Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:34:07 (3626988): wrapper (7.7.26015): starting
14:34:07 (3626988): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 14:34:07] Arguments: --nthreads 12
[2025-06-04 14:34:07] Threads: 12
[2025-06-04 14:34:07] Checking for CVMFS
[2025-06-04 14:34:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:34:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:34:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:34:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:34:08] 2.12.6.0 32194 1181 121796 146791 3 258 32202575 32935937 12050 16776704 0 6940925 99.765 3793362 39176 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 14:34:08] CVMFS is ok
[2025-06-04 14:34:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 14:34:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 14:34:08] Further information can be found at the LHC@home message board.
[2025-06-04 14:34:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:34:08] Checking for apptainer binary...
[2025-06-04 14:34:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:34:08] Running /usr/bin/apptainer --version
[2025-06-04 14:34:08] apptainer version 1.4.1-1.el9
[2025-06-04 14:34:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:34:08] c6-1-24-4.aglt2.org
[2025-06-04 14:34:08] apptainer works
[2025-06-04 14:34:08] Set ATHENA_PROC_NUMBER=12
[2025-06-04 14:34:08] Set ATHENA_CORE_NUMBER=12
[2025-06-04 14:34:08] Starting ATLAS job with PandaID=6679945873
[2025-06-04 14:34:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:28:57]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:28:57]  mtime=0
[2025-06-04 15:28:57]  protocol_id=None
[2025-06-04 15:28:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 15:28:57]  replicas=None
[2025-06-04 15:28:57]  scope=mc23_13p6TeV
[2025-06-04 15:28:57]  status=None
[2025-06-04 15:28:57]  status_code=0
[2025-06-04 15:28:57]  storage_token=
[2025-06-04 15:28:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679945873/log.45006595._056870.job.log.tgz.1
[2025-06-04 15:28:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/34/log.45006595._056870.job.log.tgz.1
[2025-06-04 15:28:57]  workdir=None
[2025-06-04 15:28:57] ]
[2025-06-04 15:28:57] 2025-06-04 19:28:27,715 | INFO     | transferring file log.45006595._056870.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679945873/log.45006595._056870.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 15:28:57] 2025-06-04 19:28:27,716 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679945873/log.45006595._056870.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._056870.job
[2025-06-04 15:28:57] 2025-06-04 19:28:27,733 | INFO     | adding to output.list: log.45006595._056870.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/34/log.45006595._056870.job.log.tg
[2025-06-04 15:28:57] 2025-06-04 19:28:27,734 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 15:28:57] 2025-06-04 19:28:27,734 | INFO     | summary of transferred files:
[2025-06-04 15:28:57] 2025-06-04 19:28:27,734 | INFO     |  -- lfn=log.45006595._056870.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 15:28:57] 2025-06-04 19:28:27,735 | INFO     | stage-out finished correctly
[2025-06-04 15:28:57] 2025-06-04 19:28:28,144 | INFO     | monitor loop #244: job 0:6679945873 is in state 'finished'
[2025-06-04 15:28:57] 2025-06-04 19:28:28,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 15:28:57] 2025-06-04 19:28:30,648 | INFO     | monitor loop #245: job 0:6679945873 is in state 'finished'
[2025-06-04 15:28:57] 2025-06-04 19:28:30,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 15:28:57] 2025-06-04 19:28:31,069 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 15:28:57] 2025-06-04 19:28:33,082 | INFO     | job 6679945873 has state=finished
[2025-06-04 15:28:57] 2025-06-04 19:28:33,083 | INFO     | preparing for final server update for job 6679945873 in state='finished'
[2025-06-04 15:28:57] 2025-06-04 19:28:33,084 | INFO     | this job has now completed (state=finished)
[2025-06-04 15:28:57] 2025-06-04 19:28:33,084 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 15:28:57] 2025-06-04 19:28:33,084 | INFO     | log transfer has been attempted: DONE
[2025-06-04 15:28:57] 2025-06-04 19:28:33,084 | INFO     | job 6679945873 has finished - writing final server update
[2025-06-04 15:28:57] 2025-06-04 19:28:33,084 | INFO     | total number of processed events: 400 (read)
[2025-06-04 15:28:57] 2025-06-04 19:28:33,102 | INFO     | executing command: lscpu
[2025-06-04 15:28:57] 2025-06-04 19:28:33,151 | INFO     | monitor loop #246: job 0:6679945873 is in state 'finished'
[2025-06-04 15:28:57] 2025-06-04 19:28:33,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 15:28:57] 2025-06-04 19:28:33,176 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 15:28:57] 2025-06-04 19:28:35,654 | INFO     | monitor loop #247: job 0:6679945873 is in state 'finished'
[2025-06-04 15:28:57] 2025-06-04 19:28:35,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 15:28:57] 2025-06-04 19:28:36,249 | INFO     | PID=3630581 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 15:28:57] 2025-06-04 19:28:36,249 | INFO     | .. there are 15 such processes running
