Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:20:31 (671): wrapper (7.7.26015): starting
15:20:31 (671): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 15:20:31] Arguments: --nthreads 12
[2025-06-04 15:20:31] Threads: 12
[2025-06-04 15:20:31] Checking for CVMFS
[2025-06-04 15:20:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:20:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:20:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:20:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:20:32] 2.11.2.0 2981 36048 87936 146792 2 1 18976693 20275201 1 130560 0 16973586 99.983 6848496 8119 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 15:20:32] CVMFS is ok
[2025-06-04 15:20:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:20:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 15:20:32] Further information can be found at the LHC@home message board.
[2025-06-04 15:20:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:20:32] Checking for apptainer binary...
[2025-06-04 15:20:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:20:32] Running /usr/bin/apptainer --version
[2025-06-04 15:20:32] apptainer version 1.3.2-1.el7
[2025-06-04 15:20:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:20:33] c-205-30.aglt2.org
[2025-06-04 15:20:33] apptainer works
[2025-06-04 15:20:33] Set ATHENA_PROC_NUMBER=12
[2025-06-04 15:20:33] Set ATHENA_CORE_NUMBER=12
[2025-06-04 15:20:33] Starting ATLAS job with PandaID=6668533056
[2025-06-04 15:20:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:51:20]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:51:20]  filetype=log
[2025-06-04 16:51:20]  guid=355c80ce-afed-4301-bde8-9929722e3682
[2025-06-04 16:51:20]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 16:51:20]  is_altstaged=None
[2025-06-04 16:51:20]  is_tar=False
[2025-06-04 16:51:20]  lfn=log.44871837._085948.job.log.tgz.1
[2025-06-04 16:51:20]  mtime=0
[2025-06-04 16:51:20]  protocol_id=None
[2025-06-04 16:51:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 16:51:20]  replicas=None
[2025-06-04 16:51:20]  scope=mc23_13p6TeV
[2025-06-04 16:51:20]  status=None
[2025-06-04 16:51:20]  status_code=0
[2025-06-04 16:51:20]  storage_token=
[2025-06-04 16:51:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668533056/log.44871837._085948.job.log.tgz.1
[2025-06-04 16:51:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/89/log.44871837._085948.job.log.tgz.1
[2025-06-04 16:51:20]  workdir=None
[2025-06-04 16:51:20] ]
[2025-06-04 16:51:20] 2025-06-04 20:50:56,971 | INFO     | transferring file log.44871837._085948.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668533056/log.44871837._085948.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 16:51:20] 2025-06-04 20:50:56,971 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668533056/log.44871837._085948.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._085948.job
[2025-06-04 16:51:20] 2025-06-04 20:50:56,992 | INFO     | adding to output.list: log.44871837._085948.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/89/log.44871837._085948.job.log.tg
[2025-06-04 16:51:20] 2025-06-04 20:50:56,993 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 16:51:20] 2025-06-04 20:50:56,994 | INFO     | summary of transferred files:
[2025-06-04 16:51:20] 2025-06-04 20:50:56,994 | INFO     |  -- lfn=log.44871837._085948.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 16:51:20] 2025-06-04 20:50:56,994 | INFO     | stage-out finished correctly
[2025-06-04 16:51:20] 2025-06-04 20:50:57,243 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 16:51:20] 2025-06-04 20:50:57,325 | INFO     | job 6668533056 has state=finished
