Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:05:16 (2775074): wrapper (7.7.26015): starting
16:05:16 (2775074): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 16:05:16] Arguments: --nthreads 8
[2025-06-04 16:05:16] Threads: 8
[2025-06-04 16:05:16] Checking for CVMFS
[2025-06-04 16:05:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:05:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:05:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:05:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:05:16] 2.12.6.0 47114 1275 218580 146792 2 778 18742960 32935937 25464 16776704 0 10329343 99.586 10654962 28786 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 16:05:16] CVMFS is ok
[2025-06-04 16:05:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:05:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:05:16] Further information can be found at the LHC@home message board.
[2025-06-04 16:05:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:05:16] Checking for apptainer binary...
[2025-06-04 16:05:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:05:16] Running /usr/bin/apptainer --version
[2025-06-04 16:05:16] apptainer version 1.4.1-1.el9
[2025-06-04 16:05:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:05:17] c7-2-15.aglt2.org
[2025-06-04 16:05:17] apptainer works
[2025-06-04 16:05:17] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:05:17] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:05:17] Starting ATLAS job with PandaID=6668327125
[2025-06-04 16:05:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:54:41]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:54:41] 2025-06-04 22:54:22,183 | INFO     | executing command: lscpu
[2025-06-04 18:54:41] 2025-06-04 22:54:22,274 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 18:54:41] 2025-06-04 22:54:24,138 | INFO     | monitor loop #657: job 0:6668327125 is in state 'finished'
[2025-06-04 18:54:41] 2025-06-04 22:54:24,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,616 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 18:54:41] 2025-06-04 22:54:26,617 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668327125/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,617 | INFO     | extracted standard info from prmon json
[2025-06-04 18:54:41] 2025-06-04 22:54:26,617 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:54:41] 2025-06-04 22:54:26,617 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:54:41] 2025-06-04 22:54:26,618 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:54:41] 2025-06-04 22:54:26,618 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:54:41] 2025-06-04 22:54:26,620 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:54:41] 2025-06-04 22:54:26,621 | INFO     | sum of square deviations: 1392881930.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,621 | INFO     | sum of deviations: 29866356460.999996
[2025-06-04 18:54:41] 2025-06-04 22:54:26,621 | INFO     | mean x: 1749072603.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,622 | INFO     | mean y: 2114913.3515151516
[2025-06-04 18:54:41] 2025-06-04 22:54:26,622 | INFO     | -- intersect: -37501728529.69404
[2025-06-04 18:54:41] 2025-06-04 22:54:26,622 | INFO     | intersect: -37501728529.69404
[2025-06-04 18:54:41] 2025-06-04 22:54:26,622 | INFO     | chi2: 1.5899300286214686
[2025-06-04 18:54:41] 2025-06-04 22:54:26,622 | INFO     | sum of square deviations: 1270051720.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,623 | INFO     | sum of deviations: 28936069068.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,623 | INFO     | mean x: 1749072450.5
[2025-06-04 18:54:41] 2025-06-04 22:54:26,623 | INFO     | mean y: 2113748.325
[2025-06-04 18:54:41] 2025-06-04 22:54:26,623 | INFO     | -- intersect: -39847665938.288086
[2025-06-04 18:54:41] 2025-06-04 22:54:26,623 | INFO     | intersect: -39847665938.288086
[2025-06-04 18:54:41] 2025-06-04 22:54:26,624 | INFO     | chi2: 1.588375678822021
[2025-06-04 18:54:41] 2025-06-04 22:54:26,624 | INFO     | current chi2=1.588375678822021 (change=0.09776215125613844 %)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,624 | INFO     | right removable region: 159
[2025-06-04 18:54:41] 2025-06-04 22:54:26,624 | INFO     | sum of square deviations: 1270051720.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,625 | INFO     | sum of deviations: 7649825170.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,625 | INFO     | mean x: 1749072755.5
[2025-06-04 18:54:41] 2025-06-04 22:54:26,625 | INFO     | mean y: 2142121.5375
[2025-06-04 18:54:41] 2025-06-04 22:54:26,625 | INFO     | -- intersect: -10532941275.841904
[2025-06-04 18:54:41] 2025-06-04 22:54:26,625 | INFO     | intersect: -10532941275.841904
[2025-06-04 18:54:41] 2025-06-04 22:54:26,625 | INFO     | chi2: 0.10042421394718731
[2025-06-04 18:54:41] 2025-06-04 22:54:26,626 | INFO     | current chi2=0.10042421394718731 (change=93.68373374051818 %)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,626 | INFO     | sum of square deviations: 1154663510.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,626 | INFO     | sum of deviations: 8657399197.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | mean x: 1749072908.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | mean y: 2140812.3677419354
