Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:48:28 (4997): wrapper (7.7.26015): starting
10:48:28 (4997): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 10:48:28] Arguments: --nthreads 8
[2025-06-05 10:48:28] Threads: 8
[2025-06-05 10:48:28] Checking for CVMFS
[2025-06-05 10:48:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 10:48:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 10:48:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 10:48:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 10:48:31] 2.11.2.0 14321 34443 94772 146812 2 69 17978674 25165825 3906 130560 0 17763155 99.828 18168228 1918 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 10:48:31] CVMFS is ok
[2025-06-05 10:48:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:48:31] Checking for apptainer binary...
[2025-06-05 10:48:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 10:48:31] Running /usr/bin/apptainer --version
[2025-06-05 10:48:31] apptainer version 1.3.2-1.el7
[2025-06-05 10:48:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:04:50] cg-vwn391.simple-grid.lan
[2025-06-05 11:04:50] apptainer works
[2025-06-05 11:04:50] Set ATHENA_PROC_NUMBER=8
[2025-06-05 11:04:50] Set ATHENA_CORE_NUMBER=8
[2025-06-05 11:04:50] Starting ATLAS job with PandaID=6667366267
[2025-06-05 11:04:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:43:50]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:43:50] 2025-06-05 14:20:59,567 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:43:50] 2025-06-05 14:20:59,567 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:43:50] 2025-06-05 14:20:59,567 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:43:50] 2025-06-05 14:20:59,567 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:43:50] 2025-06-05 14:20:59,575 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:43:50] 2025-06-05 14:20:59,576 | INFO     | sum of square deviations: 8971993338.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,579 | INFO     | sum of deviations: 54688117964.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,579 | INFO     | mean x: 1749123799.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,579 | INFO     | mean y: 2481261.3745928337
[2025-06-05 17:43:50] 2025-06-05 14:20:59,579 | INFO     | -- intersect: -10659172737.87761
[2025-06-05 17:43:50] 2025-06-05 14:20:59,579 | INFO     | intersect: -10659172737.87761
[2025-06-05 17:43:50] 2025-06-05 14:20:59,580 | INFO     | chi2: 2.2623280348813712
[2025-06-05 17:43:50] 2025-06-05 14:20:59,581 | INFO     | sum of square deviations: 8540720135.5
[2025-06-05 17:43:50] 2025-06-05 14:20:59,583 | INFO     | sum of deviations: 74045196693.49998
[2025-06-05 17:43:50] 2025-06-05 14:20:59,584 | INFO     | mean x: 1749123646.5
[2025-06-05 17:43:50] 2025-06-05 14:20:59,584 | INFO     | mean y: 2488010.9701986755
[2025-06-05 17:43:50] 2025-06-05 14:20:59,584 | INFO     | -- intersect: -15161830968.176664
[2025-06-05 17:43:50] 2025-06-05 14:20:59,584 | INFO     | intersect: -15161830968.176664
[2025-06-05 17:43:50] 2025-06-05 14:20:59,585 | INFO     | chi2: 1.4891940794566068
[2025-06-05 17:43:50] 2025-06-05 14:20:59,585 | INFO     | current chi2=1.4891940794566068 (change=34.17426401053749 %)
[2025-06-05 17:43:50] 2025-06-05 14:20:59,585 | INFO     | sum of square deviations: 8123493708.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,588 | INFO     | sum of deviations: 72642909997.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,589 | INFO     | mean x: 1749123494.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,589 | INFO     | mean y: 2487498.404040404