[2025-06-04 16:51:20] 2025-06-04 20:50:57,326 | INFO     | preparing for final server update for job 6668533056 in state='finished'
[2025-06-04 16:51:20] 2025-06-04 20:50:57,326 | INFO     | this job has now completed (state=finished)
[2025-06-04 16:51:20] 2025-06-04 20:50:57,327 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 16:51:20] 2025-06-04 20:50:57,327 | INFO     | log transfer has been attempted: DONE
[2025-06-04 16:51:20] 2025-06-04 20:50:57,327 | INFO     | job 6668533056 has finished - writing final server update
[2025-06-04 16:51:20] 2025-06-04 20:50:57,327 | INFO     | total number of processed events: 400 (read)
[2025-06-04 16:51:20] 2025-06-04 20:50:57,329 | INFO     | executing command: lscpu
[2025-06-04 16:51:20] 2025-06-04 20:50:57,363 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 16:51:20] 2025-06-04 20:50:59,586 | WARNING  | process 10912 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 16:51:20] 2025-06-04 20:50:59,586 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668533056/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:51:20] 2025-06-04 20:50:59,676 | INFO     | number of running child processes to parent process 10912: 1
[2025-06-04 16:51:20] 2025-06-04 20:50:59,677 | INFO     | maximum number of monitored processes: 6
[2025-06-04 16:51:20] 2025-06-04 20:51:01,871 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 16:51:20] 2025-06-04 20:51:01,871 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668533056/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:51:20] 2025-06-04 20:51:01,872 | INFO     | extracted standard info from prmon json
[2025-06-04 16:51:20] 2025-06-04 20:51:01,872 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:51:20] 2025-06-04 20:51:01,872 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:51:20] 2025-06-04 20:51:01,873 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:51:20] 2025-06-04 20:51:01,873 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:51:20] 2025-06-04 20:51:01,876 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:51:20] 2025-06-04 20:51:01,876 | INFO     | sum of square deviations: 170944600.5
[2025-06-04 16:51:20] 2025-06-04 20:51:01,876 | INFO     | sum of deviations: -12860239356.000002
[2025-06-04 16:51:20] 2025-06-04 20:51:01,877 | INFO     | mean x: 1749067653.5
[2025-06-04 16:51:20] 2025-06-04 20:51:01,877 | INFO     | mean y: 2852362.8536585364
[2025-06-04 16:51:20] 2025-06-04 20:51:01,877 | INFO     | -- intersect: 131586000400.61385
[2025-06-04 16:51:20] 2025-06-04 20:51:01,877 | INFO     | intersect: 131586000400.61385
[2025-06-04 16:51:20] 2025-06-04 20:51:01,878 | INFO     | chi2: 0.0754089858293865
[2025-06-04 16:51:20] 2025-06-04 20:51:01,878 | INFO     | -- intersect: 131586000400.61385
[2025-06-04 16:51:20] 2025-06-04 20:51:01,878 | INFO     | current memory leak: -75.23 B/s (using 82 data points, chi2=0.08)
[2025-06-04 16:51:20] 2025-06-04 20:51:01,878 | INFO     | ..............................
[2025-06-04 16:51:20] 2025-06-04 20:51:01,879 | INFO     | . Timing measurements:
[2025-06-04 16:51:20] 2025-06-04 20:51:01,879 | INFO     | . get job = 0 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,879 | INFO     | . initial setup = 2 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,879 | INFO     | . payload setup = 9 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,879 | INFO     | . stage-in = 0 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,879 | INFO     | . payload execution = 5379 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,880 | INFO     | . stage-out = 0 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,880 | INFO     | . log creation = 0 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,880 | INFO     | ..............................
[2025-06-04 16:51:20] 2025-06-04 20:51:01,963 | INFO     | 
[2025-06-04 16:51:20] 2025-06-04 20:51:01,963 | INFO     | job summary report
[2025-06-04 16:51:20] 2025-06-04 20:51:01,963 | INFO     | --------------------------------------------------
[2025-06-04 16:51:20] 2025-06-04 20:51:01,963 | INFO     | PanDA job id: 6668533056
[2025-06-04 16:51:20] 2025-06-04 20:51:01,963 | INFO     | task id: 44871837
[2025-06-04 16:51:20] 2025-06-04 20:51:01,964 | INFO     | errors: (none)
[2025-06-04 16:51:20] 2025-06-04 20:51:01,964 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:51:20] 2025-06-04 20:51:01,964 | INFO     | pilot state: finished 
[2025-06-04 16:51:20] 2025-06-04 20:51:01,964 | INFO     | transexitcode: 0
[2025-06-04 16:51:20] 2025-06-04 20:51:01,964 | INFO     | exeerrorcode: 0
[2025-06-04 16:51:20] 2025-06-04 20:51:01,964 | INFO     | exeerrordiag: 
[2025-06-04 16:51:20] 2025-06-04 20:51:01,965 | INFO     | exitcode: 0
[2025-06-04 16:51:20] 2025-06-04 20:51:01,965 | INFO     | exitmsg: OK
[2025-06-04 16:51:20] 2025-06-04 20:51:01,965 | INFO     | cpuconsumptiontime: 59892 s
[2025-06-04 16:51:20] 2025-06-04 20:51:01,965 | INFO     | nevents: 400
[2025-06-04 16:51:20] 2025-06-04 20:51:01,965 | INFO     | neventsw: 0
[2025-06-04 16:51:20] 2025-06-04 20:51:01,965 | INFO     | pid: 10912
[2025-06-04 16:51:20] 2025-06-04 20:51:01,966 | INFO     | pgrp: 10912
[2025-06-04 16:51:20] 2025-06-04 20:51:01,966 | INFO     | corecount: 12
[2025-06-04 16:51:20] 2025-06-04 20:51:01,966 | INFO     | event service: False
[2025-06-04 16:51:20] 2025-06-04 20:51:01,966 | INFO     | sizes: {0: 2397165, 1: 2397420, 6: 2397626, 12: 2397654, 5393: 2424042, 5394: 2433167, 5399: 2433281}
[2025-06-04 16:51:20] 2025-06-04 20:51:01,966 | INFO     | --------------------------------------------------
[2025-06-04 16:51:20] 2025-06-04 20:51:01,966 | INFO     | 
[2025-06-04 16:51:20] 2025-06-04 20:51:01,967 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 16:51:20] 2025-06-04 20:51:01,988 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,989 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,989 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,989 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,989 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,989 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,990 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,990 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,990 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,991 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,991 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,991 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:51:20] 2025-06-04 20:51:01,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,992 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:51:20] 2025-06-04 20:51:01,992 | INFO     | job 6668533056 has completed (purged errors)
[2025-06-04 16:51:20] 2025-06-04 20:51:01,992 | INFO     | overall cleanup function is called
[2025-06-04 16:51:20] 2025-06-04 20:51:03,000 | INFO     | --- collectZombieJob: --- 10, [10912]
[2025-06-04 16:51:20] 2025-06-04 20:51:03,000 | INFO     | zombie collector waiting for pid 10912
[2025-06-04 16:51:20] 2025-06-04 20:51:03,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:51:20] 2025-06-04 20:51:03,011 | INFO     | collected zombie processes
[2025-06-04 16:51:20] 2025-06-04 20:51:03,011 | INFO     | will attempt to kill all subprocesses of pid=10912
[2025-06-04 16:51:20] 2025-06-04 20:51:03,102 | INFO     | process IDs to be killed: [10912] (in reverse order)
[2025-06-04 16:51:20] 2025-06-04 20:51:03,149 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:51:20] 2025-06-04 20:51:03,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:51:20] 2025-06-04 20:51:03,153 | INFO     | did not find any defunct processes belonging to 10912
[2025-06-04 16:51:20] 2025-06-04 20:51:03,157 | INFO     | did not find any defunct processes belonging to 10912
[2025-06-04 16:51:20] 2025-06-04 20:51:03,157 | INFO     | ready for new job
[2025-06-04 16:51:20] 2025-06-04 20:51:03,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:51:20] 2025-06-04 20:51:03,159 | INFO     | **************************************
[2025-06-04 16:51:20] 2025-06-04 20:51:03,159 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:51:20] 2025-06-04 20:51:03,159 | INFO     | **************************************
[2025-06-04 16:51:20] 2025-06-04 20:51:03,159 | INFO     | 
[2025-06-04 16:51:20] 2025-06-04 20:51:03,160 | INFO     | architecture information:
[2025-06-04 16:51:20] 2025-06-04 20:51:03,160 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:51:20] 2025-06-04 20:51:03,174 | INFO     | cat /etc/os-release:
[2025-06-04 16:51:20] NAME="CentOS Linux"
[2025-06-04 16:51:20] VERSION="7 (Core)"
[2025-06-04 16:51:20] ID="centos"
[2025-06-04 16:51:20] ID_LIKE="rhel fedora"
[2025-06-04 16:51:20] VERSION_ID="7"
[2025-06-04 16:51:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:51:20] ANSI_COLOR="0;31"
[2025-06-04 16:51:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:51:20] HOME_URL="https://www.centos.org/"
[2025-06-04 16:51:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:51:20] 
[2025-06-04 16:51:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:51:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:51:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:51:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:51:20] 
[2025-06-04 16:51:20] 2025-06-04 20:51:03,175 | INFO     | **************************************
[2025-06-04 16:51:20] 2025-06-04 20:51:03,678 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 16:51:20] 2025-06-04 20:51:03,694 | INFO     | sufficient remaining disk space (29373759488 B)
[2025-06-04 16:51:20] 2025-06-04 20:51:03,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:51:20] 2025-06-04 20:51:03,694 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:51:20] 2025-06-04 20:51:03,694 | INFO     | update_server=False
[2025-06-04 16:51:20] 2025-06-04 20:51:03,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:51:20] 2025-06-04 20:51:03,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:51:20] 2025-06-04 20:51:03,695 | INFO     | aborting loop
[2025-06-04 16:51:20] 2025-06-04 20:51:03,695 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:51:20] 2025-06-04 20:51:03,695 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:51:20] 2025-06-04 20:51:03,738 | INFO     | all job control threads have been joined
[2025-06-04 16:51:20] 2025-06-04 20:51:03,850 | INFO     | all payload control threads have been joined
[2025-06-04 16:51:20] 2025-06-04 20:51:04,658 | INFO     | all data control threads have been joined
[2025-06-04 16:51:20] 2025-06-04 20:51:04,698 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:04,700 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:04,700 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:04,742 | INFO     | [job] control thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:04,749 | INFO     | PID=4454 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 16:51:20] 2025-06-04 20:51:04,749 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:51:20] 2025-06-04 20:51:04,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:51:20] 2025-06-04 20:51:04,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:51:20] 2025-06-04 20:51:04,766 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:04,856 | INFO     | [payload] control thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:05,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:51:20] 2025-06-04 20:51:05,241 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:05,618 | INFO     | [job] validate thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:05,636 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:05,659 | INFO     | [data] control thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:05,670 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:05,957 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:06,259 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:07,098 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:07,701 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:13,988 | INFO     | job.realtimelogging is not enabled
[2025-06-04 16:51:20] 2025-06-04 20:51:14,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:51:20] 2025-06-04 20:51:15,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646676223808)>', '<ExcThread(monitor, started 140645943469824)>']
[2025-06-04 16:51:20] 2025-06-04 20:51:15,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:51:20] 2025-06-04 20:51:15,801 | INFO     | [monitor] control thread has ended
[2025-06-04 16:51:20] 2025-06-04 20:51:20,306 | INFO     | all workflow threads have been joined
[2025-06-04 16:51:20] 2025-06-04 20:51:20,306 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:51:20] 2025-06-04 20:51:20,306 | INFO     | traces error code: 0
[2025-06-04 16:51:20] 2025-06-04 20:51:20,307 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:51:20] 2025-06-04 20:51:20,401 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:51:20] 2025-06-04 20:51:20,405 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:51:20] 2025-06-04 20:51:20,408 [wrapper] pilotpid: 4454
[2025-06-04 16:51:20] 2025-06-04 20:51:20,412 [wrapper] Pilot exit status: 0
[2025-06-04 16:51:20] 2025-06-04 20:51:20,426 [wrapper] pandaids: 6668533056