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | -- intersect: -13112002189.530409
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | intersect: -13112002189.530409
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | chi2: 0.08106634560928867
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | current chi2=0.08106634560928867 (change=19.276096448291707 %)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | left removable region: 20
[2025-06-04 18:54:41] 2025-06-04 22:54:26,627 | INFO     | sum of square deviations: 832722590.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,628 | INFO     | sum of deviations: 4430381993.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,628 | INFO     | mean x: 1749073030.0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,628 | INFO     | mean y: 2145626.6978417267
[2025-06-04 18:54:41] 2025-06-04 22:54:26,629 | INFO     | -- intersect: -9303548429.895422
[2025-06-04 18:54:41] 2025-06-04 22:54:26,629 | INFO     | intersect: -9303548429.895422
[2025-06-04 18:54:41] 2025-06-04 22:54:26,629 | INFO     | chi2: 0.06828408155595901
[2025-06-04 18:54:41] 2025-06-04 22:54:26,629 | INFO     | -- intersect: -9303548429.895422
[2025-06-04 18:54:41] 2025-06-04 22:54:26,629 | INFO     | current memory leak: 5.32 B/s (using 139 data points, chi2=0.07)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | ..............................
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . Timing measurements:
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . get job = 0 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . initial setup = 3 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . payload setup = 16 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . stage-in = 0 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . payload execution = 10062 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . stage-out = 0 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | . log creation = 0 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,630 | INFO     | ..............................
[2025-06-04 18:54:41] 2025-06-04 22:54:26,707 | INFO     | 
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | job summary report
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | --------------------------------------------------
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | PanDA job id: 6668327125
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | task id: 44871837
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | errors: (none)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | pilot state: finished 
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | transexitcode: 0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | exeerrorcode: 0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | exeerrordiag: 
[2025-06-04 18:54:41] 2025-06-04 22:54:26,708 | INFO     | exitcode: 0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | exitmsg: OK
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | cpuconsumptiontime: 40307 s
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | nevents: 400
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | neventsw: 0
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | pid: 2799889
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | pgrp: 2799889
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | corecount: 8
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | event service: False
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | sizes: {0: 2396513, 1: 2397369, 12: 2397603, 22: 2397603, 10083: 2426061, 10085: 2435002, 10087: 2435186, 10094: 2435356}
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | --------------------------------------------------
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | 
[2025-06-04 18:54:41] 2025-06-04 22:54:26,709 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 18:54:41] 2025-06-04 22:54:26,729 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,731 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,731 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,731 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:54:41] 2025-06-04 22:54:26,731 | INFO     | job 6668327125 has completed (purged errors)
[2025-06-04 18:54:41] 2025-06-04 22:54:26,731 | INFO     | overall cleanup function is called
[2025-06-04 18:54:41] 2025-06-04 22:54:27,738 | INFO     | --- collectZombieJob: --- 10, [2799889]
[2025-06-04 18:54:41] 2025-06-04 22:54:27,739 | INFO     | zombie collector waiting for pid 2799889
[2025-06-04 18:54:41] 2025-06-04 22:54:27,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:54:41] 2025-06-04 22:54:27,739 | INFO     | collected zombie processes
[2025-06-04 18:54:41] 2025-06-04 22:54:27,739 | INFO     | will attempt to kill all subprocesses of pid=2799889
[2025-06-04 18:54:41] 2025-06-04 22:54:28,107 | INFO     | process IDs to be killed: [2799889] (in reverse order)
[2025-06-04 18:54:41] 2025-06-04 22:54:28,241 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:54:41] 2025-06-04 22:54:28,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:54:41] 2025-06-04 22:54:28,260 | INFO     | did not find any defunct processes belonging to 2799889
