Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:18:10 (100996): wrapper (7.7.26015): starting
15:18:10 (100996): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:18:10] Arguments: --nthreads 8
[2025-06-04 15:18:10] Threads: 8
[2025-06-04 15:18:10] Checking for CVMFS
[2025-06-04 15:18:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:18:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:18:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:18:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:18:11] 2.12.6.0 1685548 23705 440416 146792 2 20 29257900 32947201 9619 16776704 0 124783894 99.688 97905865 27469 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 15:18:11] CVMFS is ok
[2025-06-04 15:18:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:18:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 15:18:11] Further information can be found at the LHC@home message board.
[2025-06-04 15:18:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:18:11] Checking for apptainer binary...
[2025-06-04 15:18:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:18:11] Running /usr/bin/apptainer --version
[2025-06-04 15:18:11] apptainer version 1.4.1-1.el9
[2025-06-04 15:18:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:18:11] c6-6-8-2.aglt2.org
[2025-06-04 15:18:11] apptainer works
[2025-06-04 15:18:11] Set ATHENA_PROC_NUMBER=8
[2025-06-04 15:18:11] Set ATHENA_CORE_NUMBER=8
[2025-06-04 15:18:11] Starting ATLAS job with PandaID=6667366513
[2025-06-04 15:18:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:31:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:31:35]  guid=e88dc3d2-2383-461a-ae80-88ee6944ff9a
[2025-06-04 16:31:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 16:31:35]  is_altstaged=None
[2025-06-04 16:31:35]  is_tar=False
[2025-06-04 16:31:35]  lfn=log.44871837._071553.job.log.tgz.1
[2025-06-04 16:31:35]  mtime=0
[2025-06-04 16:31:35]  protocol_id=None
[2025-06-04 16:31:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 16:31:35]  replicas=None
[2025-06-04 16:31:35]  scope=mc23_13p6TeV
[2025-06-04 16:31:35]  status=None
[2025-06-04 16:31:35]  status_code=0
[2025-06-04 16:31:35]  storage_token=
[2025-06-04 16:31:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667366513/log.44871837._071553.job.log.tgz.1
[2025-06-04 16:31:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/d7/log.44871837._071553.job.log.tgz.1
[2025-06-04 16:31:35]  workdir=None
[2025-06-04 16:31:35] ]
[2025-06-04 16:31:35] 2025-06-04 20:31:02,726 | INFO     | transferring file log.44871837._071553.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667366513/log.44871837._071553.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 16:31:35] 2025-06-04 20:31:02,726 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667366513/log.44871837._071553.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._071553.job
[2025-06-04 16:31:35] 2025-06-04 20:31:02,739 | INFO     | adding to output.list: log.44871837._071553.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/d7/log.44871837._071553.job.log.tg
[2025-06-04 16:31:35] 2025-06-04 20:31:02,739 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 16:31:35] 2025-06-04 20:31:02,739 | INFO     | summary of transferred files:
[2025-06-04 16:31:35] 2025-06-04 20:31:02,739 | INFO     |  -- lfn=log.44871837._071553.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 16:31:35] 2025-06-04 20:31:02,740 | INFO     | stage-out finished correctly
[2025-06-04 16:31:35] 2025-06-04 20:31:04,009 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 16:31:35] 2025-06-04 20:31:06,586 | INFO     | job 6667366513 has state=finished
[2025-06-04 16:31:35] 2025-06-04 20:31:06,586 | INFO     | preparing for final server update for job 6667366513 in state='finished'
[2025-06-04 16:31:35] 2025-06-04 20:31:06,651 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 16:31:35] 2025-06-04 20:31:06,651 | INFO     | this job has now completed (state=finished)
[2025-06-04 16:31:35] 2025-06-04 20:31:06,652 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 16:31:35] 2025-06-04 20:31:06,652 | INFO     | log transfer has been attempted: DONE
[2025-06-04 16:31:35] 2025-06-04 20:31:06,652 | INFO     | job 6667366513 has finished - writing final server update
[2025-06-04 16:31:35] 2025-06-04 20:31:06,652 | INFO     | total number of processed events: 400 (read)
[2025-06-04 16:31:35] 2025-06-04 20:31:06,669 | INFO     | executing command: lscpu
[2025-06-04 16:31:35] 2025-06-04 20:31:06,736 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 16:31:35] 2025-06-04 20:31:08,270 | WARNING  | process 116792 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 16:31:35] 2025-06-04 20:31:08,270 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667366513/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:31:35] 2025-06-04 20:31:08,484 | INFO     | number of running child processes to parent process 116792: 1
[2025-06-04 16:31:35] 2025-06-04 20:31:08,484 | INFO     | maximum number of monitored processes: 6
