Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:20:26 (13765): wrapper (7.7.26015): starting
15:20:26 (13765): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 15:20:26] Arguments: --nthreads 12
[2025-06-04 15:20:26] Threads: 12
[2025-06-04 15:20:26] Checking for CVMFS
[2025-06-04 15:20:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:20:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:20:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:20:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:20:26] 2.11.2.0 2947 36048 85548 146792 1 1 18885917 20275201 1 130560 0 16374407 99.982 6728427 7216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 15:20:26] CVMFS is ok
[2025-06-04 15:20:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:20:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 15:20:26] Further information can be found at the LHC@home message board.
[2025-06-04 15:20:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:20:26] Checking for apptainer binary...
[2025-06-04 15:20:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:20:26] Running /usr/bin/apptainer --version
[2025-06-04 15:20:26] apptainer version 1.3.2-1.el7
[2025-06-04 15:20:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:20:28] c-205-18.aglt2.org
[2025-06-04 15:20:28] apptainer works
[2025-06-04 15:20:28] Set ATHENA_PROC_NUMBER=12
[2025-06-04 15:20:28] Set ATHENA_CORE_NUMBER=12
[2025-06-04 15:20:28] Starting ATLAS job with PandaID=6668327153
[2025-06-04 15:20:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:55:20]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:55:20]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 16:55:20]  is_altstaged=None
[2025-06-04 16:55:20]  is_tar=False
[2025-06-04 16:55:20]  lfn=log.44871837._083241.job.log.tgz.1
[2025-06-04 16:55:20]  mtime=0
[2025-06-04 16:55:20]  protocol_id=None
[2025-06-04 16:55:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 16:55:20]  replicas=None
[2025-06-04 16:55:20]  scope=mc23_13p6TeV
[2025-06-04 16:55:20]  status=None
[2025-06-04 16:55:20]  status_code=0
[2025-06-04 16:55:20]  storage_token=
[2025-06-04 16:55:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668327153/log.44871837._083241.job.log.tgz.1
[2025-06-04 16:55:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/71/log.44871837._083241.job.log.tgz.1
[2025-06-04 16:55:20]  workdir=None
[2025-06-04 16:55:20] ]
[2025-06-04 16:55:20] 2025-06-04 20:54:54,739 | INFO     | transferring file log.44871837._083241.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668327153/log.44871837._083241.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 16:55:20] 2025-06-04 20:54:54,739 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668327153/log.44871837._083241.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._083241.job
[2025-06-04 16:55:20] 2025-06-04 20:54:54,762 | INFO     | adding to output.list: log.44871837._083241.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/71/log.44871837._083241.job.log.tg
[2025-06-04 16:55:20] 2025-06-04 20:54:54,763 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 16:55:20] 2025-06-04 20:54:54,763 | INFO     | summary of transferred files:
[2025-06-04 16:55:20] 2025-06-04 20:54:54,763 | INFO     |  -- lfn=log.44871837._083241.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 16:55:20] 2025-06-04 20:54:54,764 | INFO     | stage-out finished correctly
[2025-06-04 16:55:20] 2025-06-04 20:54:54,896 | INFO     | monitor loop #422: job 0:6668327153 is in state 'finished'
[2025-06-04 16:55:20] 2025-06-04 20:54:54,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:55:20] 2025-06-04 20:54:55,763 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 16:55:20] 2025-06-04 20:54:56,750 | INFO     | job 6668327153 has state=finished