[2025-06-04 15:28:57] 2025-06-04 19:28:36,899 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 15:28:57] 2025-06-04 19:28:36,900 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679945873/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 15:28:57] 2025-06-04 19:28:36,901 | INFO     | extracted standard info from prmon json
[2025-06-04 15:28:57] 2025-06-04 19:28:36,901 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:28:57] 2025-06-04 19:28:36,901 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:28:57] 2025-06-04 19:28:36,902 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:28:57] 2025-06-04 19:28:36,902 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:28:57] 2025-06-04 19:28:36,903 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:28:57] 2025-06-04 19:28:36,903 | INFO     | sum of square deviations: 30168007.5
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | sum of deviations: -3118886232.5
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | mean x: 1749063763.5
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | mean y: 2722439.9782608696
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | -- intersect: 180827753451.54858
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | intersect: 180827753451.54858
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | chi2: 0.11657969525220276
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | -- intersect: 180827753451.54858
[2025-06-04 15:28:57] 2025-06-04 19:28:36,904 | INFO     | current memory leak: -103.38 B/s (using 46 data points, chi2=0.12)
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | ..............................
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . Timing measurements:
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . get job = 0 s
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . initial setup = 2 s
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . payload setup = 7 s
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . stage-in = 0 s
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . payload execution = 3221 s
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . stage-out = 0 s
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | . log creation = 0 s
[2025-06-04 15:28:57] 2025-06-04 19:28:36,905 | INFO     | ..............................
[2025-06-04 15:28:57] 2025-06-04 19:28:37,202 | INFO     | 
[2025-06-04 15:28:57] 2025-06-04 19:28:37,202 | INFO     | job summary report
[2025-06-04 15:28:57] 2025-06-04 19:28:37,202 | INFO     | --------------------------------------------------
[2025-06-04 15:28:57] 2025-06-04 19:28:37,202 | INFO     | PanDA job id: 6679945873
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | task id: 45006595
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | errors: (none)
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | pilot state: finished 
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | transexitcode: 0
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | exeerrorcode: 0
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | exeerrordiag: 
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | exitcode: 0
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | exitmsg: OK
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | cpuconsumptiontime: 33641 s
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | nevents: 400
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | neventsw: 0
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | pid: 3637003
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | pgrp: 3637003
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | corecount: 12
[2025-06-04 15:28:57] 2025-06-04 19:28:37,203 | INFO     | event service: False
[2025-06-04 15:28:57] 2025-06-04 19:28:37,204 | INFO     | sizes: {0: 2397291, 5: 2397497, 11: 2397553, 3231: 2422966, 3233: 2431907, 3236: 2431963, 3242: 2432261}
[2025-06-04 15:28:57] 2025-06-04 19:28:37,204 | INFO     | --------------------------------------------------
[2025-06-04 15:28:57] 2025-06-04 19:28:37,204 | INFO     | 
[2025-06-04 15:28:57] 2025-06-04 19:28:37,204 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 15:28:57] 2025-06-04 19:28:37,223 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,223 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,223 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,223 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,223 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,224 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:28:57] 2025-06-04 19:28:37,225 | INFO     | job 6679945873 has completed (purged errors)
[2025-06-04 15:28:57] 2025-06-04 19:28:37,225 | INFO     | overall cleanup function is called
[2025-06-04 15:28:57] 2025-06-04 19:28:38,232 | INFO     | --- collectZombieJob: --- 10, [3637003]
[2025-06-04 15:28:57] 2025-06-04 19:28:38,232 | INFO     | zombie collector waiting for pid 3637003
[2025-06-04 15:28:57] 2025-06-04 19:28:38,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:28:57] 2025-06-04 19:28:38,233 | INFO     | collected zombie processes
[2025-06-04 15:28:57] 2025-06-04 19:28:38,233 | INFO     | will attempt to kill all subprocesses of pid=3637003
[2025-06-04 15:28:57] 2025-06-04 19:28:38,381 | INFO     | process IDs to be killed: [3637003] (in reverse order)
