Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:02:09 (25079): wrapper (7.7.26015): starting
01:02:09 (25079): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 01:02:09] Arguments: --nthreads 8
[2025-06-05 01:02:09] Threads: 8
[2025-06-05 01:02:09] Checking for CVMFS
[2025-06-05 01:02:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:02:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:02:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:02:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:02:10] 2.11.2.0 6362 34008 89408 146797 3 60 22134954 25165824 3908 130560 0 16148997 99.780 20354411 2099 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 01:02:10] CVMFS is ok
[2025-06-05 01:02:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:02:11] Checking for apptainer binary...
[2025-06-05 01:02:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:02:11] Running /usr/bin/apptainer --version
[2025-06-05 01:02:11] apptainer version 1.3.2-1.el7
[2025-06-05 01:02:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:07:15] cg-vwn310.simple-grid.lan
[2025-06-05 01:07:15] apptainer works
[2025-06-05 01:07:16] Set ATHENA_PROC_NUMBER=8
[2025-06-05 01:07:16] Set ATHENA_CORE_NUMBER=8
[2025-06-05 01:07:16] Starting ATLAS job with PandaID=6668439101
[2025-06-05 01:07:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:47:37]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:47:37] 2025-06-05 04:39:10,550 | INFO     | extracted standard info from prmon json
[2025-06-05 06:47:37] 2025-06-05 04:39:10,550 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:47:37] 2025-06-05 04:39:10,550 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:47:37] 2025-06-05 04:39:10,550 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:47:37] 2025-06-05 04:39:10,550 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:47:37] 2025-06-05 04:39:10,557 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:47:37] 2025-06-05 04:39:10,558 | INFO     | sum of square deviations: 9877610318.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,561 | INFO     | sum of deviations: -49203064637.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,561 | INFO     | mean x: 1749088587.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,561 | INFO     | mean y: 2523167.5110410093
[2025-06-05 06:47:37] 2025-06-05 04:39:10,561 | INFO     | -- intersect: 8715209336.671982
[2025-06-05 06:47:37] 2025-06-05 04:39:10,561 | INFO     | intersect: 8715209336.671982
[2025-06-05 06:47:37] 2025-06-05 04:39:10,562 | INFO     | chi2: 2.6931128018727772
[2025-06-05 06:47:37] 2025-06-05 04:39:10,563 | INFO     | sum of square deviations: 9417545878.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,566 | INFO     | sum of deviations: -27293561931.5
[2025-06-05 06:47:37] 2025-06-05 04:39:10,566 | INFO     | mean x: 1749088434.5
[2025-06-05 06:47:37] 2025-06-05 04:39:10,566 | INFO     | mean y: 2530340.5993589745
[2025-06-05 06:47:37] 2025-06-05 04:39:10,566 | INFO     | -- intersect: 5071669809.536505
[2025-06-05 06:47:37] 2025-06-05 04:39:10,566 | INFO     | intersect: 5071669809.536505
[2025-06-05 06:47:37] 2025-06-05 04:39:10,567 | INFO     | chi2: 1.9263244714745207
[2025-06-05 06:47:37] 2025-06-05 04:39:10,567 | INFO     | current chi2=1.9263244714745207 (change=28.472195069773377 %)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,568 | INFO     | sum of square deviations: 8971993338.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,570 | INFO     | sum of deviations: -26821440017.999992
[2025-06-05 06:47:37] 2025-06-05 04:39:10,571 | INFO     | mean x: 1749088282.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,571 | INFO     | mean y: 2530502.1889250814
[2025-06-05 06:47:37] 2025-06-05 04:39:10,571 | INFO     | -- intersect: 5231364795.138514