[2025-06-04 16:31:35] 2025-06-04 20:31:09,130 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 16:31:35] 2025-06-04 20:31:09,130 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667366513/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:31:35] 2025-06-04 20:31:09,130 | INFO     | extracted standard info from prmon json
[2025-06-04 16:31:35] 2025-06-04 20:31:09,131 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:31:35] 2025-06-04 20:31:09,131 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:31:35] 2025-06-04 20:31:09,131 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:31:35] 2025-06-04 20:31:09,131 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:31:35] 2025-06-04 20:31:09,132 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | sum of square deviations: 85136480.0
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | sum of deviations: -3500963666.9999995
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | mean x: 1749066977.0
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | mean y: 2391340.0615384616
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | -- intersect: 71927140139.00793
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | intersect: 71927140139.00793
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | chi2: 0.05917099388190798
[2025-06-04 16:31:35] 2025-06-04 20:31:09,133 | INFO     | -- intersect: 71927140139.00793
[2025-06-04 16:31:35] 2025-06-04 20:31:09,134 | INFO     | current memory leak: -41.12 B/s (using 65 data points, chi2=0.06)
[2025-06-04 16:31:35] 2025-06-04 20:31:09,134 | INFO     | ..............................
[2025-06-04 16:31:35] 2025-06-04 20:31:09,134 | INFO     | . Timing measurements:
[2025-06-04 16:31:35] 2025-06-04 20:31:09,134 | INFO     | . get job = 0 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,134 | INFO     | . initial setup = 2 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,134 | INFO     | . payload setup = 4 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,134 | INFO     | . stage-in = 0 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,135 | INFO     | . payload execution = 4342 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,135 | INFO     | . stage-out = 0 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,135 | INFO     | . log creation = 0 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,135 | INFO     | ..............................
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | 
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | job summary report
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | --------------------------------------------------
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | PanDA job id: 6667366513
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | task id: 44871837
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | errors: (none)
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | pilot state: finished 
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | transexitcode: 0
[2025-06-04 16:31:35] 2025-06-04 20:31:09,614 | INFO     | exeerrorcode: 0
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | exeerrordiag: 
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | exitcode: 0
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | exitmsg: OK
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | cpuconsumptiontime: 33049 s
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | nevents: 400
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | neventsw: 0
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | pid: 116792
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | pgrp: 116792
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | corecount: 8
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | event service: False
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | sizes: {0: 2397341, 3: 2397547, 11: 2397575, 4349: 2423585, 4350: 2432526, 4351: 2432582, 4356: 2432880}
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | --------------------------------------------------
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | 
[2025-06-04 16:31:35] 2025-06-04 20:31:09,615 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 16:31:35] 2025-06-04 20:31:09,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:31:35] 2025-06-04 20:31:09,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:31:35] 2025-06-04 20:31:09,631 | INFO     | job 6667366513 has completed (purged errors)
[2025-06-04 16:31:35] 2025-06-04 20:31:09,631 | INFO     | overall cleanup function is called
[2025-06-04 16:31:35] 2025-06-04 20:31:10,637 | INFO     | --- collectZombieJob: --- 10, [116792]
[2025-06-04 16:31:35] 2025-06-04 20:31:10,638 | INFO     | zombie collector waiting for pid 116792
[2025-06-04 16:31:35] 2025-06-04 20:31:10,638 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:31:35] 2025-06-04 20:31:10,638 | INFO     | collected zombie processes
[2025-06-04 16:31:35] 2025-06-04 20:31:10,638 | INFO     | will attempt to kill all subprocesses of pid=116792
[2025-06-04 16:31:35] 2025-06-04 20:31:10,807 | INFO     | process IDs to be killed: [116792] (in reverse order)
[2025-06-04 16:31:35] 2025-06-04 20:31:10,860 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:31:35] 2025-06-04 20:31:10,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:31:35] 2025-06-04 20:31:10,867 | INFO     | did not find any defunct processes belonging to 116792