[2025-06-04 16:51:20] 2025-06-04 20:51:20,463 [wrapper] cleanup supervisor_pilot  4031 4455
[2025-06-04 16:51:20] 2025-06-04 20:51:20,467 [wrapper] Test setup, not cleaning
[2025-06-04 16:51:20] 2025-06-04 20:51:20,470 [wrapper] apfmon messages muted
[2025-06-04 16:51:20] 2025-06-04 20:51:20,474 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:51:20] 2025-06-04 20:51:20,478 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:51:20]  *** Error codes and diagnostics ***
[2025-06-04 16:51:20]     "exeErrorCode": 0,
[2025-06-04 16:51:20]     "exeErrorDiag": "",
[2025-06-04 16:51:20]     "pilotErrorCode": 0,
[2025-06-04 16:51:20]     "pilotErrorDiag": "",
[2025-06-04 16:51:20]  *** Listing of results directory ***
[2025-06-04 16:51:20] total 420664
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas    495897 May 28 10:07 pilot3.tar.gz
[2025-06-04 16:51:20] -rwx------ 1 boincer umatlas     37140 May 28 10:48 runpilot2-wrapper.sh
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas      5111 May 28 10:48 queuedata.json
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas       100 Jun  4 15:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:51:20] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 15:20 run_atlas
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas       105 Jun  4 15:20 job.xml
[2025-06-04 16:51:20] -rw-r--r-- 2 boincer umatlas 226274650 Jun  4 15:20 EVNT.44871834._003352.pool.root.1
[2025-06-04 16:51:20] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:20 start_atlas.sh
[2025-06-04 16:51:20] drwxrwx--x 2 boincer umatlas      4096 Jun  4 15:20 shared
[2025-06-04 16:51:20] -rw-r--r-- 2 boincer umatlas    508883 Jun  4 15:20 input.tar.gz
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas         0 Jun  4 15:20 boinc_lockfile
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 15:20 pandaJob.out
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas    991007 Jun  4 15:20 agis_schedconf.cvmfs.json
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas   1598969 Jun  4 15:20 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:51:20] drwx------ 4 boincer umatlas      4096 Jun  4 15:20 pilot3
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas      5868 Jun  4 16:46 init_data.xml
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas 198910605 Jun  4 16:50 HITS.44871837._085948.pool.root.1
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas       530 Jun  4 16:50 boinc_task_state.xml
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas      1044 Jun  4 16:50 memory_monitor_summary.json
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas    366642 Jun  4 16:50 log.44871837._085948.job.log.tgz.1
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas        95 Jun  4 16:50 pilot_heartbeat.json
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas      7752 Jun  4 16:51 heartbeat.json
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas        27 Jun  4 16:51 wrapper_checkpoint.txt
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 16:51 boinc_mmap_file
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas      4741 Jun  4 16:51 pilotlog.txt
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas    507500 Jun  4 16:51 log.44871837._085948.job.log.1
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas       357 Jun  4 16:51 output.list
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas       620 Jun  4 16:51 runtime_log
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas    890880 Jun  4 16:51 result.tar.gz
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas      8661 Jun  4 16:51 runtime_log.err
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas       659 Jun  4 16:51 4yFODmpFXe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyNcKDmYzNq2m.diag
[2025-06-04 16:51:20] -rw-r--r-- 1 boincer umatlas     21250 Jun  4 16:51 stderr.txt
[2025-06-04 16:51:20] HITS file was successfully produced:
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas 198910605 Jun  4 16:50 shared/HITS.pool.root.1
[2025-06-04 16:51:20]  *** Contents of shared directory: ***
[2025-06-04 16:51:20] total 416612
[2025-06-04 16:51:20] -rw-r--r-- 2 boincer umatlas 226274650 Jun  4 15:20 ATLAS.root_0
[2025-06-04 16:51:20] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:20 start_atlas.sh
[2025-06-04 16:51:20] -rw-r--r-- 2 boincer umatlas    508883 Jun  4 15:20 input.tar.gz
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas 198910605 Jun  4 16:50 HITS.pool.root.1
[2025-06-04 16:51:20] -rw------- 1 boincer umatlas    890880 Jun  4 16:51 result.tar.gz
16:51:22 (671): run_atlas exited; CPU time 59863.059314
16:51:22 (671): called boinc_finish(0)

</stderr_txt>
]]>

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