Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:43:41 (788115): wrapper (7.7.26015): starting
14:43:41 (788115): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 14:43:41] Arguments: --nthreads 12
[2025-06-04 14:43:41] Threads: 12
[2025-06-04 14:43:41] Checking for CVMFS
[2025-06-04 14:43:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:43:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:43:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:43:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:43:41] 2.12.6.0 7432 188 112316 146791 3 329 16567271 25181185 15041 16776704 0 660922 98.701 2514153 21447 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 14:43:41] CVMFS is ok
[2025-06-04 14:43:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 14:43:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 14:43:41] Further information can be found at the LHC@home message board.
[2025-06-04 14:43:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:43:41] Checking for apptainer binary...
[2025-06-04 14:43:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:43:41] Running /usr/bin/apptainer --version
[2025-06-04 14:43:42] apptainer version 1.4.1-1.el9
[2025-06-04 14:43:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:43:42] c-16-35.aglt2.org
[2025-06-04 14:43:42] apptainer works
[2025-06-04 14:43:42] Set ATHENA_PROC_NUMBER=12
[2025-06-04 14:43:42] Set ATHENA_CORE_NUMBER=12
[2025-06-04 14:43:42] Starting ATLAS job with PandaID=6679950908
[2025-06-04 14:43:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:55:31]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:55:31] 2025-06-05 01:54:54,586 | INFO     | .. there are 20 such processes running
[2025-06-04 21:55:31] 2025-06-05 01:54:55,586 | INFO     | 25844s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 21:55:31] 2025-06-05 01:54:55,678 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 21:55:31] 2025-06-05 01:54:55,686 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2774.6423125
[2025-06-04 21:55:31] 2025-06-05 01:54:55,695 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679950908/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,696 | INFO     | extracted standard info from prmon json
[2025-06-04 21:55:31] 2025-06-05 01:54:55,696 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:55:31] 2025-06-05 01:54:55,696 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:55:31] 2025-06-05 01:54:55,696 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:55:31] 2025-06-05 01:54:55,697 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:55:31] 2025-06-05 01:54:55,704 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:55:31] 2025-06-05 01:54:55,705 | INFO     | sum of square deviations: 23303297120.94101
[2025-06-04 21:55:31] 2025-06-05 01:54:55,710 | INFO     | sum of deviations: 102105900954.72278
[2025-06-04 21:55:31] 2025-06-05 01:54:55,710 | INFO     | mean x: 1749075593.9881516
[2025-06-04 21:55:31] 2025-06-05 01:54:55,710 | INFO     | mean y: 2338476.144549763
[2025-06-04 21:55:31] 2025-06-05 01:54:55,711 | INFO     | -- intersect: -7661424228.129181
[2025-06-04 21:55:31] 2025-06-05 01:54:55,711 | INFO     | intersect: -7661424228.129181
[2025-06-04 21:55:31] 2025-06-05 01:54:55,711 | INFO     | chi2: 2.4640112239189036
[2025-06-04 21:55:31] 2025-06-05 01:54:55,712 | INFO     | sum of square deviations: 22484823672.235115
[2025-06-04 21:55:31] 2025-06-05 01:54:55,717 | INFO     | sum of deviations: 99204136105.41486
[2025-06-04 21:55:31] 2025-06-05 01:54:55,717 | INFO     | mean x: 1749075441.4940047
[2025-06-04 21:55:31] 2025-06-05 01:54:55,717 | INFO     | mean y: 2337934.565947242
[2025-06-04 21:55:31] 2025-06-05 01:54:55,717 | INFO     | -- intersect: -7714668019.58221