[2025-06-04 16:31:35] 2025-06-04 20:31:10,874 | INFO     | did not find any defunct processes belonging to 116792
[2025-06-04 16:31:35] 2025-06-04 20:31:10,874 | INFO     | ready for new job
[2025-06-04 16:31:35] 2025-06-04 20:31:10,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:31:35] 2025-06-04 20:31:10,875 | INFO     | **************************************
[2025-06-04 16:31:35] 2025-06-04 20:31:10,875 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:31:35] 2025-06-04 20:31:10,875 | INFO     | **************************************
[2025-06-04 16:31:35] 2025-06-04 20:31:10,876 | INFO     | 
[2025-06-04 16:31:35] 2025-06-04 20:31:10,878 | INFO     | architecture information:
[2025-06-04 16:31:35] 2025-06-04 20:31:10,879 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:31:35] 2025-06-04 20:31:10,888 | INFO     | cat /etc/os-release:
[2025-06-04 16:31:35] NAME="CentOS Linux"
[2025-06-04 16:31:35] VERSION="7 (Core)"
[2025-06-04 16:31:35] ID="centos"
[2025-06-04 16:31:35] ID_LIKE="rhel fedora"
[2025-06-04 16:31:35] VERSION_ID="7"
[2025-06-04 16:31:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:31:35] ANSI_COLOR="0;31"
[2025-06-04 16:31:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:31:35] HOME_URL="https://www.centos.org/"
[2025-06-04 16:31:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:31:35] 
[2025-06-04 16:31:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:31:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:31:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:31:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:31:35] 
[2025-06-04 16:31:35] 2025-06-04 20:31:10,888 | INFO     | **************************************
[2025-06-04 16:31:35] 2025-06-04 20:31:11,390 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 16:31:35] 2025-06-04 20:31:11,401 | INFO     | sufficient remaining disk space (75456577536 B)
[2025-06-04 16:31:35] 2025-06-04 20:31:11,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:31:35] 2025-06-04 20:31:11,401 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:31:35] 2025-06-04 20:31:11,401 | INFO     | update_server=False
[2025-06-04 16:31:35] 2025-06-04 20:31:11,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:31:35] 2025-06-04 20:31:11,402 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:31:35] 2025-06-04 20:31:11,402 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 16:31:35] 2025-06-04 20:31:11,402 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:31:35] 2025-06-04 20:31:11,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:31:35] 2025-06-04 20:31:11,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:31:35] 2025-06-04 20:31:11,456 | INFO     | all data control threads have been joined
[2025-06-04 16:31:35] 2025-06-04 20:31:11,992 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:31:35] 2025-06-04 20:31:11,993 | INFO     | aborting loop
[2025-06-04 16:31:35] 2025-06-04 20:31:12,398 | INFO     | all payload control threads have been joined
[2025-06-04 16:31:35] 2025-06-04 20:31:12,406 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:12,461 | INFO     | [data] control thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:12,859 | INFO     | all job control threads have been joined
[2025-06-04 16:31:35] 2025-06-04 20:31:12,904 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,000 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,403 | INFO     | [payload] control thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,407 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,452 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,546 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,672 | INFO     | [job] validate thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,850 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,857 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,865 | INFO     | [job] control thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:13,902 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:14,231 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:31:35] 2025-06-04 20:31:14,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:31:35] 2025-06-04 20:31:15,236 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:18,612 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:21,466 | INFO     | job.realtimelogging is not enabled
[2025-06-04 16:31:35] 2025-06-04 20:31:22,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:31:35] 2025-06-04 20:31:24,105 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140532113590080)>', '<ExcThread(monitor, started 140531757721344)>']
[2025-06-04 16:31:35] 2025-06-04 20:31:24,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:31:35] 2025-06-04 20:31:24,467 | INFO     | [monitor] control thread has ended
[2025-06-04 16:31:35] 2025-06-04 20:31:29,129 | INFO     | all workflow threads have been joined
[2025-06-04 16:31:35] 2025-06-04 20:31:29,130 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:31:35] 2025-06-04 20:31:29,130 | INFO     | traces error code: 0