[2025-06-05 06:47:37] 2025-06-05 04:39:10,571 | INFO     | intersect: 5231364795.138514
[2025-06-05 06:47:37] 2025-06-05 04:39:10,571 | INFO     | chi2: 1.9252796651185817
[2025-06-05 06:47:37] 2025-06-05 04:39:10,572 | INFO     | current chi2=1.9252796651185817 (change=0.05423833686436007 %)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,572 | INFO     | right removable region: 306
[2025-06-05 06:47:37] 2025-06-05 04:39:10,572 | INFO     | sum of square deviations: 9417545878.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,575 | INFO     | sum of deviations: -104106018318.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,575 | INFO     | mean x: 1749088739.5
[2025-06-05 06:47:37] 2025-06-05 04:39:10,575 | INFO     | mean y: 2541255.6346153845
[2025-06-05 06:47:37] 2025-06-05 04:39:10,576 | INFO     | -- intersect: 19337797670.95723
[2025-06-05 06:47:37] 2025-06-05 04:39:10,576 | INFO     | intersect: 19337797670.95723
[2025-06-05 06:47:37] 2025-06-05 04:39:10,576 | INFO     | chi2: 1.0770340498103241
[2025-06-05 06:47:37] 2025-06-05 04:39:10,576 | INFO     | current chi2=1.0770340498103241 (change=60.00783743401465 %)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,577 | INFO     | sum of square deviations: 8971993338.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,579 | INFO     | sum of deviations: -105154676821.00003
[2025-06-05 06:47:37] 2025-06-05 04:39:10,580 | INFO     | mean x: 1749088892.0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,580 | INFO     | mean y: 2541598.3094462543
[2025-06-05 06:47:37] 2025-06-05 04:39:10,580 | INFO     | -- intersect: 20502431671.841396
[2025-06-05 06:47:37] 2025-06-05 04:39:10,580 | INFO     | intersect: 20502431671.841396
[2025-06-05 06:47:37] 2025-06-05 04:39:10,581 | INFO     | chi2: 1.0563481428451993
[2025-06-05 06:47:37] 2025-06-05 04:39:10,581 | INFO     | current chi2=1.0563481428451993 (change=1.9206363038167484 %)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,581 | INFO     | left removable region: 20
[2025-06-05 06:47:37] 2025-06-05 04:39:10,581 | INFO     | sum of square deviations: 7253894147.5
[2025-06-05 06:47:37] 2025-06-05 04:39:10,584 | INFO     | sum of deviations: -64831963605.5
[2025-06-05 06:47:37] 2025-06-05 04:39:10,584 | INFO     | mean x: 1749088861.5
[2025-06-05 06:47:37] 2025-06-05 04:39:10,584 | INFO     | mean y: 2543444.178321678
[2025-06-05 06:47:37] 2025-06-05 04:39:10,584 | INFO     | -- intersect: 15635093782.762295
[2025-06-05 06:47:37] 2025-06-05 04:39:10,584 | INFO     | intersect: 15635093782.762295
[2025-06-05 06:47:37] 2025-06-05 04:39:10,585 | INFO     | chi2: 0.25263924612952837
[2025-06-05 06:47:37] 2025-06-05 04:39:10,585 | INFO     | -- intersect: 15635093782.762295
[2025-06-05 06:47:37] 2025-06-05 04:39:10,585 | INFO     | current memory leak: -8.94 B/s (using 286 data points, chi2=0.25)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,586 | INFO     | ..............................
[2025-06-05 06:47:37] 2025-06-05 04:39:10,586 | INFO     | . Timing measurements:
[2025-06-05 06:47:37] 2025-06-05 04:39:10,586 | INFO     | . get job = 0 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,586 | INFO     | . initial setup = 16 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,587 | INFO     | . payload setup = 105 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,587 | INFO     | . stage-in = 0 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,587 | INFO     | . payload execution = 19322 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,587 | INFO     | . stage-out = 4 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,587 | INFO     | . log creation = 1 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,587 | INFO     | ..............................
