Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:21:37 (5003): wrapper (7.7.26015): starting
10:21:37 (5003): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 10:21:38] Arguments: --nthreads 8
[2025-06-05 10:21:38] Threads: 8
[2025-06-05 10:21:38] Checking for CVMFS
[2025-06-05 10:21:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 10:21:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 10:21:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 10:21:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 10:21:40] 2.11.2.0 30615 34379 93192 146812 3 16 14933375 25165824 4688 130560 0 17889817 99.841 18749279 2626 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 10:21:40] CVMFS is ok
[2025-06-05 10:21:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:21:40] Checking for apptainer binary...
[2025-06-05 10:21:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 10:21:40] Running /usr/bin/apptainer --version
[2025-06-05 10:21:40] apptainer version 1.3.2-1.el7
[2025-06-05 10:21:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:23:28] cg-vwn418.simple-grid.lan
[2025-06-05 11:23:28] apptainer works
[2025-06-05 11:23:28] Set ATHENA_PROC_NUMBER=8
[2025-06-05 11:23:28] Set ATHENA_CORE_NUMBER=8
[2025-06-05 11:23:28] Starting ATLAS job with PandaID=6679993025
[2025-06-05 11:23:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 16:53:50]  *** The last 200 lines of the pilot log: ***
[2025-06-05 16:53:50] 2025-06-05 13:14:32,752 | INFO     | extracted standard info from prmon json
[2025-06-05 16:53:50] 2025-06-05 13:14:32,752 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 16:53:50] 2025-06-05 13:14:32,752 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 16:53:50] 2025-06-05 13:14:32,753 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 16:53:50] 2025-06-05 13:14:32,753 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 16:53:50] 2025-06-05 13:14:32,758 | INFO     | fitting pss+swap vs Time
[2025-06-05 16:53:50] 2025-06-05 13:14:32,759 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 16:53:50] 2025-06-05 13:14:32,760 | INFO     | sum of deviations: 82269169083.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,761 | INFO     | mean x: 1749122591.5
[2025-06-05 16:53:50] 2025-06-05 13:14:32,761 | INFO     | mean y: 2417804.2429906544
[2025-06-05 16:53:50] 2025-06-05 13:14:32,761 | INFO     | -- intersect: -47350538683.163345
[2025-06-05 16:53:50] 2025-06-05 13:14:32,761 | INFO     | intersect: -47350538683.163345
[2025-06-05 16:53:50] 2025-06-05 13:14:32,761 | INFO     | chi2: 7.681145458713855
[2025-06-05 16:53:50] 2025-06-05 13:14:32,762 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,763 | INFO     | sum of deviations: 94249210951.99998
[2025-06-05 16:53:50] 2025-06-05 13:14:32,763 | INFO     | mean x: 1749122439.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,764 | INFO     | mean y: 2426389.5550239235
[2025-06-05 16:53:50] 2025-06-05 13:14:32,764 | INFO     | -- intersect: -58233447177.67172
[2025-06-05 16:53:50] 2025-06-05 13:14:32,764 | INFO     | intersect: -58233447177.67172
[2025-06-05 16:53:50] 2025-06-05 13:14:32,764 | INFO     | chi2: 6.989091466277232
[2025-06-05 16:53:50] 2025-06-05 13:14:32,764 | INFO     | current chi2=6.989091466277232 (change=9.009775900696221 %)
[2025-06-05 16:53:50] 2025-06-05 13:14:32,764 | INFO     | right removable region: 208
[2025-06-05 16:53:50] 2025-06-05 13:14:32,765 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,766 | INFO     | sum of deviations: 8756542557.999994
