Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:53:11 (30697): wrapper (7.7.26015): starting
04:53:11 (30697): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 04:53:11] Arguments: --nthreads 8
[2025-06-05 04:53:11] Threads: 8
[2025-06-05 04:53:11] Checking for CVMFS
[2025-06-05 04:53:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:53:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:53:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:53:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:53:13] 2.11.2.0 7179 34192 89184 146802 2 59 17277846 25165825 3531 130560 0 18958625 99.848 18893860 2464 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 04:53:13] CVMFS is ok
[2025-06-05 04:53:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:53:13] Checking for apptainer binary...
[2025-06-05 04:53:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:53:13] Running /usr/bin/apptainer --version
[2025-06-05 04:53:13] apptainer version 1.3.2-1.el7
[2025-06-05 04:53:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:53:18] cg-vwn286.simple-grid.lan
[2025-06-05 04:53:18] apptainer works
[2025-06-05 04:53:18] Set ATHENA_PROC_NUMBER=8
[2025-06-05 04:53:18] Set ATHENA_CORE_NUMBER=8
[2025-06-05 04:53:18] Starting ATLAS job with PandaID=6667883221
[2025-06-05 04:53:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:06:53]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:06:53] 2025-06-05 08:18:09,971 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6667883221/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:06:53] 2025-06-05 08:18:09,972 | INFO     | extracted standard info from prmon json
[2025-06-05 12:06:53] 2025-06-05 08:18:09,972 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:06:53] 2025-06-05 08:18:09,972 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:06:53] 2025-06-05 08:18:09,973 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:06:53] 2025-06-05 08:18:09,973 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:06:53] 2025-06-05 08:18:09,979 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:06:53] 2025-06-05 08:18:09,980 | INFO     | sum of square deviations: 9508390372.0
[2025-06-05 12:06:53] 2025-06-05 08:18:09,983 | INFO     | sum of deviations: 3544964553.0000114
[2025-06-05 12:06:53] 2025-06-05 08:18:09,984 | INFO     | mean x: 1749101857.0
[2025-06-05 12:06:53] 2025-06-05 08:18:09,984 | INFO     | mean y: 2485746.159744409
[2025-06-05 12:06:53] 2025-06-05 08:18:09,984 | INFO     | -- intersect: -649622953.6377038
[2025-06-05 12:06:53] 2025-06-05 08:18:09,984 | INFO     | intersect: -649622953.6377038
[2025-06-05 12:06:53] 2025-06-05 08:18:09,984 | INFO     | chi2: 3.271250226247195
[2025-06-05 12:06:53] 2025-06-05 08:18:09,985 | INFO     | sum of square deviations: 9059954057.0
[2025-06-05 12:06:53] 2025-06-05 08:18:09,988 | INFO     | sum of deviations: 46882767132.99999
[2025-06-05 12:06:53] 2025-06-05 08:18:09,988 | INFO     | mean x: 1749101704.5
[2025-06-05 12:06:53] 2025-06-05 08:18:09,988 | INFO     | mean y: 2500340.4155844157
[2025-06-05 12:06:53] 2025-06-05 08:18:09,988 | INFO     | -- intersect: -9048619277.641312
[2025-06-05 12:06:53] 2025-06-05 08:18:09,989 | INFO     | intersect: -9048619277.641312
[2025-06-05 12:06:53] 2025-06-05 08:18:09,989 | INFO     | chi2: 1.5519498709682094
[2025-06-05 12:06:53] 2025-06-05 08:18:09,989 | INFO     | current chi2=1.5519498709682094 (change=52.55789794018237 %)