[2025-06-04 21:55:31] 2025-06-05 01:54:55,718 | INFO     | intersect: -7714668019.58221
[2025-06-04 21:55:31] 2025-06-05 01:54:55,718 | INFO     | chi2: 2.460254181621543
[2025-06-04 21:55:31] 2025-06-05 01:54:55,718 | INFO     | current chi2=2.460254181621543 (change=0.15247667140838342 %)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,719 | INFO     | right removable region: 416
[2025-06-04 21:55:31] 2025-06-05 01:54:55,719 | INFO     | sum of square deviations: 22484698012.235096
[2025-06-04 21:55:31] 2025-06-05 01:54:55,724 | INFO     | sum of deviations: 19537596464.079136
[2025-06-04 21:55:31] 2025-06-05 01:54:55,724 | INFO     | mean x: 1749075746.4940047
[2025-06-04 21:55:31] 2025-06-05 01:54:55,724 | INFO     | mean y: 2353810.4316546763
[2025-06-04 21:55:31] 2025-06-05 01:54:55,724 | INFO     | -- intersect: -1517468074.723871
[2025-06-04 21:55:31] 2025-06-05 01:54:55,724 | INFO     | intersect: -1517468074.723871
[2025-06-04 21:55:31] 2025-06-05 01:54:55,725 | INFO     | chi2: 0.5540051868073563
[2025-06-04 21:55:31] 2025-06-05 01:54:55,725 | INFO     | current chi2=0.5540051868073563 (change=77.51612568037596 %)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,726 | INFO     | sum of square deviations: 21685494616.0
[2025-06-04 21:55:31] 2025-06-05 01:54:55,731 | INFO     | sum of deviations: -1195507140.000003
[2025-06-04 21:55:31] 2025-06-05 01:54:55,731 | INFO     | mean x: 1749075899.0
[2025-06-04 21:55:31] 2025-06-05 01:54:55,731 | INFO     | mean y: 2357759.094660194
[2025-06-04 21:55:31] 2025-06-05 01:54:55,731 | INFO     | -- intersect: 98783169.84427795
[2025-06-04 21:55:31] 2025-06-05 01:54:55,731 | INFO     | intersect: 98783169.84427795
[2025-06-04 21:55:31] 2025-06-05 01:54:55,732 | INFO     | chi2: 0.4454731649856699
[2025-06-04 21:55:31] 2025-06-05 01:54:55,732 | INFO     | current chi2=0.4454731649856699 (change=19.590434242527436 %)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,732 | INFO     | left removable region: 20
[2025-06-04 21:55:31] 2025-06-05 01:54:55,733 | INFO     | sum of square deviations: 19255947874.9773
[2025-06-04 21:55:31] 2025-06-05 01:54:55,737 | INFO     | sum of deviations: 17483932669.643925
[2025-06-04 21:55:31] 2025-06-05 01:54:55,737 | INFO     | mean x: 1749076021.0075758
[2025-06-04 21:55:31] 2025-06-05 01:54:55,737 | INFO     | mean y: 2352929.7853535353
[2025-06-04 21:55:31] 2025-06-05 01:54:55,738 | INFO     | -- intersect: -1585765587.3572989
[2025-06-04 21:55:31] 2025-06-05 01:54:55,738 | INFO     | intersect: -1585765587.3572989
[2025-06-04 21:55:31] 2025-06-05 01:54:55,738 | INFO     | chi2: 0.2979260857924348
[2025-06-04 21:55:31] 2025-06-05 01:54:55,739 | INFO     | -- intersect: -1585765587.3572989
[2025-06-04 21:55:31] 2025-06-05 01:54:55,739 | INFO     | current memory leak: 0.91 B/s (using 396 data points, chi2=0.30)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,739 | INFO     | could have reported an average CPU frequency of 2635 MHz (17 samples)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | ..............................
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . Timing measurements:
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . get job = 0 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . initial setup = 5 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . payload setup = 30 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . stage-in = 0 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . payload execution = 25752 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . stage-out = 2 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,740 | INFO     | . log creation = 0 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,741 | INFO     | ..............................
[2025-06-04 21:55:31] 2025-06-05 01:54:55,847 | INFO     | 
[2025-06-04 21:55:31] 2025-06-05 01:54:55,847 | INFO     | job summary report
[2025-06-04 21:55:31] 2025-06-05 01:54:55,847 | INFO     | --------------------------------------------------
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | PanDA job id: 6679950908
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | task id: 44871837
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | errors: (none)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | pilot state: finished 
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | transexitcode: 0
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | exeerrorcode: 0
[2025-06-04 21:55:31] 2025-06-05 01:54:55,848 | INFO     | exeerrordiag: 
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | exitcode: 0
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | exitmsg: OK
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | cpuconsumptiontime: 69747 s
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | nevents: 400
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | neventsw: 0
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | pid: 808538
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | pgrp: 808538
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | corecount: 12
[2025-06-04 21:55:31] 2025-06-05 01:54:55,849 | INFO     | event service: False
[2025-06-04 21:55:31] 2025-06-05 01:54:55,850 | INFO     | sizes: {0: 2397405, 1: 2397660, 2: 2397660, 12: 2397688, 19: 2397978, 23: 2398006, 25787: 2433549, 25790: 2442490, 25793: 2442546, 25800: 2442804}
[2025-06-04 21:55:31] 2025-06-05 01:54:55,850 | INFO     | --------------------------------------------------
[2025-06-04 21:55:31] 2025-06-05 01:54:55,850 | INFO     | 
[2025-06-04 21:55:31] 2025-06-05 01:54:55,850 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 21:55:31] 2025-06-05 01:54:55,869 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,870 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,870 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,870 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,871 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,872 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,872 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,872 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,872 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,872 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,872 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:55:31] 2025-06-05 01:54:55,872 | INFO     | job 6679950908 has completed (purged errors)
[2025-06-04 21:55:31] 2025-06-05 01:54:55,873 | INFO     | overall cleanup function is called
[2025-06-04 21:55:31] 2025-06-05 01:54:56,881 | INFO     | --- collectZombieJob: --- 10, [808538]
[2025-06-04 21:55:31] 2025-06-05 01:54:56,881 | INFO     | zombie collector waiting for pid 808538
[2025-06-04 21:55:31] 2025-06-05 01:54:56,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:55:31] 2025-06-05 01:54:56,882 | INFO     | collected zombie processes
[2025-06-04 21:55:31] 2025-06-05 01:54:56,882 | INFO     | will attempt to kill all subprocesses of pid=808538
[2025-06-04 21:55:31] 2025-06-05 01:54:57,275 | INFO     | process IDs to be killed: [808538] (in reverse order)
[2025-06-04 21:55:31] 2025-06-05 01:54:57,437 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:55:31] 2025-06-05 01:54:57,438 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:55:31] 2025-06-05 01:54:57,451 | INFO     | did not find any defunct processes belonging to 808538
[2025-06-04 21:55:31] 2025-06-05 01:54:57,463 | INFO     | did not find any defunct processes belonging to 808538
[2025-06-04 21:55:31] 2025-06-05 01:54:57,464 | INFO     | ready for new job
[2025-06-04 21:55:31] 2025-06-05 01:54:57,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:55:31] 2025-06-05 01:54:57,466 | INFO     | ***************************************
[2025-06-04 21:55:31] 2025-06-05 01:54:57,466 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-04 21:55:31] 2025-06-05 01:54:57,466 | INFO     | ***************************************
[2025-06-04 21:55:31] 2025-06-05 01:54:57,466 | INFO     | 
[2025-06-04 21:55:31] 2025-06-05 01:54:57,481 | INFO     | architecture information:
[2025-06-04 21:55:31] 2025-06-05 01:54:57,482 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:55:31] 2025-06-05 01:54:57,498 | INFO     | cat /etc/os-release:
[2025-06-04 21:55:31] NAME="CentOS Linux"
[2025-06-04 21:55:31] VERSION="7 (Core)"
[2025-06-04 21:55:31] ID="centos"
[2025-06-04 21:55:31] ID_LIKE="rhel fedora"
[2025-06-04 21:55:31] VERSION_ID="7"