[2025-06-05 06:47:37] 2025-06-05 04:39:10,705 | INFO     | 
[2025-06-05 06:47:37] 2025-06-05 04:39:10,705 | INFO     | job summary report
[2025-06-05 06:47:37] 2025-06-05 04:39:10,705 | INFO     | --------------------------------------------------
[2025-06-05 06:47:37] 2025-06-05 04:39:10,705 | INFO     | PanDA job id: 6668439101
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | task id: 44871837
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | errors: (none)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | pilot state: finished 
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | transexitcode: 0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | exeerrorcode: 0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | exeerrordiag: 
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | exitcode: 0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,706 | INFO     | exitmsg: OK
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | cpuconsumptiontime: 72413 s
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | nevents: 400
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | neventsw: 0
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | pid: 8988
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | pgrp: 8988
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | corecount: 8
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | event service: False
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | sizes: {0: 2397170, 1: 2397369, 12: 2397369, 22: 2397397, 33: 2397425, 44: 2397481, 55: 2397637, 65: 2397665, 76: 2397693, 87: 2397749, 90: 2397983, 97: 2398291, 1
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | --------------------------------------------------
[2025-06-05 06:47:37] 2025-06-05 04:39:10,707 | INFO     | 
[2025-06-05 06:47:37] 2025-06-05 04:39:10,708 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 06:47:37] 2025-06-05 04:39:10,752 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,753 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,754 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:47:37] 2025-06-05 04:39:10,755 | INFO     | job 6668439101 has completed (purged errors)
[2025-06-05 06:47:37] 2025-06-05 04:39:10,755 | INFO     | overall cleanup function is called
[2025-06-05 06:47:37] 2025-06-05 04:39:11,764 | INFO     | --- collectZombieJob: --- 10, [8988]
[2025-06-05 06:47:37] 2025-06-05 04:39:11,764 | INFO     | zombie collector waiting for pid 8988
[2025-06-05 06:47:37] 2025-06-05 04:39:11,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:47:37] 2025-06-05 04:39:11,764 | INFO     | collected zombie processes
[2025-06-05 06:47:37] 2025-06-05 04:39:11,764 | INFO     | will attempt to kill all subprocesses of pid=8988
[2025-06-05 06:47:37] 2025-06-05 04:39:11,880 | INFO     | process IDs to be killed: [8988] (in reverse order)
[2025-06-05 06:47:37] 2025-06-05 04:39:12,849 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:47:37] 2025-06-05 04:39:12,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:47:37] 2025-06-05 04:39:12,854 | INFO     | did not find any defunct processes belonging to 8988
[2025-06-05 06:47:37] 2025-06-05 04:39:12,858 | INFO     | did not find any defunct processes belonging to 8988
[2025-06-05 06:47:37] 2025-06-05 04:39:12,858 | INFO     | ready for new job
[2025-06-05 06:47:37] 2025-06-05 04:39:12,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:47:37] 2025-06-05 04:39:12,861 | INFO     | **************************************
[2025-06-05 06:47:37] 2025-06-05 04:39:12,862 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:47:37] 2025-06-05 04:39:12,862 | INFO     | **************************************
[2025-06-05 06:47:37] 2025-06-05 04:39:12,862 | INFO     | 
[2025-06-05 06:47:37] 2025-06-05 04:39:12,862 | INFO     | pilot is running in a VM
[2025-06-05 06:47:37] 2025-06-05 04:39:12,863 | INFO     | architecture information:
[2025-06-05 06:47:37] 2025-06-05 04:39:12,877 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:47:37] 2025-06-05 04:39:13,212 | INFO     | cat /etc/os-release:
[2025-06-05 06:47:37] NAME="CentOS Linux"
[2025-06-05 06:47:37] VERSION="7 (Core)"
[2025-06-05 06:47:37] ID="centos"
[2025-06-05 06:47:37] ID_LIKE="rhel fedora"
[2025-06-05 06:47:37] VERSION_ID="7"
[2025-06-05 06:47:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:47:37] ANSI_COLOR="0;31"