[2025-06-05 17:43:50] 2025-06-05 14:20:59,589 | INFO     | -- intersect: -15638740908.426674
[2025-06-05 17:43:50] 2025-06-05 14:20:59,589 | INFO     | intersect: -15638740908.426674
[2025-06-05 17:43:50] 2025-06-05 14:20:59,590 | INFO     | chi2: 1.4890262485842556
[2025-06-05 17:43:50] 2025-06-05 14:20:59,590 | INFO     | current chi2=1.4890262485842556 (change=0.011269912677359769 %)
[2025-06-05 17:43:50] 2025-06-05 14:20:59,590 | INFO     | right removable region: 296
[2025-06-05 17:43:50] 2025-06-05 14:20:59,590 | INFO     | sum of square deviations: 8540720135.5
[2025-06-05 17:43:50] 2025-06-05 14:20:59,594 | INFO     | sum of deviations: 6692307072.000008
[2025-06-05 17:43:50] 2025-06-05 14:20:59,594 | INFO     | mean x: 1749123951.5
[2025-06-05 17:43:50] 2025-06-05 14:20:59,594 | INFO     | mean y: 2498112.4437086093
[2025-06-05 17:43:50] 2025-06-05 14:20:59,594 | INFO     | -- intersect: -1368074205.1964316
[2025-06-05 17:43:50] 2025-06-05 14:20:59,594 | INFO     | intersect: -1368074205.1964316
[2025-06-05 17:43:50] 2025-06-05 14:20:59,595 | INFO     | chi2: 0.8171159862801958
[2025-06-05 17:43:50] 2025-06-05 14:20:59,595 | INFO     | current chi2=0.8171159862801958 (change=63.88163105961587 %)
[2025-06-05 17:43:50] 2025-06-05 14:20:59,596 | INFO     | sum of square deviations: 8123493708.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,599 | INFO     | sum of deviations: 65665280.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,599 | INFO     | mean x: 1749124104.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,599 | INFO     | mean y: 2500534.198653199
[2025-06-05 17:43:50] 2025-06-05 14:20:59,599 | INFO     | -- intersect: -11638299.186642397
[2025-06-05 17:43:50] 2025-06-05 14:20:59,599 | INFO     | intersect: -11638299.186642397
[2025-06-05 17:43:50] 2025-06-05 14:20:59,600 | INFO     | chi2: 0.7918137247973078
[2025-06-05 17:43:50] 2025-06-05 14:20:59,600 | INFO     | current chi2=0.7918137247973078 (change=3.096532427186119 %)
[2025-06-05 17:43:50] 2025-06-05 14:20:59,600 | INFO     | left removable region: 20
[2025-06-05 17:43:50] 2025-06-05 14:20:59,601 | INFO     | sum of square deviations: 6519285025.0
[2025-06-05 17:43:50] 2025-06-05 14:20:59,603 | INFO     | sum of deviations: 13324529510.000002
[2025-06-05 17:43:50] 2025-06-05 14:20:59,604 | INFO     | mean x: 1749124073.5
[2025-06-05 17:43:50] 2025-06-05 14:20:59,604 | INFO     | mean y: 2510074.7391304346
[2025-06-05 17:43:50] 2025-06-05 14:20:59,604 | INFO     | -- intersect: -3572460991.049202
[2025-06-05 17:43:50] 2025-06-05 14:20:59,604 | INFO     | intersect: -3572460991.049202
[2025-06-05 17:43:50] 2025-06-05 14:20:59,604 | INFO     | chi2: 0.002037725886981264
[2025-06-05 17:43:50] 2025-06-05 14:20:59,605 | INFO     | -- intersect: -3572460991.049202
[2025-06-05 17:43:50] 2025-06-05 14:20:59,605 | INFO     | current memory leak: 2.04 B/s (using 276 data points, chi2=0.00)
[2025-06-05 17:43:50] 2025-06-05 14:20:59,606 | INFO     | ..............................
[2025-06-05 17:43:50] 2025-06-05 14:20:59,606 | INFO     | . Timing measurements:
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | . get job = 0 s
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | . initial setup = 3 s
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | . payload setup = 20 s
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | . stage-in = 0 s
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | . payload execution = 18714 s
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | . stage-out = 6 s
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | . log creation = 0 s
[2025-06-05 17:43:50] 2025-06-05 14:20:59,607 | INFO     | ..............................
[2025-06-05 17:43:50] 2025-06-05 14:21:00,050 | INFO     | 
[2025-06-05 17:43:50] 2025-06-05 14:21:00,050 | INFO     | job summary report
[2025-06-05 17:43:50] 2025-06-05 14:21:00,050 | INFO     | --------------------------------------------------
[2025-06-05 17:43:50] 2025-06-05 14:21:00,050 | INFO     | PanDA job id: 6667366267
[2025-06-05 17:43:50] 2025-06-05 14:21:00,050 | INFO     | task id: 44871837
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | errors: (none)
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | pilot state: finished 
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | transexitcode: 0
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | exeerrorcode: 0
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | exeerrordiag: 
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | exitcode: 0
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | exitmsg: OK
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | cpuconsumptiontime: 71801 s
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | nevents: 400
[2025-06-05 17:43:50] 2025-06-05 14:21:00,051 | INFO     | neventsw: 0
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | pid: 27403
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | pgrp: 27403
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | corecount: 8
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | event service: False
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | sizes: {0: 2396562, 1: 2397419, 2: 2397419, 12: 2397447, 23: 2397475, 34: 2397503, 45: 2397659, 46: 2397893, 55: 2397921, 18739: 2429664, 18746: 2438943, 18837: 24
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | --------------------------------------------------
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | 
[2025-06-05 17:43:50] 2025-06-05 14:21:00,052 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-06-05 17:43:50] 2025-06-05 14:21:00,411 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:43:50] 2025-06-05 14:21:00,413 | INFO     | job 6667366267 has completed (purged errors)
[2025-06-05 17:43:50] 2025-06-05 14:21:00,414 | INFO     | overall cleanup function is called
[2025-06-05 17:43:50] 2025-06-05 14:21:01,423 | INFO     | --- collectZombieJob: --- 10, [27403]
[2025-06-05 17:43:50] 2025-06-05 14:21:01,423 | INFO     | zombie collector waiting for pid 27403
[2025-06-05 17:43:50] 2025-06-05 14:21:01,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:43:50] 2025-06-05 14:21:01,423 | INFO     | collected zombie processes
[2025-06-05 17:43:50] 2025-06-05 14:21:01,423 | INFO     | will attempt to kill all subprocesses of pid=27403
[2025-06-05 17:43:50] 2025-06-05 14:21:01,551 | INFO     | process IDs to be killed: [27403] (in reverse order)
[2025-06-05 17:43:50] 2025-06-05 14:21:01,706 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:43:50] 2025-06-05 14:21:01,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:43:50] 2025-06-05 14:21:01,710 | INFO     | did not find any defunct processes belonging to 27403
[2025-06-05 17:43:50] 2025-06-05 14:21:01,713 | INFO     | did not find any defunct processes belonging to 27403
[2025-06-05 17:43:50] 2025-06-05 14:21:01,714 | INFO     | ready for new job
[2025-06-05 17:43:50] 2025-06-05 14:21:01,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:43:50] 2025-06-05 14:21:01,717 | INFO     | **************************************
[2025-06-05 17:43:50] 2025-06-05 14:21:01,717 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:43:50] 2025-06-05 14:21:01,717 | INFO     | **************************************
[2025-06-05 17:43:50] 2025-06-05 14:21:01,717 | INFO     | 
[2025-06-05 17:43:50] 2025-06-05 14:21:01,718 | INFO     | pilot is running in a VM
[2025-06-05 17:43:50] 2025-06-05 14:21:01,718 | INFO     | architecture information:
[2025-06-05 17:43:50] 2025-06-05 14:21:01,719 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:43:50] 2025-06-05 14:21:01,746 | INFO     | cat /etc/os-release:
[2025-06-05 17:43:50] NAME="CentOS Linux"
[2025-06-05 17:43:50] VERSION="7 (Core)"
[2025-06-05 17:43:50] ID="centos"
[2025-06-05 17:43:50] ID_LIKE="rhel fedora"
[2025-06-05 17:43:50] VERSION_ID="7"
[2025-06-05 17:43:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:43:50] ANSI_COLOR="0;31"
[2025-06-05 17:43:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:43:50] HOME_URL="https://www.centos.org/"
[2025-06-05 17:43:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:43:50] 
[2025-06-05 17:43:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:43:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:43:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:43:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:43:50] 
[2025-06-05 17:43:50] 2025-06-05 14:21:01,746 | INFO     | **************************************
[2025-06-05 17:43:50] 2025-06-05 14:21:02,250 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-06-05 17:43:50] 2025-06-05 14:21:02,391 | INFO     | sufficient remaining disk space (496578330624 B)
[2025-06-05 17:43:50] 2025-06-05 14:21:02,391 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:43:50] 2025-06-05 14:21:02,391 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:43:50] 2025-06-05 14:21:02,392 | INFO     | update_server=False
[2025-06-05 17:43:50] 2025-06-05 14:21:02,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:43:50] 2025-06-05 14:21:02,448 | INFO     | all data control threads have been joined
[2025-06-05 17:43:50] 2025-06-05 14:21:02,515 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 17:43:50] 2025-06-05 14:21:02,515 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 17:43:50] 2025-06-05 14:21:02,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:43:50] 2025-06-05 14:21:02,515 | INFO     | will abort loop
[2025-06-05 17:43:50] 2025-06-05 14:21:02,571 | INFO     | all job control threads have been joined
[2025-06-05 17:43:50] 2025-06-05 14:21:02,577 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:43:50] 2025-06-05 14:21:02,577 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:43:50] 2025-06-05 14:21:02,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:43:50] 2025-06-05 14:21:03,398 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,409 | INFO     | all payload control threads have been joined
[2025-06-05 17:43:50] 2025-06-05 14:21:03,455 | INFO     | [data] control thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,514 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,522 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,577 | INFO     | [job] control thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,623 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,729 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:43:50] 2025-06-05 14:21:03,768 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:03,880 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:04,263 | INFO     | [job] validate thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:04,415 | INFO     | [payload] control thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:04,460 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:04,653 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:04,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:43:50] 2025-06-05 14:21:04,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:43:50] 2025-06-05 14:21:05,736 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:05,772 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:08,836 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:43:50] 2025-06-05 14:21:10,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139857212069696)>', '<ExcThread(monitor, started 139856902592256)>']
[2025-06-05 17:43:50] 2025-06-05 14:21:10,625 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:43:50] 2025-06-05 14:21:10,625 | INFO     | [monitor] control thread has ended
[2025-06-05 17:43:50] 2025-06-05 14:21:15,576 | INFO     | all workflow threads have been joined
[2025-06-05 17:43:50] 2025-06-05 14:21:15,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:43:50] 2025-06-05 14:21:15,576 | INFO     | traces error code: 0
[2025-06-05 17:43:50] 2025-06-05 14:21:15,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:43:50] 2025-06-05 14:21:16,096 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:43:50] 2025-06-05 14:21:16,160 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:43:50] 2025-06-05 14:21:16,223 [wrapper] pilotpid: 20133
[2025-06-05 17:43:50] 2025-06-05 14:21:16,313 [wrapper] Pilot exit status: 0
[2025-06-05 17:43:50] 2025-06-05 14:21:16,638 [wrapper] pandaids: 6667366267
[2025-06-05 17:43:50] 2025-06-05 14:21:17,051 [wrapper] cleanup supervisor_pilot 17398 20134
[2025-06-05 17:43:50] 2025-06-05 14:21:17,090 [wrapper] Test setup, not cleaning
[2025-06-05 17:43:50] 2025-06-05 14:21:17,129 [wrapper] apfmon messages muted