[2025-06-05 16:53:50] 2025-06-05 13:14:32,767 | INFO     | mean x: 1749122744.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,767 | INFO     | mean y: 2471639.138755981
[2025-06-05 16:53:50] 2025-06-05 13:14:32,767 | INFO     | -- intersect: -5408130625.46948
[2025-06-05 16:53:50] 2025-06-05 13:14:32,767 | INFO     | intersect: -5408130625.46948
[2025-06-05 16:53:50] 2025-06-05 13:14:32,767 | INFO     | chi2: 2.7163468962180755
[2025-06-05 16:53:50] 2025-06-05 13:14:32,767 | INFO     | current chi2=2.7163468962180755 (change=64.63617424226067 %)
[2025-06-05 16:53:50] 2025-06-05 13:14:32,768 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,769 | INFO     | sum of deviations: -34141041444.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,770 | INFO     | mean x: 1749122896.5
[2025-06-05 16:53:50] 2025-06-05 13:14:32,770 | INFO     | mean y: 2504482.705882353
[2025-06-05 16:53:50] 2025-06-05 13:14:32,770 | INFO     | -- intersect: 22687494853.761387
[2025-06-05 16:53:50] 2025-06-05 13:14:32,770 | INFO     | intersect: 22687494853.761387
[2025-06-05 16:53:50] 2025-06-05 13:14:32,770 | INFO     | chi2: 0.9625675636993901
[2025-06-05 16:53:50] 2025-06-05 13:14:32,771 | INFO     | current chi2=0.9625675636993901 (change=64.56389406524046 %)
[2025-06-05 16:53:50] 2025-06-05 13:14:32,771 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,773 | INFO     | sum of deviations: -38990335752.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,773 | INFO     | mean x: 1749123049.0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,773 | INFO     | mean y: 2508368.0351758795
[2025-06-05 16:53:50] 2025-06-05 13:14:32,773 | INFO     | -- intersect: 27911918092.899982
[2025-06-05 16:53:50] 2025-06-05 13:14:32,773 | INFO     | intersect: 27911918092.899982
[2025-06-05 16:53:50] 2025-06-05 13:14:32,773 | INFO     | chi2: 0.9153498492348225
[2025-06-05 16:53:50] 2025-06-05 13:14:32,774 | INFO     | current chi2=0.9153498492348225 (change=4.905392228582685 %)
[2025-06-05 16:53:50] 2025-06-05 13:14:32,774 | INFO     | left removable region: 30
[2025-06-05 16:53:50] 2025-06-05 13:14:32,774 | INFO     | sum of square deviations: 1748737904.5
[2025-06-05 16:53:50] 2025-06-05 13:14:32,775 | INFO     | sum of deviations: -6487021118.5
[2025-06-05 16:53:50] 2025-06-05 13:14:32,776 | INFO     | mean x: 1749123323.5
[2025-06-05 16:53:50] 2025-06-05 13:14:32,776 | INFO     | mean y: 2502350.837078652
[2025-06-05 16:53:50] 2025-06-05 13:14:32,776 | INFO     | -- intersect: 6490953198.278184
[2025-06-05 16:53:50] 2025-06-05 13:14:32,776 | INFO     | intersect: 6490953198.278184
[2025-06-05 16:53:50] 2025-06-05 13:14:32,776 | INFO     | chi2: 0.05629384947758228
[2025-06-05 16:53:50] 2025-06-05 13:14:32,776 | INFO     | -- intersect: 6490953198.278184
[2025-06-05 16:53:50] 2025-06-05 13:14:32,776 | INFO     | current memory leak: -3.71 B/s (using 178 data points, chi2=0.06)
[2025-06-05 16:53:50] 2025-06-05 13:14:32,777 | INFO     | ..............................
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . Timing measurements:
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . get job = 0 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . initial setup = 4 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . payload setup = 170 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . stage-in = 0 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . payload execution = 13149 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . stage-out = 80 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | . log creation = 1 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,778 | INFO     | ..............................