[2025-06-05 12:06:53] 2025-06-05 08:18:09,990 | INFO     | sum of square deviations: 8625843592.0
[2025-06-05 12:06:53] 2025-06-05 08:18:09,992 | INFO     | sum of deviations: 45967494707.0
[2025-06-05 12:06:53] 2025-06-05 08:18:09,993 | INFO     | mean x: 1749101552.0
[2025-06-05 12:06:53] 2025-06-05 08:18:09,993 | INFO     | mean y: 2500018.8613861385
[2025-06-05 12:06:53] 2025-06-05 08:18:09,993 | INFO     | -- intersect: -9318538031.04411
[2025-06-05 12:06:53] 2025-06-05 08:18:09,993 | INFO     | intersect: -9318538031.04411
[2025-06-05 12:06:53] 2025-06-05 08:18:09,994 | INFO     | chi2: 1.5524090677065312
[2025-06-05 12:06:53] 2025-06-05 08:18:09,994 | INFO     | current chi2=1.5524090677065312 (change=-0.029588374399964718 %)
[2025-06-05 12:06:53] 2025-06-05 08:18:09,994 | INFO     | right removable region: 302
[2025-06-05 12:06:53] 2025-06-05 08:18:09,994 | INFO     | sum of square deviations: 9059954057.0
[2025-06-05 12:06:53] 2025-06-05 08:18:09,997 | INFO     | sum of deviations: -45159682199.00001
[2025-06-05 12:06:53] 2025-06-05 08:18:09,997 | INFO     | mean x: 1749102009.5
[2025-06-05 12:06:53] 2025-06-05 08:18:09,998 | INFO     | mean y: 2502196.811688312
[2025-06-05 12:06:53] 2025-06-05 08:18:09,998 | INFO     | -- intersect: 8720967035.120998
[2025-06-05 12:06:53] 2025-06-05 08:18:09,998 | INFO     | intersect: 8720967035.120998
[2025-06-05 12:06:53] 2025-06-05 08:18:09,998 | INFO     | chi2: 1.8552963744955484
[2025-06-05 12:06:53] 2025-06-05 08:18:09,998 | INFO     | current chi2=1.8552963744955484 (change=43.28479186308044 %)
[2025-06-05 12:06:53] 2025-06-05 08:18:09,999 | INFO     | sum of square deviations: 8625843592.0
[2025-06-05 12:06:53] 2025-06-05 08:18:10,002 | INFO     | sum of deviations: -46633484350.00001
[2025-06-05 12:06:53] 2025-06-05 08:18:10,002 | INFO     | mean x: 1749102162.0
[2025-06-05 12:06:53] 2025-06-05 08:18:10,002 | INFO     | mean y: 2502702.8415841586
[2025-06-05 12:06:53] 2025-06-05 08:18:10,002 | INFO     | -- intersect: 9458589800.667803
[2025-06-05 12:06:53] 2025-06-05 08:18:10,002 | INFO     | intersect: 9458589800.667803
[2025-06-05 12:06:53] 2025-06-05 08:18:10,003 | INFO     | chi2: 1.8446880369901693
[2025-06-05 12:06:53] 2025-06-05 08:18:10,003 | INFO     | current chi2=1.8446880369901693 (change=0.5717866779243579 %)
[2025-06-05 12:06:53] 2025-06-05 08:18:10,003 | INFO     | left removable region: 20
[2025-06-05 12:06:53] 2025-06-05 08:18:10,004 | INFO     | sum of square deviations: 6953769450.5
[2025-06-05 12:06:53] 2025-06-05 08:18:10,006 | INFO     | sum of deviations: 14882779664.5
[2025-06-05 12:06:53] 2025-06-05 08:18:10,006 | INFO     | mean x: 1749102131.5
[2025-06-05 12:06:53] 2025-06-05 08:18:10,007 | INFO     | mean y: 2510514.244680851
[2025-06-05 12:06:53] 2025-06-05 08:18:10,007 | INFO     | -- intersect: -3740998933.275189
[2025-06-05 12:06:53] 2025-06-05 08:18:10,007 | INFO     | intersect: -3740998933.275189
[2025-06-05 12:06:53] 2025-06-05 08:18:10,007 | INFO     | chi2: 0.016604645467118907
[2025-06-05 12:06:53] 2025-06-05 08:18:10,007 | INFO     | -- intersect: -3740998933.275189
[2025-06-05 12:06:53] 2025-06-05 08:18:10,008 | INFO     | current memory leak: 2.14 B/s (using 282 data points, chi2=0.02)
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | ..............................