[2025-06-04 16:31:35] 2025-06-04 20:31:29,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:31:35] 2025-06-04 20:31:29,223 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:31:35] 2025-06-04 20:31:29,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:31:35] 2025-06-04 20:31:29,226 [wrapper] pilotpid: 104655
[2025-06-04 16:31:35] 2025-06-04 20:31:29,228 [wrapper] Pilot exit status: 0
[2025-06-04 16:31:35] 2025-06-04 20:31:29,234 [wrapper] pandaids: 6667366513
[2025-06-04 16:31:35] 2025-06-04 20:31:29,271 [wrapper] cleanup supervisor_pilot  323841 104656
[2025-06-04 16:31:35] 2025-06-04 20:31:29,274 [wrapper] Test setup, not cleaning
[2025-06-04 16:31:35] 2025-06-04 20:31:29,276 [wrapper] apfmon messages muted
[2025-06-04 16:31:35] 2025-06-04 20:31:29,278 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:31:35] 2025-06-04 20:31:29,279 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:31:35]  *** Error codes and diagnostics ***
[2025-06-04 16:31:35]     "exeErrorCode": 0,
[2025-06-04 16:31:35]     "exeErrorDiag": "",
[2025-06-04 16:31:35]     "pilotErrorCode": 0,
[2025-06-04 16:31:35]     "pilotErrorDiag": "",
[2025-06-04 16:31:35]  *** Listing of results directory ***
[2025-06-04 16:31:35] total 415596
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas    495897 May 27 13:43 pilot3.tar.gz
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas      5111 May 27 14:21 queuedata.json
[2025-06-04 16:31:35] -rwx------ 1 boincer umatlas     37140 May 27 14:22 runpilot2-wrapper.sh
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas       100 Jun  4 15:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:31:35] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 15:18 run_atlas
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas       105 Jun  4 15:18 job.xml
[2025-06-04 16:31:35] -rw-r--r-- 2 boincer umatlas 221873635 Jun  4 15:18 EVNT.44871834._002811.pool.root.1
[2025-06-04 16:31:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:18 start_atlas.sh
[2025-06-04 16:31:35] drwxrwx--x 2 boincer umatlas      4096 Jun  4 15:18 shared
[2025-06-04 16:31:35] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 15:18 input.tar.gz
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas         0 Jun  4 15:18 boinc_lockfile
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas      2558 Jun  4 15:18 pandaJob.out
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas    991007 Jun  4 15:18 agis_schedconf.cvmfs.json
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas   1598969 Jun  4 15:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:31:35] drwx------ 4 boincer umatlas      4096 Jun  4 15:18 pilot3
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas      6856 Jun  4 16:28 init_data.xml
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas       529 Jun  4 16:30 boinc_task_state.xml
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas 198385210 Jun  4 16:30 HITS.44871837._071553.pool.root.1
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas        95 Jun  4 16:30 pilot_heartbeat.json
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas      1039 Jun  4 16:30 memory_monitor_summary.json
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas    304272 Jun  4 16:31 log.44871837._071553.job.log.tgz.1
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas      7717 Jun  4 16:31 heartbeat.json
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas      4548 Jun  4 16:31 pilotlog.txt
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas    431507 Jun  4 16:31 log.44871837._071553.job.log.1
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas       357 Jun  4 16:31 output.list
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas       620 Jun  4 16:31 runtime_log
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas    757760 Jun  4 16:31 result.tar.gz
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 16:31 runtime_log.err
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas       651 Jun  4 16:31 iR9KDmV7De7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg5ZKDmRYgSUm.diag
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas        27 Jun  4 16:31 wrapper_checkpoint.txt
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 16:31 boinc_mmap_file
[2025-06-04 16:31:35] -rw-r--r-- 1 boincer umatlas     21286 Jun  4 16:31 stderr.txt
[2025-06-04 16:31:35] HITS file was successfully produced:
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas 198385210 Jun  4 16:30 shared/HITS.pool.root.1
[2025-06-04 16:31:35]  *** Contents of shared directory: ***
[2025-06-04 16:31:35] total 411676
[2025-06-04 16:31:35] -rw-r--r-- 2 boincer umatlas 221873635 Jun  4 15:18 ATLAS.root_0
[2025-06-04 16:31:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:18 start_atlas.sh
[2025-06-04 16:31:35] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 15:18 input.tar.gz
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas 198385210 Jun  4 16:30 HITS.pool.root.1
[2025-06-04 16:31:35] -rw------- 1 boincer umatlas    757760 Jun  4 16:31 result.tar.gz
16:31:37 (100996): run_atlas exited; CPU time 33206.385490
16:31:37 (100996): called boinc_finish(0)

</stderr_txt>
]]>

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