[2025-06-05 16:53:50] 2025-06-05 13:14:32,928 | INFO     | 
[2025-06-05 16:53:50] 2025-06-05 13:14:32,928 | INFO     | job summary report
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | --------------------------------------------------
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | PanDA job id: 6679993025
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | task id: 45006595
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | errors: (none)
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | pilot state: finished 
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | transexitcode: 0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | exeerrorcode: 0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | exeerrordiag: 
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | exitcode: 0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,929 | INFO     | exitmsg: OK
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | cpuconsumptiontime: 48374 s
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | nevents: 400
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | neventsw: 0
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | pid: 22008
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | pgrp: 22008
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | corecount: 8
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | event service: False
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | sizes: {0: 2397064, 1: 2397319, 2: 2397319, 12: 2397347, 23: 2397375, 34: 2397403, 44: 2397559, 55: 2397587, 66: 2397615, 76: 2397643, 87: 2397699, 91: 2398213, 98
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | --------------------------------------------------
[2025-06-05 16:53:50] 2025-06-05 13:14:32,930 | INFO     | 
[2025-06-05 16:53:50] 2025-06-05 13:14:32,931 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-05 16:53:50] 2025-06-05 13:14:33,280 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,280 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,280 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | job 6679993025 has completed (purged errors)
[2025-06-05 16:53:50] 2025-06-05 13:14:33,282 | INFO     | overall cleanup function is called
[2025-06-05 16:53:50] 2025-06-05 13:14:34,292 | INFO     | --- collectZombieJob: --- 10, [22008]
[2025-06-05 16:53:50] 2025-06-05 13:14:34,293 | INFO     | zombie collector waiting for pid 22008
[2025-06-05 16:53:50] 2025-06-05 13:14:34,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 16:53:50] 2025-06-05 13:14:34,293 | INFO     | collected zombie processes
[2025-06-05 16:53:50] 2025-06-05 13:14:34,293 | INFO     | will attempt to kill all subprocesses of pid=22008
[2025-06-05 16:53:50] 2025-06-05 13:14:34,414 | INFO     | process IDs to be killed: [22008] (in reverse order)
[2025-06-05 16:53:50] 2025-06-05 13:14:35,431 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 16:53:50] 2025-06-05 13:14:35,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 16:53:50] 2025-06-05 13:14:35,435 | INFO     | did not find any defunct processes belonging to 22008
[2025-06-05 16:53:50] 2025-06-05 13:14:35,439 | INFO     | did not find any defunct processes belonging to 22008
[2025-06-05 16:53:50] 2025-06-05 13:14:35,440 | INFO     | ready for new job
[2025-06-05 16:53:50] 2025-06-05 13:14:35,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 16:53:50] 2025-06-05 13:14:35,442 | INFO     | **************************************
[2025-06-05 16:53:50] 2025-06-05 13:14:35,442 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 16:53:50] 2025-06-05 13:14:35,442 | INFO     | **************************************
[2025-06-05 16:53:50] 2025-06-05 13:14:35,443 | INFO     | 
[2025-06-05 16:53:50] 2025-06-05 13:14:35,443 | INFO     | pilot is running in a VM
[2025-06-05 16:53:50] 2025-06-05 13:14:35,443 | INFO     | architecture information:
[2025-06-05 16:53:50] 2025-06-05 13:14:35,446 | INFO     | executing command: cat /etc/os-release
[2025-06-05 16:53:50] 2025-06-05 13:14:35,590 | INFO     | cat /etc/os-release:
[2025-06-05 16:53:50] NAME="CentOS Linux"
[2025-06-05 16:53:50] VERSION="7 (Core)"
[2025-06-05 16:53:50] ID="centos"
[2025-06-05 16:53:50] ID_LIKE="rhel fedora"
[2025-06-05 16:53:50] VERSION_ID="7"
[2025-06-05 16:53:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 16:53:50] ANSI_COLOR="0;31"
[2025-06-05 16:53:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 16:53:50] HOME_URL="https://www.centos.org/"
[2025-06-05 16:53:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 16:53:50] 
[2025-06-05 16:53:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 16:53:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 16:53:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 16:53:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 16:53:50] 
[2025-06-05 16:53:50] 2025-06-05 13:14:35,591 | INFO     | **************************************
[2025-06-05 16:53:50] 2025-06-05 13:14:36,094 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-05 16:53:50] 2025-06-05 13:14:36,231 | INFO     | sufficient remaining disk space (496503881728 B)
[2025-06-05 16:53:50] 2025-06-05 13:14:36,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 16:53:50] 2025-06-05 13:14:36,231 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 16:53:50] 2025-06-05 13:14:36,231 | INFO     | update_server=False
[2025-06-05 16:53:50] 2025-06-05 13:14:36,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 16:53:50] 2025-06-05 13:14:36,232 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 16:53:50] 2025-06-05 13:14:36,233 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 16:53:50] 2025-06-05 13:14:36,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 16:53:50] 2025-06-05 13:14:36,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 16:53:50] 2025-06-05 13:14:36,294 | INFO     | all job control threads have been joined
[2025-06-05 16:53:50] 2025-06-05 13:14:36,622 | INFO     | all data control threads have been joined
[2025-06-05 16:53:50] 2025-06-05 13:14:36,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 16:53:50] 2025-06-05 13:14:37,184 | INFO     | all payload control threads have been joined
[2025-06-05 16:53:50] 2025-06-05 13:14:37,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 16:53:50] 2025-06-05 13:14:37,219 | INFO     | aborting loop
[2025-06-05 16:53:50] 2025-06-05 13:14:37,237 | INFO     | [job] retrieve thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:37,299 | INFO     | [job] control thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:37,400 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:37,487 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:37,523 | INFO     | [job] validate thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:37,593 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:37,628 | INFO     | [data] control thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:37,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 16:53:50] 2025-06-05 13:14:38,190 | INFO     | [payload] control thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:38,224 | INFO     | [job] job monitor thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:38,345 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 16:53:50] 2025-06-05 13:14:38,433 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:38,532 | INFO     | [data] copytool_in thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:38,640 | INFO     | [payload] failed_post thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:38,641 | INFO     | [payload] validate_post thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:38,952 | INFO     | [job] queue monitor thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:39,000 | INFO     | [data] copytool_out thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:42,353 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 16:53:50] 2025-06-05 13:14:43,146 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228599867200)>', '<ExcThread(monitor, started 140227930748672)>']
[2025-06-05 16:53:50] 2025-06-05 13:14:43,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 16:53:50] 2025-06-05 13:14:43,275 | INFO     | [monitor] control thread has ended
[2025-06-05 16:53:50] 2025-06-05 13:14:48,172 | INFO     | all workflow threads have been joined
[2025-06-05 16:53:50] 2025-06-05 13:14:48,172 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 16:53:50] 2025-06-05 13:14:48,173 | INFO     | traces error code: 0
[2025-06-05 16:53:50] 2025-06-05 13:14:48,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 16:53:50] 2025-06-05 13:14:48,658 [wrapper] ==== pilot stdout END ====
[2025-06-05 16:53:50] 2025-06-05 13:14:48,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 16:53:50] 2025-06-05 13:14:48,844 [wrapper] pilotpid: 11466
[2025-06-05 16:53:50] 2025-06-05 13:14:48,946 [wrapper] Pilot exit status: 0
[2025-06-05 16:53:50] 2025-06-05 13:14:49,372 [wrapper] pandaids: 6679993025
[2025-06-05 16:53:50] 2025-06-05 13:14:50,172 [wrapper] cleanup supervisor_pilot  3969 11467
[2025-06-05 16:53:50] 2025-06-05 13:14:50,284 [wrapper] Test setup, not cleaning