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . Timing measurements:
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . get job = 0 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . initial setup = 5 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . payload setup = 16 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . stage-in = 0 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . payload execution = 19070 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . stage-out = 5 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | . log creation = 1 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,009 | INFO     | ..............................
[2025-06-05 12:06:53] 2025-06-05 08:18:10,155 | INFO     | 
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | job summary report
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | --------------------------------------------------
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | PanDA job id: 6667883221
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | task id: 44871837
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | errors: (none)
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | pilot state: finished 
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | transexitcode: 0
[2025-06-05 12:06:53] 2025-06-05 08:18:10,156 | INFO     | exeerrorcode: 0
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | exeerrordiag: 
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | exitcode: 0
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | exitmsg: OK
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | cpuconsumptiontime: 72508 s
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | nevents: 400
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | neventsw: 0
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | pid: 13099
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | pgrp: 13099
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | corecount: 8
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | event service: False
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | sizes: {0: 2397114, 1: 2397198, 2: 2397397, 12: 2397397, 23: 2397425, 34: 2397453, 45: 2397609, 55: 2397637, 66: 2397665, 77: 2397693, 83: 2397955, 87: 2398291, 19
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | --------------------------------------------------
[2025-06-05 12:06:53] 2025-06-05 08:18:10,157 | INFO     | 
[2025-06-05 12:06:53] 2025-06-05 08:18:10,158 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 12:06:53] 2025-06-05 08:18:10,728 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:06:53] 2025-06-05 08:18:10,730 | INFO     | job 6667883221 has completed (purged errors)
[2025-06-05 12:06:53] 2025-06-05 08:18:10,731 | INFO     | overall cleanup function is called
[2025-06-05 12:06:53] 2025-06-05 08:18:11,740 | INFO     | --- collectZombieJob: --- 10, [13099]
[2025-06-05 12:06:53] 2025-06-05 08:18:11,740 | INFO     | zombie collector waiting for pid 13099
[2025-06-05 12:06:53] 2025-06-05 08:18:11,740 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:06:53] 2025-06-05 08:18:11,740 | INFO     | collected zombie processes
[2025-06-05 12:06:53] 2025-06-05 08:18:11,740 | INFO     | will attempt to kill all subprocesses of pid=13099
[2025-06-05 12:06:53] 2025-06-05 08:18:11,877 | INFO     | process IDs to be killed: [13099] (in reverse order)
[2025-06-05 12:06:53] 2025-06-05 08:18:12,875 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:06:53] 2025-06-05 08:18:12,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:06:53] 2025-06-05 08:18:12,879 | INFO     | did not find any defunct processes belonging to 13099
[2025-06-05 12:06:53] 2025-06-05 08:18:12,883 | INFO     | did not find any defunct processes belonging to 13099
[2025-06-05 12:06:53] 2025-06-05 08:18:12,884 | INFO     | ready for new job
[2025-06-05 12:06:53] 2025-06-05 08:18:12,884 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:06:53] 2025-06-05 08:18:12,886 | INFO     | **************************************
[2025-06-05 12:06:53] 2025-06-05 08:18:12,887 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:06:53] 2025-06-05 08:18:12,887 | INFO     | **************************************
[2025-06-05 12:06:53] 2025-06-05 08:18:12,887 | INFO     | 
[2025-06-05 12:06:53] 2025-06-05 08:18:12,888 | INFO     | pilot is running in a VM
[2025-06-05 12:06:53] 2025-06-05 08:18:12,888 | INFO     | architecture information:
[2025-06-05 12:06:53] 2025-06-05 08:18:12,897 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:06:53] 2025-06-05 08:18:13,062 | INFO     | cat /etc/os-release:
[2025-06-05 12:06:53] NAME="CentOS Linux"
[2025-06-05 12:06:53] VERSION="7 (Core)"
[2025-06-05 12:06:53] ID="centos"
[2025-06-05 12:06:53] ID_LIKE="rhel fedora"
[2025-06-05 12:06:53] VERSION_ID="7"
[2025-06-05 12:06:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:06:53] ANSI_COLOR="0;31"
[2025-06-05 12:06:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:06:53] HOME_URL="https://www.centos.org/"
[2025-06-05 12:06:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:06:53] 
[2025-06-05 12:06:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:06:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:06:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:06:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:06:53] 
[2025-06-05 12:06:53] 2025-06-05 08:18:13,063 | INFO     | **************************************
[2025-06-05 12:06:53] 2025-06-05 08:18:13,566 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 12:06:53] 2025-06-05 08:18:13,805 | INFO     | sufficient remaining disk space (497243127808 B)
[2025-06-05 12:06:53] 2025-06-05 08:18:13,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:06:53] 2025-06-05 08:18:13,806 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:06:53] 2025-06-05 08:18:13,806 | INFO     | update_server=False
[2025-06-05 12:06:53] 2025-06-05 08:18:13,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:06:53] 2025-06-05 08:18:13,807 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:06:53] 2025-06-05 08:18:13,807 | INFO     | aborting loop
[2025-06-05 12:06:53] 2025-06-05 08:18:13,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:06:53] 2025-06-05 08:18:14,203 | INFO     | all data control threads have been joined
[2025-06-05 12:06:53] 2025-06-05 08:18:14,336 | INFO     | all job control threads have been joined
[2025-06-05 12:06:53] 2025-06-05 08:18:14,609 | INFO     | all payload control threads have been joined
[2025-06-05 12:06:53] 2025-06-05 08:18:14,763 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:06:53] 2025-06-05 08:18:14,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:06:53] 2025-06-05 08:18:14,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:06:53] 2025-06-05 08:18:14,813 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:14,817 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:14,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:06:53] 2025-06-05 08:18:14,899 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,089 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,141 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,151 | INFO     | [job] validate thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:06:53] 2025-06-05 08:18:15,209 | INFO     | [data] control thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,337 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,344 | INFO     | [job] control thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,469 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,616 | INFO     | [payload] control thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,820 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,841 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:15,907 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:16,176 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:18,862 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:06:53] 2025-06-05 08:18:20,557 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056244864832)>', '<ExcThread(monitor, started 140055553222400)>']
[2025-06-05 12:06:53] 2025-06-05 08:18:20,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:06:53] 2025-06-05 08:18:20,799 | INFO     | [monitor] control thread has ended
[2025-06-05 12:06:53] 2025-06-05 08:18:25,582 | INFO     | all workflow threads have been joined
[2025-06-05 12:06:53] 2025-06-05 08:18:25,583 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:06:53] 2025-06-05 08:18:25,583 | INFO     | traces error code: 0
[2025-06-05 12:06:53] 2025-06-05 08:18:25,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:06:53] 2025-06-05 08:18:26,021 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:06:53] 2025-06-05 08:18:26,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:06:53] 2025-06-05 08:18:26,191 [wrapper] pilotpid: 4477
[2025-06-05 12:06:53] 2025-06-05 08:18:26,248 [wrapper] Pilot exit status: 0
[2025-06-05 12:06:53] 2025-06-05 08:18:26,722 [wrapper] pandaids: 6667883221
[2025-06-05 12:06:53] 2025-06-05 08:18:27,200 [wrapper] cleanup supervisor_pilot  2206 4478