[2025-06-04 15:28:57] 2025-06-04 19:28:38,444 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:28:57] 2025-06-04 19:28:38,444 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:28:57] 2025-06-04 19:28:38,455 | INFO     | did not find any defunct processes belonging to 3637003
[2025-06-04 15:28:57] 2025-06-04 19:28:38,465 | INFO     | did not find any defunct processes belonging to 3637003
[2025-06-04 15:28:57] 2025-06-04 19:28:38,466 | INFO     | ready for new job
[2025-06-04 15:28:57] 2025-06-04 19:28:38,466 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:28:57] 2025-06-04 19:28:38,468 | INFO     | **************************************
[2025-06-04 15:28:57] 2025-06-04 19:28:38,468 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:28:57] 2025-06-04 19:28:38,468 | INFO     | **************************************
[2025-06-04 15:28:57] 2025-06-04 19:28:38,468 | INFO     | 
[2025-06-04 15:28:57] 2025-06-04 19:28:38,484 | INFO     | architecture information:
[2025-06-04 15:28:57] 2025-06-04 19:28:38,485 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:28:57] 2025-06-04 19:28:38,498 | INFO     | cat /etc/os-release:
[2025-06-04 15:28:57] NAME="CentOS Linux"
[2025-06-04 15:28:57] VERSION="7 (Core)"
[2025-06-04 15:28:57] ID="centos"
[2025-06-04 15:28:57] ID_LIKE="rhel fedora"
[2025-06-04 15:28:57] VERSION_ID="7"
[2025-06-04 15:28:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:28:57] ANSI_COLOR="0;31"
[2025-06-04 15:28:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:28:57] HOME_URL="https://www.centos.org/"
[2025-06-04 15:28:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:28:57] 
[2025-06-04 15:28:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:28:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:28:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:28:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:28:57] 
[2025-06-04 15:28:57] 2025-06-04 19:28:38,498 | INFO     | **************************************
[2025-06-04 15:28:57] 2025-06-04 19:28:39,000 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 15:28:57] 2025-06-04 19:28:39,015 | INFO     | sufficient remaining disk space (76298584064 B)
[2025-06-04 15:28:57] 2025-06-04 19:28:39,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:28:57] 2025-06-04 19:28:39,015 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:28:57] 2025-06-04 19:28:39,016 | INFO     | update_server=False
[2025-06-04 15:28:57] 2025-06-04 19:28:39,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:28:57] 2025-06-04 19:28:39,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:28:57] 2025-06-04 19:28:39,016 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 15:28:57] 2025-06-04 19:28:39,016 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:28:57] 2025-06-04 19:28:39,017 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:28:57] 2025-06-04 19:28:39,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:28:57] 2025-06-04 19:28:39,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:28:57] 2025-06-04 19:28:39,163 | INFO     | aborting loop
[2025-06-04 15:28:57] 2025-06-04 19:28:39,255 | INFO     | all payload control threads have been joined
[2025-06-04 15:28:57] 2025-06-04 19:28:39,745 | INFO     | all data control threads have been joined
[2025-06-04 15:28:57] 2025-06-04 19:28:40,021 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,088 | INFO     | [job] validate thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,168 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,260 | INFO     | [payload] control thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,292 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,334 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,336 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,593 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,669 | INFO     | all job control threads have been joined
[2025-06-04 15:28:57] 2025-06-04 19:28:40,670 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:40,750 | INFO     | [data] control thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:41,022 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:41,588 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:41,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:28:57] 2025-06-04 19:28:41,674 | INFO     | [job] control thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:42,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:28:57] 2025-06-04 19:28:43,015 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:45,662 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:49,460 | INFO     | job.realtimelogging is not enabled
[2025-06-04 15:28:57] 2025-06-04 19:28:50,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:28:57] 2025-06-04 19:28:52,070 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398972389184)>', '<ExcThread(monitor, started 140398471124736)>']
[2025-06-04 15:28:57] 2025-06-04 19:28:52,072 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:28:57] 2025-06-04 19:28:52,072 | INFO     | [monitor] control thread has ended
[2025-06-04 15:28:57] 2025-06-04 19:28:57,095 | INFO     | all workflow threads have been joined
[2025-06-04 15:28:57] 2025-06-04 19:28:57,095 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:28:57] 2025-06-04 19:28:57,096 | INFO     | traces error code: 0
[2025-06-04 15:28:57] 2025-06-04 19:28:57,096 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:28:57] 2025-06-04 19:28:57,244 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:28:57] 2025-06-04 19:28:57,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:28:57] 2025-06-04 19:28:57,253 [wrapper] pilotpid: 3630581
[2025-06-04 15:28:57] 2025-06-04 19:28:57,257 [wrapper] Pilot exit status: 0
[2025-06-04 15:28:57] 2025-06-04 19:28:57,271 [wrapper] pandaids: 6679945873
[2025-06-04 15:28:57] 2025-06-04 19:28:57,314 [wrapper] cleanup supervisor_pilot 3758606 3630582
[2025-06-04 15:28:57] 2025-06-04 19:28:57,316 [wrapper] Test setup, not cleaning
[2025-06-04 15:28:57] 2025-06-04 19:28:57,318 [wrapper] apfmon messages muted
[2025-06-04 15:28:57] 2025-06-04 19:28:57,320 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:28:57] 2025-06-04 19:28:57,322 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:28:57]  *** Error codes and diagnostics ***
[2025-06-04 15:28:57]     "exeErrorCode": 0,
[2025-06-04 15:28:57]     "exeErrorDiag": "",
[2025-06-04 15:28:57]     "pilotErrorCode": 0,
[2025-06-04 15:28:57]     "pilotErrorDiag": "",
[2025-06-04 15:28:57]  *** Listing of results directory ***
[2025-06-04 15:28:57] total 387636
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 14:17 pilot3.tar.gz
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 14:31 queuedata.json
[2025-06-04 15:28:57] -rwx------. 1 boincer umatlas     37140 Jun  4 14:33 runpilot2-wrapper.sh
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas       100 Jun  4 14:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:28:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 14:34 run_atlas
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas       105 Jun  4 14:34 job.xml
[2025-06-04 15:28:57] -rw-r--r--. 2 boincer umatlas 215606941 Jun  4 14:34 EVNT.45006593._001868.pool.root.1
[2025-06-04 15:28:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 14:34 start_atlas.sh
[2025-06-04 15:28:57] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 14:34 shared
[2025-06-04 15:28:57] -rw-r--r--. 2 boincer umatlas    508886 Jun  4 14:34 input.tar.gz
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas         0 Jun  4 14:34 boinc_lockfile
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 14:34 pandaJob.out
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas    990984 Jun  4 14:34 agis_schedconf.cvmfs.json
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas   1598969 Jun  4 14:34 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:28:57] drwx------. 4 boincer umatlas      4096 Jun  4 14:34 pilot3
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas      6839 Jun  4 15:27 init_data.xml
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas       529 Jun  4 15:27 boinc_task_state.xml
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas 176103171 Jun  4 15:27 HITS.45006595._056870.pool.root.1
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas        95 Jun  4 15:28 pilot_heartbeat.json
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas      1037 Jun  4 15:28 memory_monitor_summary.json
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas    358924 Jun  4 15:28 log.45006595._056870.job.log.tgz.1
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas      7722 Jun  4 15:28 heartbeat.json
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas        27 Jun  4 15:28 wrapper_checkpoint.txt
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 15:28 boinc_mmap_file
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas      4548 Jun  4 15:28 pilotlog.txt
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas    336706 Jun  4 15:28 log.45006595._056870.job.log.1
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas       357 Jun  4 15:28 output.list
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas       620 Jun  4 15:28 runtime_log
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas    716800 Jun  4 15:28 result.tar.gz
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 15:28 runtime_log.err
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas       654 Jun  4 15:28 7UXMDms67g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm71nKDmr1DJRn.diag
[2025-06-04 15:28:57] -rw-r--r--. 1 boincer umatlas     21729 Jun  4 15:28 stderr.txt
[2025-06-04 15:28:57] HITS file was successfully produced:
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas 176103171 Jun  4 15:27 shared/HITS.pool.root.1
[2025-06-04 15:28:57]  *** Contents of shared directory: ***
[2025-06-04 15:28:57] total 383756
[2025-06-04 15:28:57] -rw-r--r--. 2 boincer umatlas 215606941 Jun  4 14:34 ATLAS.root_0
[2025-06-04 15:28:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 14:34 start_atlas.sh
[2025-06-04 15:28:57] -rw-r--r--. 2 boincer umatlas    508886 Jun  4 14:34 input.tar.gz
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas 176103171 Jun  4 15:27 HITS.pool.root.1
[2025-06-04 15:28:57] -rw-------. 1 boincer umatlas    716800 Jun  4 15:28 result.tar.gz
15:28:59 (3626988): run_atlas exited; CPU time 33660.286704
15:28:59 (3626988): called boinc_finish(0)

</stderr_txt>
]]>

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