[2025-06-04 16:55:20] 2025-06-04 20:54:56,750 | INFO     | preparing for final server update for job 6668327153 in state='finished'
[2025-06-04 16:55:20] 2025-06-04 20:54:56,750 | INFO     | this job has now completed (state=finished)
[2025-06-04 16:55:20] 2025-06-04 20:54:56,751 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 16:55:20] 2025-06-04 20:54:56,751 | INFO     | log transfer has been attempted: DONE
[2025-06-04 16:55:20] 2025-06-04 20:54:56,751 | INFO     | job 6668327153 has finished - writing final server update
[2025-06-04 16:55:20] 2025-06-04 20:54:56,751 | INFO     | total number of processed events: 400 (read)
[2025-06-04 16:55:20] 2025-06-04 20:54:56,753 | INFO     | executing command: lscpu
[2025-06-04 16:55:20] 2025-06-04 20:54:56,781 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 16:55:20] 2025-06-04 20:54:57,400 | INFO     | monitor loop #423: job 0:6668327153 is in state 'finished'
[2025-06-04 16:55:20] 2025-06-04 20:54:57,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:55:20] 2025-06-04 20:54:59,903 | INFO     | monitor loop #424: job 0:6668327153 is in state 'finished'
[2025-06-04 16:55:20] 2025-06-04 20:54:59,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:55:20] 2025-06-04 20:55:01,423 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 16:55:20] 2025-06-04 20:55:01,424 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668327153/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:55:20] 2025-06-04 20:55:01,425 | INFO     | extracted standard info from prmon json
[2025-06-04 16:55:20] 2025-06-04 20:55:01,425 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:55:20] 2025-06-04 20:55:01,425 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:55:20] 2025-06-04 20:55:01,425 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:55:20] 2025-06-04 20:55:01,426 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:55:20] 2025-06-04 20:55:01,429 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:55:20] 2025-06-04 20:55:01,429 | INFO     | sum of square deviations: 197203697.5
[2025-06-04 16:55:20] 2025-06-04 20:55:01,429 | INFO     | sum of deviations: -12718043354.000002
[2025-06-04 16:55:20] 2025-06-04 20:55:01,429 | INFO     | mean x: 1749067770.5
[2025-06-04 16:55:20] 2025-06-04 20:55:01,430 | INFO     | mean y: 2838260.302325581
[2025-06-04 16:55:20] 2025-06-04 20:55:01,430 | INFO     | -- intersect: 112803561655.9837
[2025-06-04 16:55:20] 2025-06-04 20:55:01,430 | INFO     | intersect: 112803561655.9837
[2025-06-04 16:55:20] 2025-06-04 20:55:01,430 | INFO     | chi2: 0.11192709612012845
[2025-06-04 16:55:20] 2025-06-04 20:55:01,430 | INFO     | -- intersect: 112803561655.9837
[2025-06-04 16:55:20] 2025-06-04 20:55:01,431 | INFO     | current memory leak: -64.49 B/s (using 86 data points, chi2=0.11)
[2025-06-04 16:55:20] 2025-06-04 20:55:01,431 | INFO     | ..............................
[2025-06-04 16:55:20] 2025-06-04 20:55:01,431 | INFO     | . Timing measurements:
[2025-06-04 16:55:20] 2025-06-04 20:55:01,431 | INFO     | . get job = 0 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,431 | INFO     | . initial setup = 2 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,431 | INFO     | . payload setup = 9 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,432 | INFO     | . stage-in = 0 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,432 | INFO     | . payload execution = 5621 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,432 | INFO     | . stage-out = 0 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,432 | INFO     | . log creation = 0 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,432 | INFO     | ..............................
