setup = 2 s
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . payload setup = 7 s
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . stage-in = 0 s
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . payload execution = 10771 s
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . stage-out = 4 s
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | . log creation = 0 s
[2025-06-04 19:38:02] 2025-06-04 23:37:48,908 | INFO     | ..............................
[2025-06-04 19:38:02] 2025-06-04 23:37:49,012 | INFO     | 
[2025-06-04 19:38:02] 2025-06-04 23:37:49,012 | INFO     | job summary report
[2025-06-04 19:38:02] 2025-06-04 23:37:49,012 | INFO     | --------------------------------------------------
[2025-06-04 19:38:02] 2025-06-04 23:37:49,012 | INFO     | PanDA job id: 6667885816
[2025-06-04 19:38:02] 2025-06-04 23:37:49,012 | INFO     | task id: 44871837
[2025-06-04 19:38:02] 2025-06-04 23:37:49,012 | INFO     | errors: (none)
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | pilot state: finished 
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | transexitcode: 0
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | exeerrorcode: 0
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | exeerrordiag: 
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | exitcode: 0
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | exitmsg: OK
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | cpuconsumptiontime: 44065 s
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | nevents: 400
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | neventsw: 0
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | pid: 19642
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | pgrp: 19642
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | corecount: 8
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | event service: False
[2025-06-04 19:38:02] 2025-06-04 23:37:49,013 | INFO     | sizes: {0: 2397165, 1: 2397420, 5: 2397626, 12: 2397682, 10783: 2426502, 10788: 2435443, 10790: 2435627, 10834: 2435797}
[2025-06-04 19:38:02] 2025-06-04 23:37:49,014 | INFO     | --------------------------------------------------
[2025-06-04 19:38:02] 2025-06-04 23:37:49,014 | INFO     | 
[2025-06-04 19:38:02] 2025-06-04 23:37:49,014 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 19:38:02] 2025-06-04 23:37:49,297 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,299 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 19:38:02] 2025-06-04 23:37:49,299 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,299 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 19:38:02] 2025-06-04 23:37:49,299 | INFO     | job 6667885816 has completed (purged errors)
[2025-06-04 19:38:02] 2025-06-04 23:37:49,299 | INFO     | overall cleanup function is called
[2025-06-04 19:38:02] 2025-06-04 23:37:50,323 | INFO     | --- collectZombieJob: --- 10, [19642]
[2025-06-04 19:38:02] 2025-06-04 23:37:50,323 | INFO     | zombie collector waiting for pid 19642
[2025-06-04 19:38:02] 2025-06-04 23:37:50,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 19:38:02] 2025-06-04 23:37:50,323 | INFO     | collected zombie processes
[2025-06-04 19:38:02] 2025-06-04 23:37:50,323 | INFO     | will attempt to kill all subprocesses of pid=19642
[2025-06-04 19:38:02] 2025-06-04 23:37:51,015 | INFO     | process IDs to be killed: [19642] (in reverse order)
[2025-06-04 19:38:02] 2025-06-04 23:37:51,119 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 19:38:02] 2025-06-04 23:37:51,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 19:38:02] 2025-06-04 23:37:51,136 | INFO     | did not find any defunct processes belonging to 19642
[2025-06-04 19:38:02] 2025-06-04 23:37:51,159 | INFO     | did not find any defunct processes belonging to 19642
[2025-06-04 19:38:02] 2025-06-04 23:37:51,160 | INFO     | ready for new job
[2025-06-04 19:38:02] 2025-06-04 23:37:51,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 19:38:02] 2025-06-04 23:37:51,161 | INFO     | **************************************
[2025-06-04 19:38:02] 2025-06-04 23:37:51,162 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 19:38:02] 2025-06-04 23:37:51,162 | INFO     | **************************************
[2025-06-04 19:38:02] 2025-06-04 23:37:51,162 | INFO     | 
[2025-06-04 19:38:02] 2025-06-04 23:37:51,171 | INFO     | architecture information:
[2025-06-04 19:38:02] 2025-06-04 23:37:51,173 | INFO     | executing command: cat /etc/os-release
[2025-06-04 19:38:02] 2025-06-04 23:37:51,236 | INFO     | cat /etc/os-release:
[2025-06-04 19:38:02] NAME="CentOS Linux"
[2025-06-04 19:38:02] VERSION="7 (Core)"
[2025-06-04 19:38:02] ID="centos"
[2025-06-04 19:38:02] ID_LIKE="rhel fedora"
[2025-06-04 19:38:02] VERSION_ID="7"
[2025-06-04 19:38:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 19:38:02] ANSI_COLOR="0;31"
[2025-06-04 19:38:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 19:38:02] HOME_URL="https://www.centos.org/"
[2025-06-04 19:38:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 19:38:02] 
[2025-06-04 19:38:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 19:38:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 19:38:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 19:38:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 19:38:02] 
[2025-06-04 19:38:02] 2025-06-04 23:37:51,236 | INFO     | **************************************
[2025-06-04 19:38:02] 2025-06-04 23:37:51,739 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 19:38:02] 2025-06-04 23:37:51,758 | INFO     | sufficient remaining disk space (104809365504 B)
[2025-06-04 19:38:02] 2025-06-04 23:37:51,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 19:38:02] 2025-06-04 23:37:51,758 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 19:38:02] 2025-06-04 23:37:51,758 | INFO     | update_server=False
[2025-06-04 19:38:02] 2025-06-04 23:37:51,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 19:38:02] 2025-06-04 23:37:51,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 19:38:02] 2025-06-04 23:37:51,758 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 19:38:02] 2025-06-04 23:37:51,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:38:02] 2025-06-04 23:37:51,759 | INFO     | aborting loop
[2025-06-04 19:38:02] 2025-06-04 23:37:51,759 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 19:38:02] 2025-06-04 23:37:51,759 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 19:38:02] 2025-06-04 23:37:51,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 19:38:02] 2025-06-04 23:37:51,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 19:38:02] 2025-06-04 23:37:52,264 | INFO     | all job control threads have been joined
[2025-06-04 19:38:02] 2025-06-04 23:37:52,442 | INFO     | all data control threads have been joined
[2025-06-04 19:38:02] 2025-06-04 23:37:52,764 | INFO     | [job] retrieve thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:52,767 | INFO     | [job] job monitor thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:52,846 | INFO     | all payload control threads have been joined
[2025-06-04 19:38:02] 2025-06-04 23:37:52,942 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,270 | INFO     | [job] control thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,333 | INFO     | [payload] failed_post thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,341 | INFO     | [job] validate thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,341 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,441 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,448 | INFO     | [data] control thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,765 | INFO     | [data] copytool_out thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,824 | INFO     | [payload] validate_post thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,841 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,846 | INFO     | [data] copytool_in thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:53,852 | INFO     | [payload] control thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:54,037 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:38:02] 2025-06-04 23:37:55,042 | INFO     | [job] queue monitor thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:55,767 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 19:38:02] 2025-06-04 23:37:55,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845113210688)>', '<ExcThread(monitor, started 139844886320896)>']
[2025-06-04 19:38:02] 2025-06-04 23:37:56,791 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 19:38:02] 2025-06-04 23:37:56,791 | INFO     | [monitor] control thread has ended
[2025-06-04 19:38:02] 2025-06-04 23:38:00,825 | INFO     | all workflow threads have been joined
[2025-06-04 19:38:02] 2025-06-04 23:38:00,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 19:38:02] 2025-06-04 23:38:00,825 | INFO     | traces error code: 0
[2025-06-04 19:38:02] 2025-06-04 23:38:00,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 19:38:02] 2025-06-04 23:38:01,005 [wrapper] ==== pilot stdout END ====
[2025-06-04 19:38:02] 2025-06-04 23:38:01,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 19:38:02] 2025-06-04 23:38:01,088 [wrapper] pilotpid: 97948
[2025-06-04 19:38:02] 2025-06-04 23:38:01,090 [wrapper] Pilot exit status: 0
[2025-06-04 19:38:02] 2025-06-04 23:38:01,306 [wrapper] pandaids: 6667885816