[2025-06-04 18:54:41] 2025-06-04 22:54:28,279 | INFO     | did not find any defunct processes belonging to 2799889
[2025-06-04 18:54:41] 2025-06-04 22:54:28,279 | INFO     | ready for new job
[2025-06-04 18:54:41] 2025-06-04 22:54:28,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:54:41] 2025-06-04 22:54:28,280 | INFO     | **************************************
[2025-06-04 18:54:41] 2025-06-04 22:54:28,281 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:54:41] 2025-06-04 22:54:28,281 | INFO     | **************************************
[2025-06-04 18:54:41] 2025-06-04 22:54:28,281 | INFO     | 
[2025-06-04 18:54:41] 2025-06-04 22:54:28,298 | INFO     | architecture information:
[2025-06-04 18:54:41] 2025-06-04 22:54:28,298 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:54:41] 2025-06-04 22:54:28,314 | INFO     | cat /etc/os-release:
[2025-06-04 18:54:41] NAME="CentOS Linux"
[2025-06-04 18:54:41] VERSION="7 (Core)"
[2025-06-04 18:54:41] ID="centos"
[2025-06-04 18:54:41] ID_LIKE="rhel fedora"
[2025-06-04 18:54:41] VERSION_ID="7"
[2025-06-04 18:54:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:54:41] ANSI_COLOR="0;31"
[2025-06-04 18:54:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:54:41] HOME_URL="https://www.centos.org/"
[2025-06-04 18:54:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:54:41] 
[2025-06-04 18:54:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:54:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:54:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:54:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:54:41] 
[2025-06-04 18:54:41] 2025-06-04 22:54:28,314 | INFO     | **************************************
[2025-06-04 18:54:41] 2025-06-04 22:54:28,818 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 18:54:41] 2025-06-04 22:54:28,850 | INFO     | sufficient remaining disk space (75324456960 B)
[2025-06-04 18:54:41] 2025-06-04 22:54:28,850 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:54:41] 2025-06-04 22:54:28,850 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:54:41] 2025-06-04 22:54:28,850 | INFO     | update_server=False
[2025-06-04 18:54:41] 2025-06-04 22:54:28,850 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:54:41] 2025-06-04 22:54:28,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:54:41] 2025-06-04 22:54:28,921 | INFO     | all data control threads have been joined
[2025-06-04 18:54:41] 2025-06-04 22:54:29,151 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 18:54:41] 2025-06-04 22:54:29,151 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 18:54:41] 2025-06-04 22:54:29,152 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:54:41] 2025-06-04 22:54:29,152 | INFO     | will abort loop
[2025-06-04 18:54:41] 2025-06-04 22:54:29,675 | INFO     | all payload control threads have been joined
[2025-06-04 18:54:41] 2025-06-04 22:54:29,817 | INFO     | PID=2782964 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 18:54:41] 2025-06-04 22:54:29,817 | INFO     | .. there are 28 such processes running
[2025-06-04 18:54:41] 2025-06-04 22:54:29,817 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:54:41] 2025-06-04 22:54:29,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:54:41] 2025-06-04 22:54:29,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:54:41] 2025-06-04 22:54:29,855 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:29,927 | INFO     | [data] control thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,120 | INFO     | all job control threads have been joined
[2025-06-04 18:54:41] 2025-06-04 22:54:30,146 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,148 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,157 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,521 | INFO     | [job] validate thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,682 | INFO     | [payload] control thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,844 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,856 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:30,911 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:31,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:54:41] 2025-06-04 22:54:31,129 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:31,135 | INFO     | [job] control thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:31,136 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:31,213 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:31,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:54:41] 2025-06-04 22:54:32,726 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:35,028 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:54:41] 2025-06-04 22:54:36,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139825147750208)>', '<ExcThread(monitor, started 139824665192192)>']
[2025-06-04 18:54:41] 2025-06-04 22:54:36,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:54:41] 2025-06-04 22:54:36,855 | INFO     | [monitor] control thread has ended
[2025-06-04 18:54:41] 2025-06-04 22:54:41,274 | INFO     | all workflow threads have been joined
[2025-06-04 18:54:41] 2025-06-04 22:54:41,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:54:41] 2025-06-04 22:54:41,274 | INFO     | traces error code: 0