[2025-06-05 12:06:53] 2025-06-05 08:18:27,301 [wrapper] Test setup, not cleaning
[2025-06-05 12:06:53] 2025-06-05 08:18:27,341 [wrapper] apfmon messages muted
[2025-06-05 12:06:53] 2025-06-05 08:18:27,406 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:06:53] 2025-06-05 08:18:27,477 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:06:53]  *** Error codes and diagnostics ***
[2025-06-05 12:06:53]     "exeErrorCode": 0,
[2025-06-05 12:06:53]     "exeErrorDiag": "",
[2025-06-05 12:06:53]     "pilotErrorCode": 0,
[2025-06-05 12:06:53]     "pilotErrorDiag": "",
[2025-06-05 12:06:53]  *** Listing of results directory ***
[2025-06-05 12:06:53] total 426824
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc    495897 May 28 02:38 pilot3.tar.gz
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc      5111 May 28 03:20 queuedata.json
[2025-06-05 12:06:53] -rwx------. 1 boinc boinc     37140 May 28 03:21 runpilot2-wrapper.sh
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc       100 Jun  5 04:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:06:53] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 04:53 run_atlas
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc       105 Jun  5 04:53 job.xml
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc      6391 Jun  5 04:53 init_data.xml
[2025-06-05 12:06:53] -rw-r--r--. 2 boinc boinc 227643668 Jun  5 04:53 EVNT.44871834._002993.pool.root.1
[2025-06-05 12:06:53] -rw-r--r--. 2 boinc boinc     15093 Jun  5 04:53 start_atlas.sh
[2025-06-05 12:06:53] drwxrwx--x. 2 boinc boinc        68 Jun  5 04:53 shared
[2025-06-05 12:06:53] -rw-r--r--. 2 boinc boinc    508875 Jun  5 04:53 input.tar.gz
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc         0 Jun  5 04:53 boinc_lockfile
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc      2558 Jun  5 04:53 pandaJob.out
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc    987109 Jun  5 04:56 agis_schedconf.cvmfs.json
[2025-06-05 12:06:53] drwx------. 4 boinc boinc      4096 Jun  5 04:56 pilot3
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc 201449377 Jun  5 10:14 HITS.44871837._076526.pool.root.1
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc       531 Jun  5 10:15 boinc_task_state.xml
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc      1014 Jun  5 10:16 memory_monitor_summary.json
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc   1598969 Jun  5 10:16 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc    437673 Jun  5 10:16 log.44871837._076526.job.log.tgz.1
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc        95 Jun  5 10:18 pilot_heartbeat.json
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc      7688 Jun  5 10:18 heartbeat.json
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc      4416 Jun  5 10:18 pilotlog.txt
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc   1640978 Jun  5 10:18 log.44871837._076526.job.log.1
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc       357 Jun  5 10:18 output.list
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc       620 Jun  5 10:18 runtime_log
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc   2099200 Jun  5 10:18 result.tar.gz
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc      8659 Jun  5 10:18 runtime_log.err
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc       657 Jun  5 10:18 bRIMDmieKe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmitaKDmoSlbTo.diag
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc        28 Jun  5 12:06 wrapper_checkpoint.txt
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc      8192 Jun  5 12:06 boinc_mmap_file
[2025-06-05 12:06:53] -rw-r--r--. 1 boinc boinc     20526 Jun  5 12:06 stderr.txt
[2025-06-05 12:06:53] HITS file was successfully produced:
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc 201449377 Jun  5 10:14 shared/HITS.pool.root.1
[2025-06-05 12:06:53]  *** Contents of shared directory: ***
[2025-06-05 12:06:53] total 421608
[2025-06-05 12:06:53] -rw-r--r--. 2 boinc boinc 227643668 Jun  5 04:53 ATLAS.root_0
[2025-06-05 12:06:53] -rw-r--r--. 2 boinc boinc     15093 Jun  5 04:53 start_atlas.sh
[2025-06-05 12:06:53] -rw-r--r--. 2 boinc boinc    508875 Jun  5 04:53 input.tar.gz
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc 201449377 Jun  5 10:14 HITS.pool.root.1
[2025-06-05 12:06:53] -rw-------. 1 boinc boinc   2099200 Jun  5 10:18 result.tar.gz
12:06:55 (30697): run_atlas exited; CPU time 72763.291900
12:06:55 (30697): called boinc_finish(0)

</stderr_txt>
]]>

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