[2025-06-04 16:55:20] 2025-06-04 20:55:01,893 | INFO     | 
[2025-06-04 16:55:20] 2025-06-04 20:55:01,893 | INFO     | job summary report
[2025-06-04 16:55:20] 2025-06-04 20:55:01,893 | INFO     | --------------------------------------------------
[2025-06-04 16:55:20] 2025-06-04 20:55:01,893 | INFO     | PanDA job id: 6668327153
[2025-06-04 16:55:20] 2025-06-04 20:55:01,893 | INFO     | task id: 44871837
[2025-06-04 16:55:20] 2025-06-04 20:55:01,894 | INFO     | errors: (none)
[2025-06-04 16:55:20] 2025-06-04 20:55:01,894 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:55:20] 2025-06-04 20:55:01,894 | INFO     | pilot state: finished 
[2025-06-04 16:55:20] 2025-06-04 20:55:01,894 | INFO     | transexitcode: 0
[2025-06-04 16:55:20] 2025-06-04 20:55:01,894 | INFO     | exeerrorcode: 0
[2025-06-04 16:55:20] 2025-06-04 20:55:01,894 | INFO     | exeerrordiag: 
[2025-06-04 16:55:20] 2025-06-04 20:55:01,895 | INFO     | exitcode: 0
[2025-06-04 16:55:20] 2025-06-04 20:55:01,895 | INFO     | exitmsg: OK
[2025-06-04 16:55:20] 2025-06-04 20:55:01,895 | INFO     | cpuconsumptiontime: 62600 s
[2025-06-04 16:55:20] 2025-06-04 20:55:01,895 | INFO     | nevents: 400
[2025-06-04 16:55:20] 2025-06-04 20:55:01,895 | INFO     | neventsw: 0
[2025-06-04 16:55:20] 2025-06-04 20:55:01,895 | INFO     | pid: 23859
[2025-06-04 16:55:20] 2025-06-04 20:55:01,895 | INFO     | pgrp: 23859
[2025-06-04 16:55:20] 2025-06-04 20:55:01,896 | INFO     | corecount: 12
[2025-06-04 16:55:20] 2025-06-04 20:55:01,896 | INFO     | event service: False
[2025-06-04 16:55:20] 2025-06-04 20:55:01,896 | INFO     | sizes: {0: 2396564, 1: 2397420, 6: 2397626, 12: 2397654, 5634: 2424155, 5635: 2424154, 5636: 2433279, 5637: 2433335, 5643: 2433505}
[2025-06-04 16:55:20] 2025-06-04 20:55:01,896 | INFO     | --------------------------------------------------
[2025-06-04 16:55:20] 2025-06-04 20:55:01,896 | INFO     | 
[2025-06-04 16:55:20] 2025-06-04 20:55:01,896 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 16:55:20] 2025-06-04 20:55:01,920 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,920 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,920 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,921 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,921 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,921 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,921 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:55:20] 2025-06-04 20:55:01,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:55:20] 2025-06-04 20:55:01,923 | INFO     | job 6668327153 has completed (purged errors)
[2025-06-04 16:55:20] 2025-06-04 20:55:01,923 | INFO     | overall cleanup function is called
[2025-06-04 16:55:20] 2025-06-04 20:55:02,931 | INFO     | --- collectZombieJob: --- 10, [23859]
[2025-06-04 16:55:20] 2025-06-04 20:55:02,932 | INFO     | zombie collector waiting for pid 23859
[2025-06-04 16:55:20] 2025-06-04 20:55:02,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:55:20] 2025-06-04 20:55:02,932 | INFO     | collected zombie processes
[2025-06-04 16:55:20] 2025-06-04 20:55:02,932 | INFO     | will attempt to kill all subprocesses of pid=23859
[2025-06-04 16:55:20] 2025-06-04 20:55:03,023 | INFO     | process IDs to be killed: [23859] (in reverse order)
[2025-06-04 16:55:20] 2025-06-04 20:55:03,073 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:55:20] 2025-06-04 20:55:03,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:55:20] 2025-06-04 20:55:03,077 | INFO     | did not find any defunct processes belonging to 23859
[2025-06-04 16:55:20] 2025-06-04 20:55:03,080 | INFO     | did not find any defunct processes belonging to 23859
[2025-06-04 16:55:20] 2025-06-04 20:55:03,080 | INFO     | ready for new job
[2025-06-04 16:55:20] 2025-06-04 20:55:03,080 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:55:20] 2025-06-04 20:55:03,081 | INFO     | **************************************
[2025-06-04 16:55:20] 2025-06-04 20:55:03,081 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:55:20] 2025-06-04 20:55:03,081 | INFO     | **************************************
[2025-06-04 16:55:20] 2025-06-04 20:55:03,082 | INFO     | 
[2025-06-04 16:55:20] 2025-06-04 20:55:03,082 | INFO     | architecture information:
[2025-06-04 16:55:20] 2025-06-04 20:55:03,083 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:55:20] 2025-06-04 20:55:03,098 | INFO     | cat /etc/os-release:
[2025-06-04 16:55:20] NAME="CentOS Linux"
[2025-06-04 16:55:20] VERSION="7 (Core)"
[2025-06-04 16:55:20] ID="centos"
[2025-06-04 16:55:20] ID_LIKE="rhel fedora"
[2025-06-04 16:55:20] VERSION_ID="7"