[2025-06-05 16:53:50] 2025-06-05 13:14:50,353 [wrapper] apfmon messages muted
[2025-06-05 16:53:50] 2025-06-05 13:14:50,453 [wrapper] ==== wrapper stdout END ====
[2025-06-05 16:53:50] 2025-06-05 13:14:50,558 [wrapper] ==== wrapper stderr END ====
[2025-06-05 16:53:50]  *** Error codes and diagnostics ***
[2025-06-05 16:53:50]     "exeErrorCode": 0,
[2025-06-05 16:53:50]     "exeErrorDiag": "",
[2025-06-05 16:53:50]     "pilotErrorCode": 0,
[2025-06-05 16:53:50]     "pilotErrorDiag": "",
[2025-06-05 16:53:50]  *** Listing of results directory ***
[2025-06-05 16:53:50] total 392512
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc    495897 Jun  4 21:30 pilot3.tar.gz
[2025-06-05 16:53:50] -rwx------. 1 boinc boinc     37140 Jun  4 21:41 runpilot2-wrapper.sh
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc      5111 Jun  4 21:41 queuedata.json
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc       100 Jun  5 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 16:53:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 10:21 run_atlas
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc       105 Jun  5 10:21 job.xml
[2025-06-05 16:53:50] -rw-r--r--. 2 boinc boinc 216656810 Jun  5 10:21 EVNT.45006593._001826.pool.root.1
[2025-06-05 16:53:50] -rw-r--r--. 2 boinc boinc    508885 Jun  5 10:21 input.tar.gz
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc      6392 Jun  5 10:21 init_data.xml
[2025-06-05 16:53:50] -rw-r--r--. 2 boinc boinc     15093 Jun  5 10:21 start_atlas.sh
[2025-06-05 16:53:50] drwxrwx--x. 2 boinc boinc        68 Jun  5 10:21 shared
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc         0 Jun  5 10:21 boinc_lockfile
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc      2524 Jun  5 11:23 pandaJob.out
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc    983289 Jun  5 11:26 agis_schedconf.cvmfs.json
[2025-06-05 16:53:50] drwx------. 4 boinc boinc      4096 Jun  5 11:26 pilot3
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc 178346062 Jun  5 15:10 HITS.45006595._056890.pool.root.1
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc       531 Jun  5 15:10 boinc_task_state.xml
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc      1014 Jun  5 15:11 memory_monitor_summary.json
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc   1598969 Jun  5 15:11 agis_ddmendpoints.agis.ALL.json
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc    388784 Jun  5 15:13 log.45006595._056890.job.log.tgz.1
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc        95 Jun  5 15:13 pilot_heartbeat.json
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc      7688 Jun  5 15:14 heartbeat.json
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc      4539 Jun  5 15:14 pilotlog.txt
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc   1170598 Jun  5 15:14 log.45006595._056890.job.log.1
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc       357 Jun  5 15:14 output.list
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc       620 Jun  5 15:14 runtime_log
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc   1576960 Jun  5 15:14 result.tar.gz
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc       657 Jun  5 15:14 z75KDmjA9g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS2nKDmxfbtFo.diag
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc      8659 Jun  5 15:14 runtime_log.err
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc        28 Jun  5 16:53 wrapper_checkpoint.txt
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc      8192 Jun  5 16:53 boinc_mmap_file
[2025-06-05 16:53:50] -rw-r--r--. 1 boinc boinc     20499 Jun  5 16:53 stderr.txt
[2025-06-05 16:53:50] HITS file was successfully produced:
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc 178346062 Jun  5 15:10 shared/HITS.pool.root.1
[2025-06-05 16:53:50]  *** Contents of shared directory: ***
[2025-06-05 16:53:50] total 387804
[2025-06-05 16:53:50] -rw-r--r--. 2 boinc boinc 216656810 Jun  5 10:21 ATLAS.root_0
[2025-06-05 16:53:50] -rw-r--r--. 2 boinc boinc    508885 Jun  5 10:21 input.tar.gz
[2025-06-05 16:53:50] -rw-r--r--. 2 boinc boinc     15093 Jun  5 10:21 start_atlas.sh
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc 178346062 Jun  5 15:10 HITS.pool.root.1
[2025-06-05 16:53:50] -rw-------. 1 boinc boinc   1576960 Jun  5 15:14 result.tar.gz
16:53:52 (5003): run_atlas exited; CPU time 48555.155202
16:53:52 (5003): called boinc_finish(0)

</stderr_txt>
]]>

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