[2025-06-04 19:38:02] 2025-06-04 23:38:01,768 [wrapper] cleanup supervisor_pilot 19475 97949
[2025-06-04 19:38:02] 2025-06-04 23:38:01,810 [wrapper] Test setup, not cleaning
[2025-06-04 19:38:02] 2025-06-04 23:38:01,854 [wrapper] apfmon messages muted
[2025-06-04 19:38:02] 2025-06-04 23:38:01,894 [wrapper] ==== wrapper stdout END ====
[2025-06-04 19:38:02] 2025-06-04 23:38:01,938 [wrapper] ==== wrapper stderr END ====
[2025-06-04 19:38:02]  *** Error codes and diagnostics ***
[2025-06-04 19:38:02]     "exeErrorCode": 0,
[2025-06-04 19:38:02]     "exeErrorDiag": "",
[2025-06-04 19:38:02]     "pilotErrorCode": 0,
[2025-06-04 19:38:02]     "pilotErrorDiag": "",
[2025-06-04 19:38:02]  *** Listing of results directory ***
[2025-06-04 19:38:02] total 417884
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas    495897 May 27 22:39 pilot3.tar.gz
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas      5111 May 27 22:45 queuedata.json
[2025-06-04 19:38:02] -rwx------ 1 boincer umatlas     37140 May 27 22:46 runpilot2-wrapper.sh
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas       100 Jun  4 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 19:38:02] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 16:36 run_atlas
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas       105 Jun  4 16:36 job.xml
[2025-06-04 19:38:02] -rw-r--r-- 2 boincer umatlas 224231788 Jun  4 16:36 EVNT.44871834._003034.pool.root.1
[2025-06-04 19:38:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 16:36 start_atlas.sh
[2025-06-04 19:38:02] drwxrwx--x 2 boincer umatlas      4096 Jun  4 16:36 shared
[2025-06-04 19:38:02] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 16:36 input.tar.gz
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas         0 Jun  4 16:36 boinc_lockfile
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 16:36 pandaJob.out
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas    987032 Jun  4 16:36 agis_schedconf.cvmfs.json
[2025-06-04 19:38:02] drwx------ 4 boincer umatlas      4096 Jun  4 16:36 pilot3
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas      6302 Jun  4 19:31 init_data.xml
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas 197141667 Jun  4 19:36 HITS.44871837._077551.pool.root.1
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas       531 Jun  4 19:36 boinc_task_state.xml
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas      1085 Jun  4 19:36 memory_monitor_summary.json
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas   1598969 Jun  4 19:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas    373081 Jun  4 19:37 log.44871837._077551.job.log.tgz.1
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas        95 Jun  4 19:37 pilot_heartbeat.json
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas      7756 Jun  4 19:37 heartbeat.json
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas        28 Jun  4 19:37 wrapper_checkpoint.txt
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas      4477 Jun  4 19:38 pilotlog.txt
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas    975846 Jun  4 19:38 log.44871837._077551.job.log.1
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 19:38 boinc_mmap_file
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas       357 Jun  4 19:38 output.list
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas       620 Jun  4 19:38 runtime_log
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas   1372160 Jun  4 19:38 result.tar.gz
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas      8655 Jun  4 19:38 runtime_log.err
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas       662 Jun  4 19:38 Ir3LDmnzLe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmo3aKDmz0dlPn.diag
[2025-06-04 19:38:02] -rw-r--r-- 1 boincer umatlas     20930 Jun  4 19:38 stderr.txt
[2025-06-04 19:38:02] HITS file was successfully produced:
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas 197141667 Jun  4 19:36 shared/HITS.pool.root.1
[2025-06-04 19:38:02]  *** Contents of shared directory: ***
[2025-06-04 19:38:02] total 413368
[2025-06-04 19:38:02] -rw-r--r-- 2 boincer umatlas 224231788 Jun  4 16:36 ATLAS.root_0
[2025-06-04 19:38:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 16:36 start_atlas.sh
[2025-06-04 19:38:02] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 16:36 input.tar.gz
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas 197141667 Jun  4 19:36 HITS.pool.root.1
[2025-06-04 19:38:02] -rw------- 1 boincer umatlas   1372160 Jun  4 19:38 result.tar.gz
19:38:04 (93883): run_atlas exited; CPU time 43608.483728
19:38:04 (93883): called boinc_finish(0)

</stderr_txt>
]]>

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