[2025-06-04 18:54:41] 2025-06-04 22:54:41,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:54:41] 2025-06-04 22:54:41,401 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:54:41] 2025-06-04 22:54:41,404 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:54:41] 2025-06-04 22:54:41,407 [wrapper] pilotpid: 2782964
[2025-06-04 18:54:41] 2025-06-04 22:54:41,409 [wrapper] Pilot exit status: 0
[2025-06-04 18:54:41] 2025-06-04 22:54:41,420 [wrapper] pandaids: 6668327125
[2025-06-04 18:54:41] 2025-06-04 22:54:41,501 [wrapper] cleanup supervisor_pilot 3592349 2782965
[2025-06-04 18:54:41] 2025-06-04 22:54:41,504 [wrapper] Test setup, not cleaning
[2025-06-04 18:54:41] 2025-06-04 22:54:41,507 [wrapper] apfmon messages muted
[2025-06-04 18:54:41] 2025-06-04 22:54:41,509 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:54:41] 2025-06-04 22:54:41,512 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:54:41]  *** Error codes and diagnostics ***
[2025-06-04 18:54:41]     "exeErrorCode": 0,
[2025-06-04 18:54:41]     "exeErrorDiag": "",
[2025-06-04 18:54:41]     "pilotErrorCode": 0,
[2025-06-04 18:54:41]     "pilotErrorDiag": "",
[2025-06-04 18:54:41]  *** Listing of results directory ***
[2025-06-04 18:54:41] total 412596
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas    495897 May 28 06:43 pilot3.tar.gz
[2025-06-04 18:54:41] -rwx------. 1 boincer umatlas     37140 May 28 06:53 runpilot2-wrapper.sh
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas      5111 May 28 06:53 queuedata.json
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas       100 Jun  4 16:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:54:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 16:05 run_atlas
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas       105 Jun  4 16:05 job.xml
[2025-06-04 18:54:41] -rw-r--r--. 2 boincer umatlas 222868551 Jun  4 16:05 EVNT.44871834._003248.pool.root.1
[2025-06-04 18:54:41] -rw-r--r--. 2 boincer umatlas    508876 Jun  4 16:05 input.tar.gz
[2025-06-04 18:54:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 16:05 start_atlas.sh
[2025-06-04 18:54:41] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 16:05 shared
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas         0 Jun  4 16:05 boinc_lockfile
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas      2558 Jun  4 16:05 pandaJob.out
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas    991007 Jun  4 16:05 agis_schedconf.cvmfs.json
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas   1598969 Jun  4 16:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:54:41] drwx------. 4 boincer umatlas      4096 Jun  4 16:05 pilot3
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas      6929 Jun  4 18:45 init_data.xml
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas        95 Jun  4 18:53 pilot_heartbeat.json
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas 193333191 Jun  4 18:53 HITS.44871837._083214.pool.root.1
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas       530 Jun  4 18:53 boinc_task_state.xml
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas      1041 Jun  4 18:54 memory_monitor_summary.json
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas    356950 Jun  4 18:54 log.44871837._083214.job.log.tgz.1
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas      7706 Jun  4 18:54 heartbeat.json
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas        27 Jun  4 18:54 wrapper_checkpoint.txt
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 18:54 boinc_mmap_file
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas      4935 Jun  4 18:54 pilotlog.txt
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas    872958 Jun  4 18:54 log.44871837._083214.job.log.1
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas       357 Jun  4 18:54 output.list
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas       620 Jun  4 18:54 runtime_log
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas   1249280 Jun  4 18:54 result.tar.gz
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas      8655 Jun  4 18:54 runtime_log.err
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas       655 Jun  4 18:54 Hn5LDmFaTe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmdMTKDmtV9oem.diag
[2025-06-04 18:54:41] -rw-r--r--. 1 boincer umatlas     21180 Jun  4 18:54 stderr.txt
[2025-06-04 18:54:41] HITS file was successfully produced:
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas 193333191 Jun  4 18:53 shared/HITS.pool.root.1
[2025-06-04 18:54:41]  *** Contents of shared directory: ***
[2025-06-04 18:54:41] total 408192
[2025-06-04 18:54:41] -rw-r--r--. 2 boincer umatlas 222868551 Jun  4 16:05 ATLAS.root_0
[2025-06-04 18:54:41] -rw-r--r--. 2 boincer umatlas    508876 Jun  4 16:05 input.tar.gz
[2025-06-04 18:54:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 16:05 start_atlas.sh
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas 193333191 Jun  4 18:53 HITS.pool.root.1
[2025-06-04 18:54:41] -rw-------. 1 boincer umatlas   1249280 Jun  4 18:54 result.tar.gz
18:54:43 (2775074): run_atlas exited; CPU time 40647.237580
18:54:43 (2775074): called boinc_finish(0)

</stderr_txt>
]]>

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