Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:05:04 (2659998): wrapper (7.7.26015): starting
16:05:04 (2659998): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 16:05:04] Arguments: --nthreads 10
[2025-06-04 16:05:04] Threads: 10
[2025-06-04 16:05:04] Checking for CVMFS
[2025-06-04 16:05:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:05:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:05:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:05:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:05:05] 2.12.6.0 6643 1793 209056 146792 0 591 26614480 32935936 34116 16776704 0 13789767 99.680 8860290 22368 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 16:05:05] CVMFS is ok
[2025-06-04 16:05:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:05:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:05:05] Further information can be found at the LHC@home message board.
[2025-06-04 16:05:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:05:05] Checking for apptainer binary...
[2025-06-04 16:05:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:05:05] Running /usr/bin/apptainer --version
[2025-06-04 16:05:05] apptainer version 1.4.1-1.el9
[2025-06-04 16:05:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:05:05] c-3-40.aglt2.org
[2025-06-04 16:05:05] apptainer works
[2025-06-04 16:05:05] Set ATHENA_PROC_NUMBER=10
[2025-06-04 16:05:05] Set ATHENA_CORE_NUMBER=10
[2025-06-04 16:05:05] Starting ATLAS job with PandaID=6667435297
[2025-06-04 16:05:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:44:15]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:44:15] 2025-06-04 22:43:59,943 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 18:44:15] 2025-06-04 22:43:59,943 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6667435297/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:44:15] 2025-06-04 22:43:59,946 | INFO     | extracted standard info from prmon json
[2025-06-04 18:44:15] 2025-06-04 22:43:59,946 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:44:15] 2025-06-04 22:43:59,946 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:44:15] 2025-06-04 22:43:59,947 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:44:15] 2025-06-04 22:43:59,947 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:44:15] 2025-06-04 22:43:59,950 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:44:15] 2025-06-04 22:43:59,951 | INFO     | sum of square deviations: 1154685852.6709664
[2025-06-04 18:44:15] 2025-06-04 22:43:59,952 | INFO     | sum of deviations: 39113988810.987076
[2025-06-04 18:44:15] 2025-06-04 22:43:59,952 | INFO     | mean x: 1749072269.1225805
[2025-06-04 18:44:15] 2025-06-04 22:43:59,952 | INFO     | mean y: 2198026.6322580646
[2025-06-04 18:44:15] 2025-06-04 22:43:59,952 | INFO     | -- intersect: -59246118739.19468
[2025-06-04 18:44:15] 2025-06-04 22:43:59,952 | INFO     | intersect: -59246118739.19468
[2025-06-04 18:44:15] 2025-06-04 22:43:59,952 | INFO     | chi2: 1.7439732256030427
[2025-06-04 18:44:15] 2025-06-04 22:43:59,953 | INFO     | sum of square deviations: 1046503663.3399996
[2025-06-04 18:44:15] 2025-06-04 22:43:59,953 | INFO     | sum of deviations: 38156328011.479996
[2025-06-04 18:44:15] 2025-06-04 22:43:59,953 | INFO     | mean x: 1749072116.62
[2025-06-04 18:44:15] 2025-06-04 22:43:59,953 | INFO     | mean y: 2196661.973333333
[2025-06-04 18:44:15] 2025-06-04 22:43:59,953 | INFO     | -- intersect: -63770317219.618004
[2025-06-04 18:44:15] 2025-06-04 22:43:59,954 | INFO     | intersect: -63770317219.618004
[2025-06-04 18:44:15] 2025-06-04 22:43:59,954 | INFO     | chi2: 1.737434287902242
[2025-06-04 18:44:15] 2025-06-04 22:43:59,954 | INFO     | current chi2=1.737434287902242 (change=0.37494484461134087 %)
[2025-06-04 18:44:15] 2025-06-04 22:43:59,954 | INFO     | right removable region: 149
[2025-06-04 18:44:15] 2025-06-04 22:43:59,954 | INFO     | sum of square deviations: 1046501285.0933363