[2025-06-05 06:47:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:47:37] HOME_URL="https://www.centos.org/"
[2025-06-05 06:47:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:47:37] 
[2025-06-05 06:47:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:47:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:47:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:47:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:47:37] 
[2025-06-05 06:47:37] 2025-06-05 04:39:13,213 | INFO     | **************************************
[2025-06-05 06:47:37] 2025-06-05 04:39:13,716 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 06:47:37] 2025-06-05 04:39:13,942 | INFO     | sufficient remaining disk space (497205379072 B)
[2025-06-05 06:47:37] 2025-06-05 04:39:13,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:47:37] 2025-06-05 04:39:13,943 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:47:37] 2025-06-05 04:39:13,943 | INFO     | update_server=False
[2025-06-05 06:47:37] 2025-06-05 04:39:13,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:47:37] 2025-06-05 04:39:13,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:47:37] 2025-06-05 04:39:13,944 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:47:37] 2025-06-05 04:39:13,944 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:47:37] 2025-06-05 04:39:13,944 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:47:37] 2025-06-05 04:39:13,944 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:47:37] 2025-06-05 04:39:13,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:47:37] 2025-06-05 04:39:13,944 | INFO     | aborting loop
[2025-06-05 06:47:37] 2025-06-05 04:39:13,944 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:47:37] 2025-06-05 04:39:14,485 | INFO     | all job control threads have been joined
[2025-06-05 06:47:37] 2025-06-05 04:39:14,873 | INFO     | all data control threads have been joined
[2025-06-05 06:47:37] 2025-06-05 04:39:14,948 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:14,949 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,029 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,432 | INFO     | all payload control threads have been joined
[2025-06-05 06:47:37] 2025-06-05 04:39:15,458 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,491 | INFO     | [job] control thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:47:37] 2025-06-05 04:39:15,795 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,800 | INFO     | [job] validate thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,832 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,879 | INFO     | [data] control thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,952 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,959 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,986 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:15,997 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:16,438 | INFO     | [payload] control thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:16,724 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:17,953 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:47:37] 2025-06-05 04:39:19,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622386464576)>', '<ExcThread(monitor, started 139621727987456)>']
[2025-06-05 06:47:37] 2025-06-05 04:39:19,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:47:37] 2025-06-05 04:39:19,983 | INFO     | [monitor] control thread has ended
[2025-06-05 06:47:37] 2025-06-05 04:39:24,685 | INFO     | all workflow threads have been joined
[2025-06-05 06:47:37] 2025-06-05 04:39:24,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:47:37] 2025-06-05 04:39:24,686 | INFO     | traces error code: 0
[2025-06-05 06:47:37] 2025-06-05 04:39:24,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:47:37] 2025-06-05 04:39:25,080 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:47:37] 2025-06-05 04:39:25,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:47:37] 2025-06-05 04:39:25,268 [wrapper] pilotpid: 1116
[2025-06-05 06:47:37] 2025-06-05 04:39:25,370 [wrapper] Pilot exit status: 0
[2025-06-05 06:47:37] 2025-06-05 04:39:25,718 [wrapper] pandaids: 6668439101
[2025-06-05 06:47:37] 2025-06-05 04:39:26,578 [wrapper] cleanup supervisor_pilot  3825 1117
[2025-06-05 06:47:37] 2025-06-05 04:39:26,672 [wrapper] Test setup, not cleaning
[2025-06-05 06:47:37] 2025-06-05 04:39:26,772 [wrapper] apfmon messages muted