[2025-06-04 21:55:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:55:31] ANSI_COLOR="0;31"
[2025-06-04 21:55:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:55:31] HOME_URL="https://www.centos.org/"
[2025-06-04 21:55:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:55:31] 
[2025-06-04 21:55:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:55:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:55:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:55:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:55:31] 
[2025-06-04 21:55:31] 2025-06-05 01:54:57,498 | INFO     | ***************************************
[2025-06-04 21:55:31] 2025-06-05 01:54:58,001 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 21:55:31] 2025-06-05 01:54:58,023 | INFO     | sufficient remaining disk space (64551387136 B)
[2025-06-04 21:55:31] 2025-06-05 01:54:58,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:55:31] 2025-06-05 01:54:58,024 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:55:31] 2025-06-05 01:54:58,024 | INFO     | update_server=False
[2025-06-04 21:55:31] 2025-06-05 01:54:58,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:55:31] 2025-06-05 01:54:58,165 | INFO     | all payload control threads have been joined
[2025-06-04 21:55:31] 2025-06-05 01:54:58,304 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 21:55:31] 2025-06-05 01:54:58,304 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 21:55:31] 2025-06-05 01:54:58,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:55:31] 2025-06-05 01:54:58,305 | INFO     | will abort loop
[2025-06-04 21:55:31] 2025-06-05 01:54:58,480 | INFO     | all job control threads have been joined
[2025-06-04 21:55:31] 2025-06-05 01:54:58,587 | INFO     | all data control threads have been joined
[2025-06-04 21:55:31] 2025-06-05 01:54:58,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:55:31] 2025-06-05 01:54:59,030 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,117 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,118 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,171 | INFO     | [payload] control thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,310 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,352 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,486 | INFO     | [job] control thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,596 | INFO     | [data] control thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,624 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,628 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,631 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,647 | INFO     | [job] validate thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:54:59,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:55:31] 2025-06-05 01:55:00,038 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:55:00,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:55:31] 2025-06-05 01:55:00,994 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:55:01,867 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:55:03,958 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:55:31] 2025-06-05 01:55:05,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374125598528)>', '<ExcThread(monitor, started 140373422765824)>']
[2025-06-04 21:55:31] 2025-06-05 01:55:10,620 | INFO     | all workflow threads have been joined
[2025-06-04 21:55:31] 2025-06-05 01:55:10,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:55:31] 2025-06-05 01:55:10,622 | INFO     | traces error code: 0
[2025-06-04 21:55:31] 2025-06-05 01:55:10,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:55:31] 2025-06-05 01:55:29,382 | INFO     | PID=794187 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 21:55:31] 2025-06-05 01:55:29,383 | INFO     | .. there are 20 such processes running
[2025-06-04 21:55:31] 2025-06-05 01:55:29,384 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:55:31] 2025-06-05 01:55:29,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:55:31] 2025-06-05 01:55:29,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:55:31] 2025-06-05 01:55:29,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:55:31] 2025-06-05 01:55:29,385 | INFO     | [monitor] control thread has ended
[2025-06-04 21:55:31] 2025-06-05 01:55:30,273 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:55:31] 2025-06-05 01:55:30,316 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:55:31] 2025-06-05 01:55:30,322 [wrapper] pilotpid: 794187
[2025-06-04 21:55:31] 2025-06-05 01:55:30,325 [wrapper] Pilot exit status: 0
[2025-06-04 21:55:31] 2025-06-05 01:55:30,445 [wrapper] pandaids: 6679950908
[2025-06-04 21:55:31] 2025-06-05 01:55:30,558 [wrapper] cleanup supervisor_pilot 1911259 794188
[2025-06-04 21:55:31] 2025-06-05 01:55:30,602 [wrapper] Test setup, not cleaning
[2025-06-04 21:55:31] 2025-06-05 01:55:30,645 [wrapper] apfmon messages muted
[2025-06-04 21:55:31] 2025-06-05 01:55:30,658 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:55:31] 2025-06-05 01:55:30,668 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:55:31]  *** Error codes and diagnostics ***
[2025-06-04 21:55:31]     "exeErrorCode": 0,
[2025-06-04 21:55:31]     "exeErrorDiag": "",
[2025-06-04 21:55:31]     "pilotErrorCode": 0,
[2025-06-04 21:55:31]     "pilotErrorDiag": "",
[2025-06-04 21:55:31]  *** Listing of results directory ***
[2025-06-04 21:55:31] total 415560
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-04 21:55:31] -rwx------. 1 boincer umatlas     37140 Jun  4 14:43 runpilot2-wrapper.sh
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 14:43 queuedata.json
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas       100 Jun  4 14:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:55:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 14:43 run_atlas
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas       105 Jun  4 14:43 job.xml
[2025-06-04 21:55:31] -rw-r--r--. 2 boincer umatlas 222852386 Jun  4 14:43 EVNT.44871834._002918.pool.root.1
[2025-06-04 21:55:31] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 14:43 start_atlas.sh
[2025-06-04 21:55:31] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 14:43 shared
[2025-06-04 21:55:31] -rw-r--r--. 2 boincer umatlas    564108 Jun  4 14:43 input.tar.gz
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas         0 Jun  4 14:43 boinc_lockfile
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas      2558 Jun  4 14:43 pandaJob.out
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas    990984 Jun  4 14:44 agis_schedconf.cvmfs.json
[2025-06-04 21:55:31] drwx------. 6 boincer umatlas      4096 Jun  4 14:44 pilot3
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas      6611 Jun  4 21:45 init_data.xml
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas 193660542 Jun  4 21:53 HITS.44871837._102242.pool.root.1
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas       531 Jun  4 21:53 boinc_task_state.xml
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas      1039 Jun  4 21:54 memory_monitor_summary.json
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas   1598969 Jun  4 21:54 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas    548919 Jun  4 21:54 log.44871837._102242.job.log.tgz.1
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas        28 Jun  4 21:54 wrapper_checkpoint.txt
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas      7754 Jun  4 21:54 heartbeat.json
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas        95 Jun  4 21:55 pilot_heartbeat.json
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas       822 Jun  4 21:55 pilotlog.txt
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas   1993770 Jun  4 21:55 log.44871837._102242.job.log.1
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 21:55 boinc_mmap_file
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas       357 Jun  4 21:55 output.list
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas       620 Jun  4 21:55 runtime_log
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas   2560000 Jun  4 21:55 result.tar.gz
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas      8657 Jun  4 21:55 runtime_log.err
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas       659 Jun  4 21:55 6YlKDm0F8g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmB2nKDmhNI0Cn.diag
[2025-06-04 21:55:31] -rw-r--r--. 1 boincer umatlas     21199 Jun  4 21:55 stderr.txt
[2025-06-04 21:55:31] HITS file was successfully produced:
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas 193660542 Jun  4 21:53 shared/HITS.pool.root.1
[2025-06-04 21:55:31]  *** Contents of shared directory: ***
[2025-06-04 21:55:31] total 409828
[2025-06-04 21:55:31] -rw-r--r--. 2 boincer umatlas 222852386 Jun  4 14:43 ATLAS.root_0
[2025-06-04 21:55:31] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 14:43 start_atlas.sh
[2025-06-04 21:55:31] -rw-r--r--. 2 boincer umatlas    564108 Jun  4 14:43 input.tar.gz
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas 193660542 Jun  4 21:53 HITS.pool.root.1
[2025-06-04 21:55:31] -rw-------. 1 boincer umatlas   2560000 Jun  4 21:55 result.tar.gz
21:55:32 (788115): run_atlas exited; CPU time 70694.784215
21:55:32 (788115): called boinc_finish(0)

</stderr_txt>
]]>

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