[2025-06-04 18:44:15] 2025-06-04 22:43:59,955 | INFO     | sum of deviations: 12936180059.919996
[2025-06-04 18:44:15] 2025-06-04 22:43:59,955 | INFO     | mean x: 1749072421.6266668
[2025-06-04 18:44:15] 2025-06-04 22:43:59,955 | INFO     | mean y: 2234587.32
[2025-06-04 18:44:15] 2025-06-04 22:43:59,955 | INFO     | -- intersect: -21618680844.221825
[2025-06-04 18:44:15] 2025-06-04 22:43:59,955 | INFO     | intersect: -21618680844.221825
[2025-06-04 18:44:15] 2025-06-04 22:43:59,955 | INFO     | chi2: 0.08319655867795649
[2025-06-04 18:44:15] 2025-06-04 22:43:59,955 | INFO     | current chi2=0.08319655867795649 (change=95.22948188329049 %)
[2025-06-04 18:44:15] 2025-06-04 22:43:59,956 | INFO     | sum of square deviations: 945293592.5103433
[2025-06-04 18:44:15] 2025-06-04 22:43:59,956 | INFO     | sum of deviations: 8441464513.91724
[2025-06-04 18:44:15] 2025-06-04 22:43:59,956 | INFO     | mean x: 1749072574.1310344
[2025-06-04 18:44:15] 2025-06-04 22:43:59,956 | INFO     | mean y: 2241333.951724138
[2025-06-04 18:44:15] 2025-06-04 22:43:59,956 | INFO     | -- intersect: -15616963306.570002
[2025-06-04 18:44:15] 2025-06-04 22:43:59,956 | INFO     | intersect: -15616963306.570002
[2025-06-04 18:44:15] 2025-06-04 22:43:59,957 | INFO     | chi2: 0.04592632277397236
[2025-06-04 18:44:15] 2025-06-04 22:43:59,957 | INFO     | current chi2=0.04592632277397236 (change=44.79780954432571 %)
[2025-06-04 18:44:15] 2025-06-04 22:43:59,957 | INFO     | sum of square deviations: 850839300.6857142
[2025-06-04 18:44:15] 2025-06-04 22:43:59,957 | INFO     | sum of deviations: 5813309678.714286
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | mean x: 1749072726.6285715
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | mean y: 2245578.5714285714
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | -- intersect: -11948191363.26997
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | intersect: -11948191363.26997
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | chi2: 0.036249977855073764
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | current chi2=0.036249977855073764 (change=21.06927864989537 %)
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | left removable region: 30
[2025-06-04 18:44:15] 2025-06-04 22:43:59,958 | INFO     | sum of square deviations: 522508079.8487386
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | sum of deviations: 2257667614.7479
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | mean x: 1749073001.1344538
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | mean y: 2253257.8907563025
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | -- intersect: -7555190584.19169
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | intersect: -7555190584.19169
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | chi2: 0.023746214439747636
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | -- intersect: -7555190584.19169
[2025-06-04 18:44:15] 2025-06-04 22:43:59,959 | INFO     | current memory leak: 4.32 B/s (using 119 data points, chi2=0.02)
[2025-06-04 18:44:15] 2025-06-04 22:43:59,960 | INFO     | ..............................
[2025-06-04 18:44:15] 2025-06-04 22:43:59,960 | INFO     | . Timing measurements:
[2025-06-04 18:44:15] 2025-06-04 22:43:59,960 | INFO     | . get job = 0 s
[2025-06-04 18:44:15] 2025-06-04 22:43:59,960 | INFO     | . initial setup = 3 s
[2025-06-04 18:44:15] 2025-06-04 22:43:59,960 | INFO     | . payload setup = 15 s
[2025-06-04 18:44:15] 2025-06-04 22:43:59,961 | INFO     | . stage-in = 0 s
[2025-06-04 18:44:15] 2025-06-04 22:43:59,961 | INFO     | . payload execution = 9461 s
[2025-06-04 18:44:15] 2025-06-04 22:43:59,961 | INFO     | . stage-out = 2 s
[2025-06-04 18:44:15] 2025-06-04 22:43:59,961 | INFO     | . log creation = 0 s
[2025-06-04 18:44:15] 2025-06-04 22:43:59,961 | INFO     | ..............................
