Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:29:24 (48784): wrapper (7.7.26015): starting
15:29:24 (48784): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:29:24] Arguments: --nthreads 8
[2025-06-04 15:29:24] Threads: 8
[2025-06-04 15:29:24] Checking for CVMFS
[2025-06-04 15:29:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:29:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:29:24] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:29:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:29:24] 2.11.2.0 20329 93145 314972 146792 0 22 15692901 18432000 4717 130560 0 215320096 98.876 540808115 37822 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 15:29:24] CVMFS is ok
[2025-06-04 15:29:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:29:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 15:29:24] Further information can be found at the LHC@home message board.
[2025-06-04 15:29:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:29:24] Checking for apptainer binary...
[2025-06-04 15:29:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:29:24] Running /usr/bin/apptainer --version
[2025-06-04 15:29:25] apptainer version 1.3.2-1.el7
[2025-06-04 15:29:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:29:25] c-211-9.aglt2.org
[2025-06-04 15:29:25] apptainer works
[2025-06-04 15:29:25] Set ATHENA_PROC_NUMBER=8
[2025-06-04 15:29:25] Set ATHENA_CORE_NUMBER=8
[2025-06-04 15:29:25] Starting ATLAS job with PandaID=6668051300
[2025-06-04 15:29:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:05:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:05:38] 2025-06-04 22:05:15,051 | INFO     | log transfer has been attempted: DONE
[2025-06-04 18:05:38] 2025-06-04 22:05:15,051 | INFO     | job 6668051300 has finished - writing final server update
[2025-06-04 18:05:38] 2025-06-04 22:05:15,051 | INFO     | total number of processed events: 400 (read)
[2025-06-04 18:05:38] 2025-06-04 22:05:15,056 | INFO     | executing command: lscpu
[2025-06-04 18:05:38] 2025-06-04 22:05:15,091 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 18:05:38] 2025-06-04 22:05:16,622 | INFO     | monitor loop #694: job 0:6668051300 is in state 'finished'
[2025-06-04 18:05:38] 2025-06-04 22:05:16,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,636 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 18:05:38] 2025-06-04 22:05:18,636 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668051300/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,637 | INFO     | extracted standard info from prmon json
[2025-06-04 18:05:38] 2025-06-04 22:05:18,637 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:05:38] 2025-06-04 22:05:18,637 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:05:38] 2025-06-04 22:05:18,637 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:05:38] 2025-06-04 22:05:18,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:05:38] 2025-06-04 22:05:18,639 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:05:38] 2025-06-04 22:05:18,639 | INFO     | sum of square deviations: 1110539892.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,640 | INFO     | sum of deviations: 4710056745.000002
[2025-06-04 18:05:38] 2025-06-04 22:05:18,640 | INFO     | mean x: 1749070035.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,640 | INFO     | mean y: 2500116.5359477126
[2025-06-04 18:05:38] 2025-06-04 22:05:18,640 | INFO     | -- intersect: -7415710769.155622
[2025-06-04 18:05:38] 2025-06-04 22:05:18,640 | INFO     | intersect: -7415710769.155622
[2025-06-04 18:05:38] 2025-06-04 22:05:18,640 | INFO     | chi2: 1.3341370268247914
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | sum of square deviations: 1005179777.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | sum of deviations: 4770169591.5
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | mean x: 1749069882.5
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | mean y: 2500204.2364864866
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | -- intersect: -8297865718.176991
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | intersect: -8297865718.176991
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | chi2: 1.3352360410662785
[2025-06-04 18:05:38] 2025-06-04 22:05:18,641 | INFO     | current chi2=1.3352360410662785 (change=-0.08237641407065097 %)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,642 | INFO     | right removable region: 147
[2025-06-04 18:05:38] 2025-06-04 22:05:18,642 | INFO     | sum of square deviations: 1005179777.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,642 | INFO     | sum of deviations: -15496554436.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,642 | INFO     | mean x: 1749070187.5
[2025-06-04 18:05:38] 2025-06-04 22:05:18,642 | INFO     | mean y: 2528858.689189189
[2025-06-04 18:05:38] 2025-06-04 22:05:18,642 | INFO     | -- intersect: 26967418118.472298
[2025-06-04 18:05:38] 2025-06-04 22:05:18,642 | INFO     | intersect: 26967418118.472298
[2025-06-04 18:05:38] 2025-06-04 22:05:18,643 | INFO     | chi2: 0.03778206354040199
[2025-06-04 18:05:38] 2025-06-04 22:05:18,643 | INFO     | current chi2=0.03778206354040199 (change=97.1680522479522 %)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,643 | INFO     | sum of square deviations: 906703512.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,643 | INFO     | sum of deviations: -14555883256.999998
[2025-06-04 18:05:38] 2025-06-04 22:05:18,643 | INFO     | mean x: 1749070340.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,643 | INFO     | mean y: 2527393.167832168
[2025-06-04 18:05:38] 2025-06-04 22:05:18,643 | INFO     | -- intersect: 28081456547.37772
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | intersect: 28081456547.37772
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | chi2: 0.03708466560327063
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | current chi2=0.03708466560327063 (change=1.84584395816709 %)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | left removable region: 20
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | sum of square deviations: 635130048.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | sum of deviations: -10184580983.999998
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | mean x: 1749070462.0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,644 | INFO     | mean y: 2521930.4803149607
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | -- intersect: 28049612165.079468
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | intersect: 28049612165.079468
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | chi2: 0.03469805868793547
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | -- intersect: 28049612165.079468
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | current memory leak: -16.04 B/s (using 127 data points, chi2=0.03)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | ..............................