[2025-06-04 16:55:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:55:20] ANSI_COLOR="0;31"
[2025-06-04 16:55:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:55:20] HOME_URL="https://www.centos.org/"
[2025-06-04 16:55:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:55:20] 
[2025-06-04 16:55:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:55:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:55:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:55:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:55:20] 
[2025-06-04 16:55:20] 2025-06-04 20:55:03,098 | INFO     | **************************************
[2025-06-04 16:55:20] 2025-06-04 20:55:03,601 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 16:55:20] 2025-06-04 20:55:03,617 | INFO     | sufficient remaining disk space (29382148096 B)
[2025-06-04 16:55:20] 2025-06-04 20:55:03,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:55:20] 2025-06-04 20:55:03,618 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:55:20] 2025-06-04 20:55:03,618 | INFO     | update_server=False
[2025-06-04 16:55:20] 2025-06-04 20:55:03,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:55:20] 2025-06-04 20:55:03,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:55:20] 2025-06-04 20:55:03,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:55:20] 2025-06-04 20:55:03,619 | INFO     | aborting loop
[2025-06-04 16:55:20] 2025-06-04 20:55:03,753 | INFO     | all data control threads have been joined
[2025-06-04 16:55:20] 2025-06-04 20:55:04,004 | INFO     | PID=17378 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 16:55:20] 2025-06-04 20:55:04,004 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:55:20] 2025-06-04 20:55:04,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:55:20] 2025-06-04 20:55:04,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:55:20] 2025-06-04 20:55:04,540 | INFO     | all payload control threads have been joined
[2025-06-04 16:55:20] 2025-06-04 20:55:04,623 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:04,624 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:04,625 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:04,696 | INFO     | all job control threads have been joined
[2025-06-04 16:55:20] 2025-06-04 20:55:04,759 | INFO     | [data] control thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:04,826 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:04,859 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:05,226 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:05,423 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:05,545 | INFO     | [payload] control thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:05,557 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:05,624 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:05,701 | INFO     | [job] control thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:06,065 | INFO     | [job] validate thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:06,351 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:55:20] 2025-06-04 20:55:06,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:55:20] 2025-06-04 20:55:07,532 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:10,354 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:14,086 | INFO     | job.realtimelogging is not enabled
[2025-06-04 16:55:20] 2025-06-04 20:55:15,091 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:55:20] 2025-06-04 20:55:15,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139997986449216)>', '<ExcThread(monitor, started 139996723926784)>']
[2025-06-04 16:55:20] 2025-06-04 20:55:16,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:55:20] 2025-06-04 20:55:16,062 | INFO     | [monitor] control thread has ended
[2025-06-04 16:55:20] 2025-06-04 20:55:20,274 | INFO     | all workflow threads have been joined
[2025-06-04 16:55:20] 2025-06-04 20:55:20,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:55:20] 2025-06-04 20:55:20,275 | INFO     | traces error code: 0
[2025-06-04 16:55:20] 2025-06-04 20:55:20,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:55:20] 2025-06-04 20:55:20,352 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:55:20] 2025-06-04 20:55:20,356 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:55:20] 2025-06-04 20:55:20,360 [wrapper] pilotpid: 17378
[2025-06-04 16:55:20] 2025-06-04 20:55:20,364 [wrapper] Pilot exit status: 0
[2025-06-04 16:55:20] 2025-06-04 20:55:20,379 [wrapper] pandaids: 6668327153
[2025-06-04 16:55:20] 2025-06-04 20:55:20,420 [wrapper] cleanup supervisor_pilot 12686 17379