[2025-06-05 17:43:50] 2025-06-05 14:21:17,184 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:43:50] 2025-06-05 14:21:17,260 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:43:50]  *** Error codes and diagnostics ***
[2025-06-05 17:43:50]     "exeErrorCode": 0,
[2025-06-05 17:43:50]     "exeErrorDiag": "",
[2025-06-05 17:43:50]     "pilotErrorCode": 0,
[2025-06-05 17:43:50]     "pilotErrorDiag": "",
[2025-06-05 17:43:50]  *** Listing of results directory ***
[2025-06-05 17:43:50] total 419532
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc    495897 May 27 19:43 pilot3.tar.gz
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc      5111 May 27 19:55 queuedata.json
[2025-06-05 17:43:50] -rwx------. 1 boinc boinc     37140 May 27 19:56 runpilot2-wrapper.sh
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc       100 Jun  5 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:43:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 10:48 run_atlas
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc       105 Jun  5 10:48 job.xml
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc      6393 Jun  5 10:48 init_data.xml
[2025-06-05 17:43:50] -rw-r--r--. 2 boinc boinc 222878706 Jun  5 10:48 EVNT.44871834._002802.pool.root.1
[2025-06-05 17:43:50] -rw-r--r--. 2 boinc boinc     15093 Jun  5 10:48 start_atlas.sh
[2025-06-05 17:43:50] drwxrwx--x. 2 boinc boinc        68 Jun  5 10:48 shared
[2025-06-05 17:43:50] -rw-r--r--. 2 boinc boinc    508879 Jun  5 10:48 input.tar.gz
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc         0 Jun  5 10:48 boinc_lockfile
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc      2558 Jun  5 11:04 pandaJob.out
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc    983281 Jun  5 11:05 agis_schedconf.cvmfs.json
[2025-06-05 17:43:50] drwx------. 4 boinc boinc      4096 Jun  5 11:05 pilot3
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc 198800411 Jun  5 16:18 HITS.44871837._071319.pool.root.1
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc       531 Jun  5 16:18 boinc_task_state.xml
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc      1016 Jun  5 16:19 memory_monitor_summary.json
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc   1598969 Jun  5 16:19 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc    418367 Jun  5 16:19 log.44871837._071319.job.log.tgz.1
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc        95 Jun  5 16:20 pilot_heartbeat.json
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc      7686 Jun  5 16:20 heartbeat.json
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc      4603 Jun  5 16:21 pilotlog.txt
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc   1630425 Jun  5 16:21 log.44871837._071319.job.log.1
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc       357 Jun  5 16:21 output.list
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc       620 Jun  5 16:21 runtime_log
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc   2068480 Jun  5 16:21 result.tar.gz
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc      8673 Jun  5 16:21 runtime_log.err
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc       657 Jun  5 16:21 AkBMDmWiDe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmy2ZKDmc52uzm.diag
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc      8192 Jun  5 17:43 boinc_mmap_file
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc        28 Jun  5 17:43 wrapper_checkpoint.txt
[2025-06-05 17:43:50] -rw-r--r--. 1 boinc boinc     20504 Jun  5 17:43 stderr.txt
[2025-06-05 17:43:50] HITS file was successfully produced:
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc 198800411 Jun  5 16:18 shared/HITS.pool.root.1
[2025-06-05 17:43:50]  *** Contents of shared directory: ***
[2025-06-05 17:43:50] total 414336
[2025-06-05 17:43:50] -rw-r--r--. 2 boinc boinc 222878706 Jun  5 10:48 ATLAS.root_0
[2025-06-05 17:43:50] -rw-r--r--. 2 boinc boinc     15093 Jun  5 10:48 start_atlas.sh
[2025-06-05 17:43:50] -rw-r--r--. 2 boinc boinc    508879 Jun  5 10:48 input.tar.gz
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc 198800411 Jun  5 16:18 HITS.pool.root.1
[2025-06-05 17:43:50] -rw-------. 1 boinc boinc   2068480 Jun  5 16:21 result.tar.gz
17:43:52 (4997): run_atlas exited; CPU time 72049.260269
17:43:52 (4997): called boinc_finish(0)

</stderr_txt>
]]>

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