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | . Timing measurements:
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | . get job = 0 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | . initial setup = 2 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | . payload setup = 5 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,645 | INFO     | . stage-in = 0 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,646 | INFO     | . payload execution = 9314 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,646 | INFO     | . stage-out = 0 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,646 | INFO     | . log creation = 0 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,646 | INFO     | ..............................
[2025-06-04 18:05:38] 2025-06-04 22:05:18,959 | INFO     | 
[2025-06-04 18:05:38] 2025-06-04 22:05:18,959 | INFO     | job summary report
[2025-06-04 18:05:38] 2025-06-04 22:05:18,959 | INFO     | --------------------------------------------------
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | PanDA job id: 6668051300
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | task id: 44871837
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | errors: (none)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | pilot state: finished 
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | transexitcode: 0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | exeerrorcode: 0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | exeerrordiag: 
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | exitcode: 0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | exitmsg: OK
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | cpuconsumptiontime: 68340 s
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | nevents: 400
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | neventsw: 0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | pid: 19387
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | pgrp: 19387
[2025-06-04 18:05:38] 2025-06-04 22:05:18,960 | INFO     | corecount: 8
[2025-06-04 18:05:38] 2025-06-04 22:05:18,961 | INFO     | event service: False
[2025-06-04 18:05:38] 2025-06-04 22:05:18,961 | INFO     | sizes: {0: 2397391, 4: 2397597, 11: 2397625, 9323: 2425909, 9324: 2434906, 9329: 2435020}
[2025-06-04 18:05:38] 2025-06-04 22:05:18,961 | INFO     | --------------------------------------------------
[2025-06-04 18:05:38] 2025-06-04 22:05:18,961 | INFO     | 
[2025-06-04 18:05:38] 2025-06-04 22:05:18,961 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 18:05:38] 2025-06-04 22:05:18,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,978 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,978 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,978 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:05:38] 2025-06-04 22:05:18,980 | INFO     | job 6668051300 has completed (purged errors)
[2025-06-04 18:05:38] 2025-06-04 22:05:18,980 | INFO     | overall cleanup function is called
[2025-06-04 18:05:38] 2025-06-04 22:05:19,986 | INFO     | --- collectZombieJob: --- 10, [19387]
[2025-06-04 18:05:38] 2025-06-04 22:05:19,987 | INFO     | zombie collector waiting for pid 19387
[2025-06-04 18:05:38] 2025-06-04 22:05:19,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:05:38] 2025-06-04 22:05:19,987 | INFO     | collected zombie processes
[2025-06-04 18:05:38] 2025-06-04 22:05:19,987 | INFO     | will attempt to kill all subprocesses of pid=19387
[2025-06-04 18:05:38] 2025-06-04 22:05:20,131 | INFO     | process IDs to be killed: [19387] (in reverse order)
[2025-06-04 18:05:38] 2025-06-04 22:05:20,204 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:05:38] 2025-06-04 22:05:20,205 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:05:38] 2025-06-04 22:05:20,208 | INFO     | did not find any defunct processes belonging to 19387
[2025-06-04 18:05:38] 2025-06-04 22:05:20,211 | INFO     | did not find any defunct processes belonging to 19387
[2025-06-04 18:05:38] 2025-06-04 22:05:20,211 | INFO     | ready for new job
[2025-06-04 18:05:38] 2025-06-04 22:05:20,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:05:38] 2025-06-04 22:05:20,212 | INFO     | **************************************
[2025-06-04 18:05:38] 2025-06-04 22:05:20,212 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:05:38] 2025-06-04 22:05:20,212 | INFO     | **************************************
[2025-06-04 18:05:38] 2025-06-04 22:05:20,212 | INFO     | 
[2025-06-04 18:05:38] 2025-06-04 22:05:20,214 | INFO     | architecture information:
[2025-06-04 18:05:38] 2025-06-04 22:05:20,214 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:05:38] 2025-06-04 22:05:20,226 | INFO     | cat /etc/os-release:
[2025-06-04 18:05:38] NAME="CentOS Linux"
[2025-06-04 18:05:38] VERSION="7 (Core)"
[2025-06-04 18:05:38] ID="centos"
[2025-06-04 18:05:38] ID_LIKE="rhel fedora"
[2025-06-04 18:05:38] VERSION_ID="7"
[2025-06-04 18:05:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:05:38] ANSI_COLOR="0;31"
[2025-06-04 18:05:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:05:38] HOME_URL="https://www.centos.org/"
[2025-06-04 18:05:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:05:38] 
[2025-06-04 18:05:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:05:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:05:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:05:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:05:38] 
[2025-06-04 18:05:38] 2025-06-04 22:05:20,226 | INFO     | **************************************
[2025-06-04 18:05:38] 2025-06-04 22:05:20,729 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 18:05:38] 2025-06-04 22:05:20,747 | INFO     | sufficient remaining disk space (56676581376 B)
[2025-06-04 18:05:38] 2025-06-04 22:05:20,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:05:38] 2025-06-04 22:05:20,747 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:05:38] 2025-06-04 22:05:20,748 | INFO     | update_server=False
[2025-06-04 18:05:38] 2025-06-04 22:05:20,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:05:38] 2025-06-04 22:05:20,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:05:38] 2025-06-04 22:05:20,748 | INFO     | aborting loop
[2025-06-04 18:05:38] 2025-06-04 22:05:20,898 | INFO     | all job control threads have been joined
[2025-06-04 18:05:38] 2025-06-04 22:05:20,983 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:05:38] 2025-06-04 22:05:20,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:05:38] 2025-06-04 22:05:20,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:05:38] 2025-06-04 22:05:21,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:05:38] 2025-06-04 22:05:21,299 | INFO     | all data control threads have been joined
[2025-06-04 18:05:38] 2025-06-04 22:05:21,753 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:21,754 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:21,884 | INFO     | all payload control threads have been joined
[2025-06-04 18:05:38] 2025-06-04 22:05:21,900 | INFO     | [job] control thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:22,028 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:22,194 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:22,305 | INFO     | [data] control thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:22,385 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:22,435 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:22,889 | INFO     | [payload] control thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:22,916 | INFO     | [job] validate thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:23,032 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:23,191 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:23,198 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:23,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:05:38] 2025-06-04 22:05:23,987 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:05:38] 2025-06-04 22:05:24,710 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:27,993 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:30,929 | INFO     | job.realtimelogging is not enabled
[2025-06-04 18:05:38] 2025-06-04 22:05:31,935 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:05:38] 2025-06-04 22:05:33,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139906016159552)>', '<ExcThread(monitor, started 139905556518656)>']
[2025-06-04 18:05:38] 2025-06-04 22:05:34,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:05:38] 2025-06-04 22:05:34,043 | INFO     | [monitor] control thread has ended
[2025-06-04 18:05:38] 2025-06-04 22:05:38,435 | INFO     | all workflow threads have been joined
[2025-06-04 18:05:38] 2025-06-04 22:05:38,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:05:38] 2025-06-04 22:05:38,436 | INFO     | traces error code: 0
[2025-06-04 18:05:38] 2025-06-04 22:05:38,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:05:38] 2025-06-04 22:05:38,532 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:05:38] 2025-06-04 22:05:38,535 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:05:38] 2025-06-04 22:05:38,537 [wrapper] pilotpid: 5721
[2025-06-04 18:05:38] 2025-06-04 22:05:38,539 [wrapper] Pilot exit status: 0
[2025-06-04 18:05:38] 2025-06-04 22:05:38,547 [wrapper] pandaids: 6668051300
[2025-06-04 18:05:38] 2025-06-04 22:05:38,582 [wrapper] cleanup supervisor_pilot  3397 5722
[2025-06-04 18:05:38] 2025-06-04 22:05:38,585 [wrapper] Test setup, not cleaning
[2025-06-04 18:05:38] 2025-06-04 22:05:38,587 [wrapper] apfmon messages muted
[2025-06-04 18:05:38] 2025-06-04 22:05:38,589 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:05:38] 2025-06-04 22:05:38,591 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:05:38]  *** Error codes and diagnostics ***
[2025-06-04 18:05:38]     "exeErrorCode": 0,
[2025-06-04 18:05:38]     "exeErrorDiag": "",
[2025-06-04 18:05:38]     "pilotErrorCode": 0,
[2025-06-04 18:05:38]     "pilotErrorDiag": "",
[2025-06-04 18:05:38]  *** Listing of results directory ***
[2025-06-04 18:05:38] total 423172
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas    495897 May 28 01:33 pilot3.tar.gz
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas      5111 May 28 01:35 queuedata.json
[2025-06-04 18:05:38] -rwx------ 1 boincer umatlas     37140 May 28 01:36 runpilot2-wrapper.sh
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas       100 Jun  4 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:05:38] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 15:29 run_atlas
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas       105 Jun  4 15:29 job.xml
[2025-06-04 18:05:38] -rw-r--r-- 2 boincer umatlas 225340949 Jun  4 15:29 EVNT.44871834._003102.pool.root.1
[2025-06-04 18:05:38] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:29 start_atlas.sh
[2025-06-04 18:05:38] drwxrwx--x 2 boincer umatlas      4096 Jun  4 15:29 shared
[2025-06-04 18:05:38] -rw-r--r-- 2 boincer umatlas    508874 Jun  4 15:29 input.tar.gz
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas         0 Jun  4 15:29 boinc_lockfile
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas      2558 Jun  4 15:29 pandaJob.out
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas    991007 Jun  4 15:29 agis_schedconf.cvmfs.json
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas   1598969 Jun  4 15:29 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:05:38] drwx------ 4 boincer umatlas      4096 Jun  4 15:29 pilot3
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas      6130 Jun  4 18:02 init_data.xml
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas 201694012 Jun  4 18:04 HITS.44871837._079363.pool.root.1
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas       529 Jun  4 18:04 boinc_task_state.xml
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas        95 Jun  4 18:04 pilot_heartbeat.json
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas      1052 Jun  4 18:05 memory_monitor_summary.json
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas    352570 Jun  4 18:05 log.44871837._079363.job.log.tgz.1
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas      7741 Jun  4 18:05 heartbeat.json
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas        27 Jun  4 18:05 wrapper_checkpoint.txt
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 18:05 boinc_mmap_file
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas      4425 Jun  4 18:05 pilotlog.txt
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas    874108 Jun  4 18:05 log.44871837._079363.job.log.1
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas       357 Jun  4 18:05 output.list
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas       620 Jun  4 18:05 runtime_log
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas   1249280 Jun  4 18:05 result.tar.gz
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas       658 Jun  4 18:05 XfcKDmhdOe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnMbKDmkPaSwn.diag
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 18:05 runtime_log.err
[2025-06-04 18:05:38] -rw-r--r-- 1 boincer umatlas     20996 Jun  4 18:05 stderr.txt
[2025-06-04 18:05:38] HITS file was successfully produced:
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas 201694012 Jun  4 18:04 shared/HITS.pool.root.1
[2025-06-04 18:05:38]  *** Contents of shared directory: ***
[2025-06-04 18:05:38] total 418772
[2025-06-04 18:05:38] -rw-r--r-- 2 boincer umatlas 225340949 Jun  4 15:29 ATLAS.root_0
[2025-06-04 18:05:38] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:29 start_atlas.sh
[2025-06-04 18:05:38] -rw-r--r-- 2 boincer umatlas    508874 Jun  4 15:29 input.tar.gz
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas 201694012 Jun  4 18:04 HITS.pool.root.1
[2025-06-04 18:05:38] -rw------- 1 boincer umatlas   1249280 Jun  4 18:05 result.tar.gz
18:05:40 (48784): run_atlas exited; CPU time 68498.694984
18:05:40 (48784): called boinc_finish(0)

</stderr_txt>
]]>

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