Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:54:54 (3686): wrapper (7.7.26015): starting
00:54:54 (3686): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:54:54] Arguments: --nthreads 8
[2025-06-05 00:54:54] Threads: 8
[2025-06-05 00:54:54] Checking for CVMFS
[2025-06-05 00:54:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:54:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:54:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:54:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:54:56] 2.11.2.0 28641 33850 92608 146797 2 59 19833332 25165825 3906 130560 0 18648919 99.817 20398393 2028 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:54:56] CVMFS is ok
[2025-06-05 00:54:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:54:56] Checking for apptainer binary...
[2025-06-05 00:54:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:54:56] Running /usr/bin/apptainer --version
[2025-06-05 00:54:56] apptainer version 1.3.2-1.el7
[2025-06-05 00:54:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:25:32] cg-vwn402.simple-grid.lan
[2025-06-05 01:25:32] apptainer works
[2025-06-05 01:25:32] Set ATHENA_PROC_NUMBER=8
[2025-06-05 01:25:32] Set ATHENA_CORE_NUMBER=8
[2025-06-05 01:25:32] Starting ATLAS job with PandaID=6667034035
[2025-06-05 01:25:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 09:36:54]  *** The last 200 lines of the pilot log: ***
[2025-06-05 09:36:54] 2025-06-05 04:58:19,028 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 09:36:54] 2025-06-05 04:58:19,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 09:36:54] 2025-06-05 04:58:19,029 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 09:36:54] 2025-06-05 04:58:19,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 09:36:54] 2025-06-05 04:58:19,036 | INFO     | fitting pss+swap vs Time
[2025-06-05 09:36:54] 2025-06-05 04:58:19,037 | INFO     | sum of square deviations: 9691828230.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,040 | INFO     | sum of deviations: 94490715320.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,040 | INFO     | mean x: 1749089806.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,041 | INFO     | mean y: 2462851.434920635
[2025-06-05 09:36:54] 2025-06-05 04:58:19,041 | INFO     | -- intersect: -17050330801.704351
[2025-06-05 09:36:54] 2025-06-05 04:58:19,041 | INFO     | intersect: -17050330801.704351
[2025-06-05 09:36:54] 2025-06-05 04:58:19,041 | INFO     | chi2: 6.649426316336192
[2025-06-05 09:36:54] 2025-06-05 04:58:19,042 | INFO     | sum of square deviations: 9237596457.5
[2025-06-05 09:36:54] 2025-06-05 04:58:19,045 | INFO     | sum of deviations: 113641288584.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,045 | INFO     | mean x: 1749089653.5
[2025-06-05 09:36:54] 2025-06-05 04:58:19,046 | INFO     | mean y: 2469190.8838709677
[2025-06-05 09:36:54] 2025-06-05 04:58:19,046 | INFO     | -- intersect: -21514903102.566097
[2025-06-05 09:36:54] 2025-06-05 04:58:19,046 | INFO     | intersect: -21514903102.566097
[2025-06-05 09:36:54] 2025-06-05 04:58:19,046 | INFO     | chi2: 5.924065803009494
[2025-06-05 09:36:54] 2025-06-05 04:58:19,046 | INFO     | current chi2=5.924065803009494 (change=10.908617959186119 %)
[2025-06-05 09:36:54] 2025-06-05 04:58:19,047 | INFO     | right removable region: 309
[2025-06-05 09:36:54] 2025-06-05 04:58:19,047 | INFO     | sum of square deviations: 9237596457.5
[2025-06-05 09:36:54] 2025-06-05 04:58:19,050 | INFO     | sum of deviations: -15557648589.500002
[2025-06-05 09:36:54] 2025-06-05 04:58:19,051 | INFO     | mean x: 1749089958.5
[2025-06-05 09:36:54] 2025-06-05 04:58:19,051 | INFO     | mean y: 2499774.9967741934
[2025-06-05 09:36:54] 2025-06-05 04:58:19,051 | INFO     | -- intersect: 2948258127.9364023
[2025-06-05 09:36:54] 2025-06-05 04:58:19,051 | INFO     | intersect: 2948258127.9364023
[2025-06-05 09:36:54] 2025-06-05 04:58:19,051 | INFO     | chi2: 1.9531511211697479
[2025-06-05 09:36:54] 2025-06-05 04:58:19,052 | INFO     | current chi2=1.9531511211697479 (change=70.6267724725172 %)
[2025-06-05 09:36:54] 2025-06-05 04:58:19,052 | INFO     | sum of square deviations: 8797783560.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,055 | INFO     | sum of deviations: -57585350723.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,055 | INFO     | mean x: 1749090111.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,056 | INFO     | mean y: 2514260.019672131
[2025-06-05 09:36:54] 2025-06-05 04:58:19,056 | INFO     | -- intersect: 11451075912.071272
[2025-06-05 09:36:54] 2025-06-05 04:58:19,056 | INFO     | intersect: 11451075912.071272
[2025-06-05 09:36:54] 2025-06-05 04:58:19,056 | INFO     | chi2: 0.9718844091017659
[2025-06-05 09:36:54] 2025-06-05 04:58:19,056 | INFO     | current chi2=0.9718844091017659 (change=50.2401837437084 %)
[2025-06-05 09:36:54] 2025-06-05 04:58:19,057 | INFO     | sum of square deviations: 8372156975.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,060 | INFO     | sum of deviations: -54124402171.49999
[2025-06-05 09:36:54] 2025-06-05 04:58:19,060 | INFO     | mean x: 1749090263.5
[2025-06-05 09:36:54] 2025-06-05 04:58:19,060 | INFO     | mean y: 2513001.0566666666
[2025-06-05 09:36:54] 2025-06-05 04:58:19,060 | INFO     | -- intersect: 11310048817.527534
[2025-06-05 09:36:54] 2025-06-05 04:58:19,061 | INFO     | intersect: 11310048817.527534
[2025-06-05 09:36:54] 2025-06-05 04:58:19,061 | INFO     | chi2: 0.9575107443391466
[2025-06-05 09:36:54] 2025-06-05 04:58:19,061 | INFO     | current chi2=0.9575107443391466 (change=1.4789479724140928 %)
[2025-06-05 09:36:54] 2025-06-05 04:58:19,061 | INFO     | left removable region: 30
[2025-06-05 09:36:54] 2025-06-05 04:58:19,062 | INFO     | sum of square deviations: 6734191380.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,064 | INFO     | sum of deviations: -4221728808.9999995
[2025-06-05 09:36:54] 2025-06-05 04:58:19,065 | INFO     | mean x: 1749090538.0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,065 | INFO     | mean y: 2508829.709677419
[2025-06-05 09:36:54] 2025-06-05 04:58:19,065 | INFO     | -- intersect: 1099030371.368612
[2025-06-05 09:36:54] 2025-06-05 04:58:19,065 | INFO     | intersect: 1099030371.368612
[2025-06-05 09:36:54] 2025-06-05 04:58:19,065 | INFO     | chi2: 0.08170170646497985
[2025-06-05 09:36:54] 2025-06-05 04:58:19,066 | INFO     | -- intersect: 1099030371.368612
[2025-06-05 09:36:54] 2025-06-05 04:58:19,066 | INFO     | current memory leak: -0.63 B/s (using 279 data points, chi2=0.08)
[2025-06-05 09:36:54] 2025-06-05 04:58:19,067 | INFO     | ..............................
[2025-06-05 09:36:54] 2025-06-05 04:58:19,067 | INFO     | . Timing measurements:
[2025-06-05 09:36:54] 2025-06-05 04:58:19,067 | INFO     | . get job = 0 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,067 | INFO     | . initial setup = 10 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,067 | INFO     | . payload setup = 156 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,067 | INFO     | . stage-in = 0 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,068 | INFO     | . payload execution = 19327 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,068 | INFO     | . stage-out = 3 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,068 | INFO     | . log creation = 1 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,068 | INFO     | ..............................
[2025-06-05 09:36:54] 2025-06-05 04:58:19,691 | INFO     | 
[2025-06-05 09:36:54] 2025-06-05 04:58:19,691 | INFO     | job summary report
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | --------------------------------------------------
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | PanDA job id: 6667034035
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | task id: 44871837
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | errors: (none)
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | pilot state: finished 
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | transexitcode: 0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | exeerrorcode: 0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | exeerrordiag: 
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | exitcode: 0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,692 | INFO     | exitmsg: OK
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | cpuconsumptiontime: 72045 s
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | nevents: 400
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | neventsw: 0
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | pid: 3124
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | pgrp: 3124
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | corecount: 8
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | event service: False
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | sizes: {0: 2396558, 1: 2397243, 2: 2397442, 13: 2397442, 24: 2397498, 34: 2397526, 45: 2397682, 56: 2397710, 66: 2397738, 77: 2397766, 88: 2397822, 92: 2398336, 99
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | --------------------------------------------------
[2025-06-05 09:36:54] 2025-06-05 04:58:19,693 | INFO     | 
[2025-06-05 09:36:54] 2025-06-05 04:58:19,694 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 09:36:54] 2025-06-05 04:58:20,347 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,347 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,347 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,347 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,348 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,349 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,349 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,349 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 09:36:54] 2025-06-05 04:58:20,349 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,349 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 09:36:54] 2025-06-05 04:58:20,349 | INFO     | job 6667034035 has completed (purged errors)
[2025-06-05 09:36:54] 2025-06-05 04:58:20,349 | INFO     | overall cleanup function is called
[2025-06-05 09:36:54] 2025-06-05 04:58:21,358 | INFO     | --- collectZombieJob: --- 10, [3124]
[2025-06-05 09:36:54] 2025-06-05 04:58:21,358 | INFO     | zombie collector waiting for pid 3124
[2025-06-05 09:36:54] 2025-06-05 04:58:21,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 09:36:54] 2025-06-05 04:58:21,359 | INFO     | collected zombie processes
[2025-06-05 09:36:54] 2025-06-05 04:58:21,359 | INFO     | will attempt to kill all subprocesses of pid=3124
[2025-06-05 09:36:54] 2025-06-05 04:58:21,489 | INFO     | process IDs to be killed: [3124] (in reverse order)
[2025-06-05 09:36:54] 2025-06-05 04:58:22,028 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 09:36:54] 2025-06-05 04:58:22,029 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 09:36:54] 2025-06-05 04:58:22,033 | INFO     | did not find any defunct processes belonging to 3124
[2025-06-05 09:36:54] 2025-06-05 04:58:22,036 | INFO     | did not find any defunct processes belonging to 3124
[2025-06-05 09:36:54] 2025-06-05 04:58:22,037 | INFO     | ready for new job
[2025-06-05 09:36:54] 2025-06-05 04:58:22,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 09:36:54] 2025-06-05 04:58:22,040 | INFO     | **************************************
[2025-06-05 09:36:54] 2025-06-05 04:58:22,040 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 09:36:54] 2025-06-05 04:58:22,040 | INFO     | **************************************
[2025-06-05 09:36:54] 2025-06-05 04:58:22,040 | INFO     | 
[2025-06-05 09:36:54] 2025-06-05 04:58:22,046 | INFO     | pilot is running in a VM
[2025-06-05 09:36:54] 2025-06-05 04:58:22,046 | INFO     | architecture information:
[2025-06-05 09:36:54] 2025-06-05 04:58:22,058 | INFO     | executing command: cat /etc/os-release
[2025-06-05 09:36:54] 2025-06-05 04:58:22,293 | INFO     | cat /etc/os-release:
[2025-06-05 09:36:54] NAME="CentOS Linux"
[2025-06-05 09:36:54] VERSION="7 (Core)"
[2025-06-05 09:36:54] ID="centos"
[2025-06-05 09:36:54] ID_LIKE="rhel fedora"
[2025-06-05 09:36:54] VERSION_ID="7"
[2025-06-05 09:36:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 09:36:54] ANSI_COLOR="0;31"
[2025-06-05 09:36:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 09:36:54] HOME_URL="https://www.centos.org/"
[2025-06-05 09:36:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 09:36:54] 
[2025-06-05 09:36:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 09:36:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 09:36:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 09:36:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 09:36:54] 
[2025-06-05 09:36:54] 2025-06-05 04:58:22,294 | INFO     | **************************************
[2025-06-05 09:36:54] 2025-06-05 04:58:22,798 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 09:36:54] 2025-06-05 04:58:23,099 | INFO     | sufficient remaining disk space (496582524928 B)
[2025-06-05 09:36:54] 2025-06-05 04:58:23,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 09:36:54] 2025-06-05 04:58:23,099 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 09:36:54] 2025-06-05 04:58:23,100 | INFO     | update_server=False
[2025-06-05 09:36:54] 2025-06-05 04:58:23,100 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 09:36:54] 2025-06-05 04:58:23,101 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 09:36:54] 2025-06-05 04:58:23,102 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 09:36:54] 2025-06-05 04:58:23,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 09:36:54] 2025-06-05 04:58:23,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 09:36:54] 2025-06-05 04:58:23,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:36:54] 2025-06-05 04:58:23,102 | INFO     | aborting loop
[2025-06-05 09:36:54] 2025-06-05 04:58:23,345 | INFO     | all job control threads have been joined
[2025-06-05 09:36:54] 2025-06-05 04:58:24,090 | INFO     | all data control threads have been joined
[2025-06-05 09:36:54] 2025-06-05 04:58:24,106 | INFO     | [job] retrieve thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:24,108 | INFO     | [job] job monitor thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:24,157 | INFO     | all payload control threads have been joined
[2025-06-05 09:36:54] 2025-06-05 04:58:24,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:36:54] 2025-06-05 04:58:24,351 | INFO     | [job] control thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:24,382 | INFO     | [data] copytool_in thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:24,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 09:36:54] 2025-06-05 04:58:24,599 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:24,618 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,062 | INFO     | [job] validate thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,095 | INFO     | [data] control thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,143 | INFO     | [payload] failed_post thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,163 | INFO     | [payload] control thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,218 | INFO     | [job] queue monitor thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,302 | INFO     | [payload] validate_post thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,455 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:25,942 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 09:36:54] 2025-06-05 04:58:26,517 | INFO     | [data] copytool_out thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:29,951 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:33,817 | INFO     | job.realtimelogging is not enabled
[2025-06-05 09:36:54] 2025-06-05 04:58:34,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 09:36:54] 2025-06-05 04:58:36,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140266126796608)>', '<ExcThread(monitor, started 140265687860992)>']
[2025-06-05 09:36:54] 2025-06-05 04:58:37,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 09:36:54] 2025-06-05 04:58:37,186 | INFO     | [monitor] control thread has ended
[2025-06-05 09:36:54] 2025-06-05 04:58:41,270 | INFO     | all workflow threads have been joined
[2025-06-05 09:36:54] 2025-06-05 04:58:41,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 09:36:54] 2025-06-05 04:58:41,271 | INFO     | traces error code: 0
[2025-06-05 09:36:54] 2025-06-05 04:58:41,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 09:36:54] 2025-06-05 04:58:41,682 [wrapper] ==== pilot stdout END ====
[2025-06-05 09:36:54] 2025-06-05 04:58:41,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 09:36:54] 2025-06-05 04:58:41,881 [wrapper] pilotpid: 26869
[2025-06-05 09:36:54] 2025-06-05 04:58:41,943 [wrapper] Pilot exit status: 0
[2025-06-05 09:36:54] 2025-06-05 04:58:42,307 [wrapper] pandaids: 6667034035
[2025-06-05 09:36:54] 2025-06-05 04:58:43,158 [wrapper] cleanup supervisor_pilot 11254 26870
[2025-06-05 09:36:54] 2025-06-05 04:58:43,163 [wrapper] Test setup, not cleaning
[2025-06-05 09:36:54] 2025-06-05 04:58:43,177 [wrapper] apfmon messages muted
[2025-06-05 09:36:54] 2025-06-05 04:58:43,254 [wrapper] ==== wrapper stdout END ====
[2025-06-05 09:36:54] 2025-06-05 04:58:43,303 [wrapper] ==== wrapper stderr END ====
[2025-06-05 09:36:54]  *** Error codes and diagnostics ***
[2025-06-05 09:36:54]     "exeErrorCode": 0,
[2025-06-05 09:36:54]     "exeErrorDiag": "",
[2025-06-05 09:36:54]     "pilotErrorCode": 0,
[2025-06-05 09:36:54]     "pilotErrorDiag": "",
[2025-06-05 09:36:54]  *** Listing of results directory ***
[2025-06-05 09:36:54] total 417684
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc    495897 May 27 14:18 pilot3.tar.gz
[2025-06-05 09:36:54] -rwx------. 1 boinc boinc     37140 May 27 15:18 runpilot2-wrapper.sh
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc      5111 May 27 15:18 queuedata.json
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 09:36:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:54 run_atlas
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:54 job.xml
[2025-06-05 09:36:54] -rw-r--r--. 2 boinc boinc 226271923 Jun  5 00:54 EVNT.44871834._002673.pool.root.1
[2025-06-05 09:36:54] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:54 shared
[2025-06-05 09:36:54] -rw-r--r--. 2 boinc boinc    508875 Jun  5 00:54 input.tar.gz
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc      6390 Jun  5 00:54 init_data.xml
[2025-06-05 09:36:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:54 start_atlas.sh
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:54 boinc_lockfile
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc      2556 Jun  5 01:25 pandaJob.out
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc    987117 Jun  5 01:28 agis_schedconf.cvmfs.json
[2025-06-05 09:36:54] drwx------. 4 boinc boinc      4096 Jun  5 01:29 pilot3
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc 193434379 Jun  5 06:55 HITS.44871837._067925.pool.root.1
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc       531 Jun  5 06:55 boinc_task_state.xml
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc      1021 Jun  5 06:56 memory_monitor_summary.json
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc   1598969 Jun  5 06:56 agis_ddmendpoints.agis.ALL.json
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc    419580 Jun  5 06:56 log.44871837._067925.job.log.tgz.1
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc        95 Jun  5 06:57 pilot_heartbeat.json
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc      7693 Jun  5 06:58 heartbeat.json
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc      4611 Jun  5 06:58 pilotlog.txt
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc   1669501 Jun  5 06:58 log.44871837._067925.job.log.1
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc       357 Jun  5 06:58 output.list
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc       620 Jun  5 06:58 runtime_log
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc   2109440 Jun  5 06:58 result.tar.gz
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc      8659 Jun  5 06:58 runtime_log.err
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc       658 Jun  5 06:58 N4WKDm5M9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQWZKDmbl31hn.diag
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc      8192 Jun  5 09:36 boinc_mmap_file
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc        28 Jun  5 09:36 wrapper_checkpoint.txt
[2025-06-05 09:36:54] -rw-r--r--. 1 boinc boinc     20499 Jun  5 09:36 stderr.txt
[2025-06-05 09:36:54] HITS file was successfully produced:
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc 193434379 Jun  5 06:55 shared/HITS.pool.root.1
[2025-06-05 09:36:54]  *** Contents of shared directory: ***
[2025-06-05 09:36:54] total 412452
[2025-06-05 09:36:54] -rw-r--r--. 2 boinc boinc 226271923 Jun  5 00:54 ATLAS.root_0
[2025-06-05 09:36:54] -rw-r--r--. 2 boinc boinc    508875 Jun  5 00:54 input.tar.gz
[2025-06-05 09:36:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:54 start_atlas.sh
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc 193434379 Jun  5 06:55 HITS.pool.root.1
[2025-06-05 09:36:54] -rw-------. 1 boinc boinc   2109440 Jun  5 06:58 result.tar.gz
09:36:56 (3686): run_atlas exited; CPU time 72324.981763
09:36:56 (3686): called boinc_finish(0)

</stderr_txt>
]]>

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