[2025-06-04 18:44:15] 2025-06-04 22:44:00,107 | INFO     | 
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | job summary report
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | --------------------------------------------------
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | PanDA job id: 6667435297
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | task id: 44871837
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | errors: (none)
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | pilot state: finished 
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | transexitcode: 0
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | exeerrorcode: 0
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | exeerrordiag: 
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | exitcode: 0
[2025-06-04 18:44:15] 2025-06-04 22:44:00,108 | INFO     | exitmsg: OK
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | cpuconsumptiontime: 53039 s
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | nevents: 400
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | neventsw: 0
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | pid: 2688866
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | pgrp: 2688866
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | corecount: 10
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | event service: False
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | sizes: {0: 2397170, 1: 2397369, 11: 2397575, 12: 2397603, 9481: 2425860, 9484: 2434801, 9485: 2434985, 9495: 2435155}
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | --------------------------------------------------
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | 
[2025-06-04 18:44:15] 2025-06-04 22:44:00,109 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 18:44:15] 2025-06-04 22:44:00,208 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,208 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,208 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,208 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,209 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:44:15] 2025-06-04 22:44:00,210 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,210 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:44:15] 2025-06-04 22:44:00,210 | INFO     | job 6667435297 has completed (purged errors)
[2025-06-04 18:44:15] 2025-06-04 22:44:00,210 | INFO     | overall cleanup function is called
[2025-06-04 18:44:15] 2025-06-04 22:44:01,227 | INFO     | --- collectZombieJob: --- 10, [2688866]
[2025-06-04 18:44:15] 2025-06-04 22:44:01,228 | INFO     | zombie collector waiting for pid 2688866
[2025-06-04 18:44:15] 2025-06-04 22:44:01,228 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:44:15] 2025-06-04 22:44:01,228 | INFO     | collected zombie processes
[2025-06-04 18:44:15] 2025-06-04 22:44:01,228 | INFO     | will attempt to kill all subprocesses of pid=2688866
[2025-06-04 18:44:15] 2025-06-04 22:44:01,835 | INFO     | process IDs to be killed: [2688866] (in reverse order)
[2025-06-04 18:44:15] 2025-06-04 22:44:02,030 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:44:15] 2025-06-04 22:44:02,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:44:15] 2025-06-04 22:44:02,051 | INFO     | did not find any defunct processes belonging to 2688866
[2025-06-04 18:44:15] 2025-06-04 22:44:02,071 | INFO     | did not find any defunct processes belonging to 2688866
[2025-06-04 18:44:15] 2025-06-04 22:44:02,071 | INFO     | ready for new job
[2025-06-04 18:44:15] 2025-06-04 22:44:02,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:44:15] 2025-06-04 22:44:02,073 | INFO     | **************************************
[2025-06-04 18:44:15] 2025-06-04 22:44:02,074 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:44:15] 2025-06-04 22:44:02,074 | INFO     | **************************************
[2025-06-04 18:44:15] 2025-06-04 22:44:02,074 | INFO     | 
[2025-06-04 18:44:15] 2025-06-04 22:44:02,112 | INFO     | architecture information:
[2025-06-04 18:44:15] 2025-06-04 22:44:02,113 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:44:15] 2025-06-04 22:44:02,133 | INFO     | cat /etc/os-release:
[2025-06-04 18:44:15] NAME="CentOS Linux"
[2025-06-04 18:44:15] VERSION="7 (Core)"
[2025-06-04 18:44:15] ID="centos"
[2025-06-04 18:44:15] ID_LIKE="rhel fedora"
[2025-06-04 18:44:15] VERSION_ID="7"
[2025-06-04 18:44:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:44:15] ANSI_COLOR="0;31"
[2025-06-04 18:44:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:44:15] HOME_URL="https://www.centos.org/"
[2025-06-04 18:44:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:44:15] 
[2025-06-04 18:44:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:44:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:44:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:44:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:44:15] 
[2025-06-04 18:44:15] 2025-06-04 22:44:02,134 | INFO     | **************************************
[2025-06-04 18:44:15] 2025-06-04 22:44:02,639 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 18:44:15] 2025-06-04 22:44:02,692 | INFO     | sufficient remaining disk space (76013371392 B)
[2025-06-04 18:44:15] 2025-06-04 22:44:02,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:44:15] 2025-06-04 22:44:02,692 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:44:15] 2025-06-04 22:44:02,693 | INFO     | update_server=False
[2025-06-04 18:44:15] 2025-06-04 22:44:02,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:44:15] 2025-06-04 22:44:02,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:44:15] 2025-06-04 22:44:02,774 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:44:15] 2025-06-04 22:44:02,774 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:44:15] 2025-06-04 22:44:02,774 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:44:15] 2025-06-04 22:44:02,826 | INFO     | all job control threads have been joined
[2025-06-04 18:44:15] 2025-06-04 22:44:03,016 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:44:15] 2025-06-04 22:44:03,017 | INFO     | aborting loop
[2025-06-04 18:44:15] 2025-06-04 22:44:03,126 | INFO     | all payload control threads have been joined
[2025-06-04 18:44:15] 2025-06-04 22:44:03,390 | INFO     | all data control threads have been joined