[2025-06-04 16:55:20] 2025-06-04 20:55:20,424 [wrapper] Test setup, not cleaning
[2025-06-04 16:55:20] 2025-06-04 20:55:20,428 [wrapper] apfmon messages muted
[2025-06-04 16:55:20] 2025-06-04 20:55:20,432 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:55:20] 2025-06-04 20:55:20,436 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:55:20]  *** Error codes and diagnostics ***
[2025-06-04 16:55:20]     "exeErrorCode": 0,
[2025-06-04 16:55:20]     "exeErrorDiag": "",
[2025-06-04 16:55:20]     "pilotErrorCode": 0,
[2025-06-04 16:55:20]     "pilotErrorDiag": "",
[2025-06-04 16:55:20]  *** Listing of results directory ***
[2025-06-04 16:55:20] total 420004
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas    495897 May 28 06:54 pilot3.tar.gz
[2025-06-04 16:55:20] -rwx------ 1 boincer umatlas     37140 May 28 06:58 runpilot2-wrapper.sh
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas      5111 May 28 06:58 queuedata.json
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas       100 Jun  4 15:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:55:20] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 15:20 run_atlas
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas       105 Jun  4 15:20 job.xml
[2025-06-04 16:55:20] -rw-r--r-- 2 boincer umatlas 222666443 Jun  4 15:20 EVNT.44871834._003249.pool.root.1
[2025-06-04 16:55:20] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:20 start_atlas.sh
[2025-06-04 16:55:20] drwxrwx--x 2 boincer umatlas      4096 Jun  4 15:20 shared
[2025-06-04 16:55:20] -rw-r--r-- 2 boincer umatlas    508880 Jun  4 15:20 input.tar.gz
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas         0 Jun  4 15:20 boinc_lockfile
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 15:20 pandaJob.out
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas    991007 Jun  4 15:20 agis_schedconf.cvmfs.json
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas   1598969 Jun  4 15:20 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:55:20] drwx------ 4 boincer umatlas      4096 Jun  4 15:20 pilot3
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas      5868 Jun  4 16:48 init_data.xml
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas 201762631 Jun  4 16:54 HITS.44871837._083241.pool.root.1
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas       529 Jun  4 16:54 boinc_task_state.xml
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas      1044 Jun  4 16:54 memory_monitor_summary.json
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas    378252 Jun  4 16:54 log.44871837._083241.job.log.tgz.1
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas        95 Jun  4 16:54 pilot_heartbeat.json
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas      7749 Jun  4 16:55 heartbeat.json
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 16:55 boinc_mmap_file
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas        27 Jun  4 16:55 wrapper_checkpoint.txt
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas      4742 Jun  4 16:55 pilotlog.txt
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas    531097 Jun  4 16:55 log.44871837._083241.job.log.1
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas       357 Jun  4 16:55 output.list
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas       620 Jun  4 16:55 runtime_log
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas    931840 Jun  4 16:55 result.tar.gz
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas      8661 Jun  4 16:55 runtime_log.err
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas       659 Jun  4 16:55 R0QMDmBfTe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9ybKDmtA4jEn.diag
[2025-06-04 16:55:20] -rw-r--r-- 1 boincer umatlas     21437 Jun  4 16:55 stderr.txt
[2025-06-04 16:55:20] HITS file was successfully produced:
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas 201762631 Jun  4 16:54 shared/HITS.pool.root.1
[2025-06-04 16:55:20]  *** Contents of shared directory: ***
[2025-06-04 16:55:20] total 415916
[2025-06-04 16:55:20] -rw-r--r-- 2 boincer umatlas 222666443 Jun  4 15:20 ATLAS.root_0
[2025-06-04 16:55:20] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:20 start_atlas.sh
[2025-06-04 16:55:20] -rw-r--r-- 2 boincer umatlas    508880 Jun  4 15:20 input.tar.gz
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas 201762631 Jun  4 16:54 HITS.pool.root.1
[2025-06-04 16:55:20] -rw------- 1 boincer umatlas    931840 Jun  4 16:55 result.tar.gz
16:55:22 (13765): run_atlas exited; CPU time 62581.201573
16:55:22 (13765): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN