Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:01:47 (32304): wrapper (7.7.26015): starting
15:01:47 (32304): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:01:47] Arguments: --nthreads 8
[2025-06-04 15:01:47] Threads: 8
[2025-06-04 15:01:47] Checking for CVMFS
[2025-06-04 15:01:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:01:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:01:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:01:47] 2.11.2.0 2952 36076 94824 146791 2 58 15560805 20275200 1 130560 0 12703771 99.962 7335448 8646 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 15:01:47] CVMFS is ok
[2025-06-04 15:01:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:01:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 15:01:47] Further information can be found at the LHC@home message board.
[2025-06-04 15:01:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:01:47] Checking for apptainer binary...
[2025-06-04 15:01:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:01:47] Running /usr/bin/apptainer --version
[2025-06-04 15:01:47] apptainer version 1.3.2-1.el7
[2025-06-04 15:01:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:01:48] c-204-35.aglt2.org
[2025-06-04 15:01:48] apptainer works
[2025-06-04 15:01:48] Set ATHENA_PROC_NUMBER=8
[2025-06-04 15:01:48] Set ATHENA_CORE_NUMBER=8
[2025-06-04 15:01:48] Starting ATLAS job with PandaID=6667032851
[2025-06-04 15:01:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:46:21]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:46:21] 2025-06-04 21:45:58,826 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 17:46:21] 2025-06-04 21:45:59,767 | INFO     | monitor loop #724: job 0:6667032851 is in state 'finished'
[2025-06-04 17:46:21] 2025-06-04 21:45:59,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 17:46:21] 2025-06-04 21:46:02,280 | INFO     | monitor loop #725: job 0:6667032851 is in state 'finished'
[2025-06-04 17:46:21] 2025-06-04 21:46:02,280 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 17:46:21] 2025-06-04 21:46:04,609 | INFO     | PID=3611 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 17:46:21] 2025-06-04 21:46:04,782 | INFO     | monitor loop #726: job 0:6667032851 is in state 'finished'
[2025-06-04 17:46:21] 2025-06-04 21:46:04,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 17:46:21] 2025-06-04 21:46:05,858 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 17:46:21] 2025-06-04 21:46:05,858 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667032851/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 17:46:21] 2025-06-04 21:46:05,859 | INFO     | extracted standard info from prmon json
[2025-06-04 17:46:21] 2025-06-04 21:46:05,859 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:46:21] 2025-06-04 21:46:05,860 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:46:21] 2025-06-04 21:46:05,860 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:46:21] 2025-06-04 21:46:05,860 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:46:21] 2025-06-04 21:46:05,865 | INFO     | fitting pss+swap vs Time
[2025-06-04 17:46:21] 2025-06-04 21:46:05,866 | INFO     | sum of square deviations: 1294014960.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,867 | INFO     | sum of deviations: 28224523466.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,867 | INFO     | mean x: 1749068640.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,867 | INFO     | mean y: 2469255.2795031057
[2025-06-04 17:46:21] 2025-06-04 21:46:05,867 | INFO     | -- intersect: -38147498402.996025
[2025-06-04 17:46:21] 2025-06-04 21:46:05,868 | INFO     | intersect: -38147498402.996025
[2025-06-04 17:46:21] 2025-06-04 21:46:05,868 | INFO     | chi2: 1.41554027910313
[2025-06-04 17:46:21] 2025-06-04 21:46:05,868 | INFO     | sum of square deviations: 1177156955.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,869 | INFO     | sum of deviations: 27026408436.000004
[2025-06-04 17:46:21] 2025-06-04 21:46:05,869 | INFO     | mean x: 1749068487.5
[2025-06-04 17:46:21] 2025-06-04 21:46:05,869 | INFO     | mean y: 2467693.6153846155
[2025-06-04 17:46:21] 2025-06-04 21:46:05,869 | INFO     | -- intersect: -40154487693.622475
[2025-06-04 17:46:21] 2025-06-04 21:46:05,870 | INFO     | intersect: -40154487693.622475
[2025-06-04 17:46:21] 2025-06-04 21:46:05,870 | INFO     | chi2: 1.4165468760952311
[2025-06-04 17:46:21] 2025-06-04 21:46:05,870 | INFO     | current chi2=1.4165468760952311 (change=-0.07111044503367421 %)
[2025-06-04 17:46:21] 2025-06-04 21:46:05,870 | INFO     | right removable region: 155
[2025-06-04 17:46:21] 2025-06-04 21:46:05,870 | INFO     | sum of square deviations: 1177156955.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,871 | INFO     | sum of deviations: 4977807461.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,871 | INFO     | mean x: 1749068792.5
[2025-06-04 17:46:21] 2025-06-04 21:46:05,871 | INFO     | mean y: 2499132.8076923075
[2025-06-04 17:46:21] 2025-06-04 21:46:05,871 | INFO     | -- intersect: -7393734350.015131
[2025-06-04 17:46:21] 2025-06-04 21:46:05,872 | INFO     | intersect: -7393734350.015131
[2025-06-04 17:46:21] 2025-06-04 21:46:05,872 | INFO     | chi2: 0.023220201448623835
[2025-06-04 17:46:21] 2025-06-04 21:46:05,872 | INFO     | current chi2=0.023220201448623835 (change=98.35962269732545 %)
[2025-06-04 17:46:21] 2025-06-04 21:46:05,872 | INFO     | sum of square deviations: 1067554900.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,873 | INFO     | sum of deviations: 3140782518.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,873 | INFO     | mean x: 1749068945.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,873 | INFO     | mean y: 2501688.701986755
[2025-06-04 17:46:21] 2025-06-04 21:46:05,873 | INFO     | -- intersect: -5143318133.053975
[2025-06-04 17:46:21] 2025-06-04 21:46:05,874 | INFO     | intersect: -5143318133.053975
[2025-06-04 17:46:21] 2025-06-04 21:46:05,874 | INFO     | chi2: 0.020014243799156804
[2025-06-04 17:46:21] 2025-06-04 21:46:05,874 | INFO     | current chi2=0.020014243799156804 (change=13.806760706018917 %)
[2025-06-04 17:46:21] 2025-06-04 21:46:05,874 | INFO     | left removable region: 20
[2025-06-04 17:46:21] 2025-06-04 21:46:05,874 | INFO     | sum of square deviations: 762879420.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,875 | INFO     | sum of deviations: 2483127610.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,875 | INFO     | mean x: 1749069067.0
[2025-06-04 17:46:21] 2025-06-04 21:46:05,875 | INFO     | mean y: 2501495.8962962963
[2025-06-04 17:46:21] 2025-06-04 21:46:05,875 | INFO     | -- intersect: -5690615369.236387
[2025-06-04 17:46:21] 2025-06-04 21:46:05,876 | INFO     | intersect: -5690615369.236387
[2025-06-04 17:46:21] 2025-06-04 21:46:05,876 | INFO     | chi2: 0.0005326500347925073
[2025-06-04 17:46:21] 2025-06-04 21:46:05,876 | INFO     | -- intersect: -5690615369.236387
[2025-06-04 17:46:21] 2025-06-04 21:46:05,876 | INFO     | current memory leak: 3.25 B/s (using 135 data points, chi2=0.00)
[2025-06-04 17:46:21] 2025-06-04 21:46:05,876 | INFO     | ..............................
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . Timing measurements:
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . get job = 0 s
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . initial setup = 2 s
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . payload setup = 12 s
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . stage-in = 0 s
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . payload execution = 9796 s
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . stage-out = 0 s
[2025-06-04 17:46:21] 2025-06-04 21:46:05,877 | INFO     | . log creation = 0 s
[2025-06-04 17:46:21] 2025-06-04 21:46:05,878 | INFO     | ..............................
[2025-06-04 17:46:21] 2025-06-04 21:46:06,107 | INFO     | 
[2025-06-04 17:46:21] 2025-06-04 21:46:06,108 | INFO     | job summary report
[2025-06-04 17:46:21] 2025-06-04 21:46:06,108 | INFO     | --------------------------------------------------
[2025-06-04 17:46:21] 2025-06-04 21:46:06,108 | INFO     | PanDA job id: 6667032851
[2025-06-04 17:46:21] 2025-06-04 21:46:06,108 | INFO     | task id: 44871837
[2025-06-04 17:46:21] 2025-06-04 21:46:06,108 | INFO     | errors: (none)
[2025-06-04 17:46:21] 2025-06-04 21:46:06,109 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:46:21] 2025-06-04 21:46:06,109 | INFO     | pilot state: finished 
[2025-06-04 17:46:21] 2025-06-04 21:46:06,109 | INFO     | transexitcode: 0
[2025-06-04 17:46:21] 2025-06-04 21:46:06,109 | INFO     | exeerrorcode: 0
[2025-06-04 17:46:21] 2025-06-04 21:46:06,109 | INFO     | exeerrordiag: 
[2025-06-04 17:46:21] 2025-06-04 21:46:06,110 | INFO     | exitcode: 0
[2025-06-04 17:46:21] 2025-06-04 21:46:06,110 | INFO     | exitmsg: OK
[2025-06-04 17:46:21] 2025-06-04 21:46:06,110 | INFO     | cpuconsumptiontime: 71366 s
[2025-06-04 17:46:21] 2025-06-04 21:46:06,110 | INFO     | nevents: 400
[2025-06-04 17:46:21] 2025-06-04 21:46:06,110 | INFO     | neventsw: 0
[2025-06-04 17:46:21] 2025-06-04 21:46:06,110 | INFO     | pid: 10154
[2025-06-04 17:46:21] 2025-06-04 21:46:06,111 | INFO     | pgrp: 10154
[2025-06-04 17:46:21] 2025-06-04 21:46:06,111 | INFO     | corecount: 8
[2025-06-04 17:46:21] 2025-06-04 21:46:06,111 | INFO     | event service: False
[2025-06-04 17:46:21] 2025-06-04 21:46:06,111 | INFO     | sizes: {0: 2397221, 1: 2397420, 7: 2397626, 12: 2397654, 9812: 2425971, 9814: 2435096, 9824: 2435210}
[2025-06-04 17:46:21] 2025-06-04 21:46:06,111 | INFO     | --------------------------------------------------
[2025-06-04 17:46:21] 2025-06-04 21:46:06,111 | INFO     | 
[2025-06-04 17:46:21] 2025-06-04 21:46:06,112 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 17:46:21] 2025-06-04 21:46:06,137 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,140 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,140 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,140 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,140 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,140 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,140 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,141 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:46:21] 2025-06-04 21:46:06,141 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,141 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:46:21] 2025-06-04 21:46:06,141 | INFO     | job 6667032851 has completed (purged errors)
[2025-06-04 17:46:21] 2025-06-04 21:46:06,141 | INFO     | overall cleanup function is called
[2025-06-04 17:46:21] 2025-06-04 21:46:07,149 | INFO     | --- collectZombieJob: --- 10, [10154]
[2025-06-04 17:46:21] 2025-06-04 21:46:07,150 | INFO     | zombie collector waiting for pid 10154
[2025-06-04 17:46:21] 2025-06-04 21:46:07,150 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:46:21] 2025-06-04 21:46:07,150 | INFO     | collected zombie processes
[2025-06-04 17:46:21] 2025-06-04 21:46:07,150 | INFO     | will attempt to kill all subprocesses of pid=10154
[2025-06-04 17:46:21] 2025-06-04 21:46:07,257 | INFO     | process IDs to be killed: [10154] (in reverse order)
[2025-06-04 17:46:21] 2025-06-04 21:46:07,316 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:46:21] 2025-06-04 21:46:07,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:46:21] 2025-06-04 21:46:07,320 | INFO     | did not find any defunct processes belonging to 10154
[2025-06-04 17:46:21] 2025-06-04 21:46:07,323 | INFO     | did not find any defunct processes belonging to 10154
[2025-06-04 17:46:21] 2025-06-04 21:46:07,323 | INFO     | ready for new job
[2025-06-04 17:46:21] 2025-06-04 21:46:07,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:46:21] 2025-06-04 21:46:07,326 | INFO     | **************************************
[2025-06-04 17:46:21] 2025-06-04 21:46:07,327 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:46:21] 2025-06-04 21:46:07,327 | INFO     | **************************************
[2025-06-04 17:46:21] 2025-06-04 21:46:07,327 | INFO     | 
[2025-06-04 17:46:21] 2025-06-04 21:46:07,327 | INFO     | architecture information:
[2025-06-04 17:46:21] 2025-06-04 21:46:07,328 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:46:21] 2025-06-04 21:46:07,347 | INFO     | cat /etc/os-release:
[2025-06-04 17:46:21] NAME="CentOS Linux"
[2025-06-04 17:46:21] VERSION="7 (Core)"
[2025-06-04 17:46:21] ID="centos"
[2025-06-04 17:46:21] ID_LIKE="rhel fedora"
[2025-06-04 17:46:21] VERSION_ID="7"
[2025-06-04 17:46:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:46:21] ANSI_COLOR="0;31"
[2025-06-04 17:46:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:46:21] HOME_URL="https://www.centos.org/"
[2025-06-04 17:46:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:46:21] 
[2025-06-04 17:46:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:46:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:46:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:46:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:46:21] 
[2025-06-04 17:46:21] 2025-06-04 21:46:07,347 | INFO     | **************************************
[2025-06-04 17:46:21] 2025-06-04 21:46:07,851 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 17:46:21] 2025-06-04 21:46:07,872 | INFO     | sufficient remaining disk space (18573426688 B)
[2025-06-04 17:46:21] 2025-06-04 21:46:07,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:46:21] 2025-06-04 21:46:07,873 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:46:21] 2025-06-04 21:46:07,874 | INFO     | update_server=False
[2025-06-04 17:46:21] 2025-06-04 21:46:07,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:46:21] 2025-06-04 21:46:07,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:46:21] 2025-06-04 21:46:08,279 | INFO     | all payload control threads have been joined
[2025-06-04 17:46:21] 2025-06-04 21:46:08,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:46:21] 2025-06-04 21:46:08,303 | INFO     | aborting loop
[2025-06-04 17:46:21] 2025-06-04 21:46:08,621 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:46:21] 2025-06-04 21:46:08,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:46:21] 2025-06-04 21:46:08,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:46:21] 2025-06-04 21:46:08,780 | INFO     | all data control threads have been joined
[2025-06-04 17:46:21] 2025-06-04 21:46:08,879 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:08,880 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:08,887 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:08,898 | INFO     | [job] validate thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,033 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,044 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,056 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:46:21] 2025-06-04 21:46:09,284 | INFO     | [payload] control thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,308 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,463 | INFO     | all job control threads have been joined
[2025-06-04 17:46:21] 2025-06-04 21:46:09,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,619 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,780 | INFO     | [data] control thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:09,782 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:10,466 | INFO     | [job] control thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:11,140 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:11,220 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:46:21] 2025-06-04 21:46:15,226 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:46:21] 2025-06-04 21:46:15,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140221237286720)>', '<ExcThread(monitor, started 140220641027840)>']
[2025-06-04 17:46:21] 2025-06-04 21:46:16,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:46:21] 2025-06-04 21:46:16,658 | INFO     | [monitor] control thread has ended
[2025-06-04 17:46:21] 2025-06-04 21:46:20,990 | INFO     | all workflow threads have been joined
[2025-06-04 17:46:21] 2025-06-04 21:46:20,990 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:46:21] 2025-06-04 21:46:20,990 | INFO     | traces error code: 0
[2025-06-04 17:46:21] 2025-06-04 21:46:20,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:46:21] 2025-06-04 21:46:21,105 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:46:21] 2025-06-04 21:46:21,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:46:21] 2025-06-04 21:46:21,115 [wrapper] pilotpid: 3611
[2025-06-04 17:46:21] 2025-06-04 21:46:21,119 [wrapper] Pilot exit status: 0
[2025-06-04 17:46:21] 2025-06-04 21:46:21,139 [wrapper] pandaids: 6667032851
[2025-06-04 17:46:21] 2025-06-04 21:46:21,186 [wrapper] cleanup supervisor_pilot 25477 3612
[2025-06-04 17:46:21] 2025-06-04 21:46:21,191 [wrapper] Test setup, not cleaning