[2025-06-04 18:44:15] 2025-06-04 22:44:03,698 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:03,710 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:03,833 | INFO     | [job] control thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,023 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,033 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,033 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,133 | INFO     | [payload] control thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,397 | INFO     | [data] control thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,408 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,409 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,420 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,701 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:04,880 | INFO     | [job] validate thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:05,097 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:44:15] 2025-06-04 22:44:05,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:44:15] 2025-06-04 22:44:06,104 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:09,404 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:44:15] 2025-06-04 22:44:09,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140633235515200)>', '<ExcThread(monitor, started 140632882386688)>']
[2025-06-04 18:44:15] 2025-06-04 22:44:09,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:44:15] 2025-06-04 22:44:09,817 | INFO     | [monitor] control thread has ended
[2025-06-04 18:44:15] 2025-06-04 22:44:14,614 | INFO     | all workflow threads have been joined
[2025-06-04 18:44:15] 2025-06-04 22:44:14,615 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:44:15] 2025-06-04 22:44:14,615 | INFO     | traces error code: 0
[2025-06-04 18:44:15] 2025-06-04 22:44:14,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:44:15] 2025-06-04 22:44:14,998 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:44:15] 2025-06-04 22:44:15,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:44:15] 2025-06-04 22:44:15,074 [wrapper] pilotpid: 2668181
[2025-06-04 18:44:15] 2025-06-04 22:44:15,083 [wrapper] Pilot exit status: 0
[2025-06-04 18:44:15] 2025-06-04 22:44:15,162 [wrapper] pandaids: 6667435297
[2025-06-04 18:44:15] 2025-06-04 22:44:15,395 [wrapper] cleanup supervisor_pilot 3480350 2668182
[2025-06-04 18:44:15] 2025-06-04 22:44:15,399 [wrapper] Test setup, not cleaning
[2025-06-04 18:44:15] 2025-06-04 22:44:15,402 [wrapper] apfmon messages muted
[2025-06-04 18:44:15] 2025-06-04 22:44:15,405 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:44:15] 2025-06-04 22:44:15,408 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:44:15]  *** Error codes and diagnostics ***
[2025-06-04 18:44:15]     "exeErrorCode": 0,
[2025-06-04 18:44:15]     "exeErrorDiag": "",
[2025-06-04 18:44:15]     "pilotErrorCode": 0,
[2025-06-04 18:44:15]     "pilotErrorDiag": "",
[2025-06-04 18:44:15]  *** Listing of results directory ***
[2025-06-04 18:44:15] total 418044
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas    495897 May 27 14:37 pilot3.tar.gz
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas      5111 May 27 15:22 queuedata.json
[2025-06-04 18:44:15] -rwx------. 1 boincer umatlas     37140 May 27 15:24 runpilot2-wrapper.sh
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas       100 Jun  4 16:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:44:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 16:05 run_atlas
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas       105 Jun  4 16:05 job.xml
[2025-06-04 18:44:15] -rw-r--r--. 2 boincer umatlas 226543723 Jun  4 16:05 EVNT.44871834._002836.pool.root.1
[2025-06-04 18:44:15] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 16:05 start_atlas.sh
[2025-06-04 18:44:15] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 16:05 shared
[2025-06-04 18:44:15] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 16:05 input.tar.gz
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas         0 Jun  4 16:05 boinc_lockfile
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas      2558 Jun  4 16:05 pandaJob.out
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas    991007 Jun  4 16:05 agis_schedconf.cvmfs.json
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas   1598969 Jun  4 16:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:44:15] drwx------. 4 boincer umatlas      4096 Jun  4 16:05 pilot3
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas      6840 Jun  4 18:38 init_data.xml
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas 195324763 Jun  4 18:43 HITS.44871837._072254.pool.root.1
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas       530 Jun  4 18:43 boinc_task_state.xml
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas      1041 Jun  4 18:43 memory_monitor_summary.json
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas    389108 Jun  4 18:43 log.44871837._072254.job.log.tgz.1
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas        95 Jun  4 18:43 pilot_heartbeat.json
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 18:43 boinc_mmap_file
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas        27 Jun  4 18:43 wrapper_checkpoint.txt
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas      7715 Jun  4 18:43 heartbeat.json
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas      4353 Jun  4 18:44 pilotlog.txt
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas    801342 Jun  4 18:44 log.44871837._072254.job.log.1
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas       357 Jun  4 18:44 output.list
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas       620 Jun  4 18:44 runtime_log
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas   1208320 Jun  4 18:44 result.tar.gz
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas       650 Jun  4 18:44 YsvLDmq5Ee7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGCaKDmIte4Oo.diag
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas      8651 Jun  4 18:44 runtime_log.err
[2025-06-04 18:44:15] -rw-r--r--. 1 boincer umatlas     16475 Jun  4 18:44 stderr.txt
[2025-06-04 18:44:15] HITS file was successfully produced:
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas 195324763 Jun  4 18:43 shared/HITS.pool.root.1
[2025-06-04 18:44:15]  *** Contents of shared directory: ***
[2025-06-04 18:44:15] total 413688
[2025-06-04 18:44:15] -rw-r--r--. 2 boincer umatlas 226543723 Jun  4 16:05 ATLAS.root_0
[2025-06-04 18:44:15] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 16:05 start_atlas.sh
[2025-06-04 18:44:15] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 16:05 input.tar.gz
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas 195324763 Jun  4 18:43 HITS.pool.root.1
[2025-06-04 18:44:15] -rw-------. 1 boincer umatlas   1208320 Jun  4 18:44 result.tar.gz
18:44:16 (2659998): run_atlas exited; CPU time 53501.397855
18:44:16 (2659998): called boinc_finish(0)

</stderr_txt>
]]>

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