[2025-06-05 06:47:37] 2025-06-05 04:39:26,859 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:47:37] 2025-06-05 04:39:26,936 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:47:37]  *** Error codes and diagnostics ***
[2025-06-05 06:47:37]     "exeErrorCode": 0,
[2025-06-05 06:47:37]     "exeErrorDiag": "",
[2025-06-05 06:47:37]     "pilotErrorCode": 0,
[2025-06-05 06:47:37]     "pilotErrorDiag": "",
[2025-06-05 06:47:37]  *** Listing of results directory ***
[2025-06-05 06:47:37] total 423048
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc    495897 May 28 13:04 pilot3.tar.gz
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc      5111 May 28 13:06 queuedata.json
[2025-06-05 06:47:37] -rwx------. 1 boinc boinc     37140 May 28 13:07 runpilot2-wrapper.sh
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc       100 Jun  5 01:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:47:37] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 01:02 run_atlas
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc       105 Jun  5 01:02 job.xml
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc      6391 Jun  5 01:02 init_data.xml
[2025-06-05 06:47:37] -rw-r--r--. 2 boinc boinc 227414299 Jun  5 01:02 EVNT.44871834._001734.pool.root.1
[2025-06-05 06:47:37] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:02 start_atlas.sh
[2025-06-05 06:47:37] drwxrwx--x. 2 boinc boinc        68 Jun  5 01:02 shared
[2025-06-05 06:47:37] -rw-r--r--. 2 boinc boinc    508883 Jun  5 01:02 input.tar.gz
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc         0 Jun  5 01:02 boinc_lockfile
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc      2558 Jun  5 01:07 pandaJob.out
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc    987032 Jun  5 01:10 agis_schedconf.cvmfs.json
[2025-06-05 06:47:37] drwx------. 4 boinc boinc      4096 Jun  5 01:10 pilot3
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc 197743047 Jun  5 06:36 HITS.44871837._083437.pool.root.1
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc       531 Jun  5 06:36 boinc_task_state.xml
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc      1018 Jun  5 06:37 memory_monitor_summary.json
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc   1598969 Jun  5 06:37 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc    436208 Jun  5 06:37 log.44871837._083437.job.log.tgz.1
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc        95 Jun  5 06:39 pilot_heartbeat.json
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc      7691 Jun  5 06:39 heartbeat.json
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc      4539 Jun  5 06:39 pilotlog.txt
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc   1672056 Jun  5 06:39 log.44871837._083437.job.log.1
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc       357 Jun  5 06:39 output.list
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc       620 Jun  5 06:39 runtime_log
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc   2129920 Jun  5 06:39 result.tar.gz
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc      8659 Jun  5 06:39 runtime_log.err
[2025-06-05 06:47:37] -rw-------. 1 boinc boinc       658 Jun  5 06:39 bJaMDm9nTe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmEPTKDmCS6g9m.diag
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:47 boinc_mmap_file
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:47 wrapper_checkpoint.txt
[2025-06-05 06:47:37] -rw-r--r--. 1 boinc boinc     20501 Jun  5 06:47 stderr.txt
[2025-06-05 06:47:38] HITS file was successfully produced:
[2025-06-05 06:47:38] -rw-------. 1 boinc boinc 197743047 Jun  5 06:36 shared/HITS.pool.root.1
[2025-06-05 06:47:38]  *** Contents of shared directory: ***
[2025-06-05 06:47:38] total 417796
[2025-06-05 06:47:38] -rw-r--r--. 2 boinc boinc 227414299 Jun  5 01:02 ATLAS.root_0
[2025-06-05 06:47:38] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:02 start_atlas.sh
[2025-06-05 06:47:38] -rw-r--r--. 2 boinc boinc    508883 Jun  5 01:02 input.tar.gz
[2025-06-05 06:47:38] -rw-------. 1 boinc boinc 197743047 Jun  5 06:36 HITS.pool.root.1
[2025-06-05 06:47:38] -rw-------. 1 boinc boinc   2129920 Jun  5 06:39 result.tar.gz
06:47:39 (25079): run_atlas exited; CPU time 72678.330072
06:47:39 (25079): called boinc_finish(0)

</stderr_txt>
]]>

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