[2025-06-04 17:46:21] 2025-06-04 21:46:21,196 [wrapper] apfmon messages muted
[2025-06-04 17:46:21] 2025-06-04 21:46:21,201 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:46:21] 2025-06-04 21:46:21,205 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:46:21]  *** Error codes and diagnostics ***
[2025-06-04 17:46:21]     "exeErrorCode": 0,
[2025-06-04 17:46:21]     "exeErrorDiag": "",
[2025-06-04 17:46:21]     "pilotErrorCode": 0,
[2025-06-04 17:46:21]     "pilotErrorDiag": "",
[2025-06-04 17:46:21]  *** Listing of results directory ***
[2025-06-04 17:46:21] total 418100
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas    495897 May 27 08:18 pilot3.tar.gz
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas      5111 May 27 09:01 queuedata.json
[2025-06-04 17:46:21] -rwx------ 1 boincer umatlas     37140 May 27 09:02 runpilot2-wrapper.sh
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas       100 Jun  4 15:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:46:21] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 15:01 run_atlas
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas       105 Jun  4 15:01 job.xml
[2025-06-04 17:46:21] -rw-r--r-- 2 boincer umatlas 224271549 Jun  4 15:01 EVNT.44871834._002664.pool.root.1
[2025-06-04 17:46:21] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:01 start_atlas.sh
[2025-06-04 17:46:21] drwxrwx--x 2 boincer umatlas      4096 Jun  4 15:01 shared
[2025-06-04 17:46:21] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 15:01 input.tar.gz
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas         0 Jun  4 15:01 boinc_lockfile
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 15:01 pandaJob.out
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas    990984 Jun  4 15:02 agis_schedconf.cvmfs.json
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas   1598969 Jun  4 15:02 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:46:21] drwx------ 4 boincer umatlas      4096 Jun  4 15:02 pilot3
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas      5905 Jun  4 17:40 init_data.xml
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas 197549101 Jun  4 17:45 HITS.44871837._067711.pool.root.1
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas        95 Jun  4 17:45 pilot_heartbeat.json
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas       529 Jun  4 17:45 boinc_task_state.xml
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas      1047 Jun  4 17:45 memory_monitor_summary.json
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas    351978 Jun  4 17:45 log.44871837._067711.job.log.tgz.1
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 17:45 boinc_mmap_file
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas        27 Jun  4 17:45 wrapper_checkpoint.txt
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas      7753 Jun  4 17:46 heartbeat.json
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas      4353 Jun  4 17:46 pilotlog.txt
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas    884886 Jun  4 17:46 log.44871837._067711.job.log.1
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas       357 Jun  4 17:46 output.list
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas       620 Jun  4 17:46 runtime_log
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas   1259520 Jun  4 17:46 result.tar.gz
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 17:46 runtime_log.err
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas       660 Jun  4 17:46 FqQMDm578d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZqRKDm9MgTtm.diag
[2025-06-04 17:46:21] -rw-r--r-- 1 boincer umatlas     21241 Jun  4 17:46 stderr.txt
[2025-06-04 17:46:21] HITS file was successfully produced:
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas 197549101 Jun  4 17:45 shared/HITS.pool.root.1
[2025-06-04 17:46:21]  *** Contents of shared directory: ***
[2025-06-04 17:46:21] total 413692
[2025-06-04 17:46:21] -rw-r--r-- 2 boincer umatlas 224271549 Jun  4 15:01 ATLAS.root_0
[2025-06-04 17:46:21] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 15:01 start_atlas.sh
[2025-06-04 17:46:21] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 15:01 input.tar.gz
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas 197549101 Jun  4 17:45 HITS.pool.root.1
[2025-06-04 17:46:21] -rw------- 1 boincer umatlas   1259520 Jun  4 17:46 result.tar.gz
17:46:23 (32304): run_atlas exited; CPU time 71318.663875
17:46:23 (32304): called boinc_finish(0)

</stderr_txt>
]]>

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