Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 21:22:03 (45588): Detected: vboxwrapper 26206
2025-06-04 21:22:03 (45588): Detected: BOINC client v8.2.1
2025-06-04 21:22:04 (45588): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-04 21:22:04 (45588): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 21:22:05 (45588): Create VM. (boinc_4bc9a3449d321575, slot#18)
2025-06-04 21:22:05 (45588): Setting Memory Size for VM. (4096MB)
2025-06-04 21:22:06 (45588): Setting CPU Count for VM. (1)
2025-06-04 21:22:06 (45588): Setting Chipset Options for VM.
2025-06-04 21:22:06 (45588): Setting Graphics Controller Options for VM.
2025-06-04 21:22:06 (45588): Setting Boot Options for VM.
2025-06-04 21:22:07 (45588): Setting Network Configuration for NAT.
2025-06-04 21:22:07 (45588): Enabling VM Network Access.
2025-06-04 21:22:07 (45588): Disabling USB Support for VM.
2025-06-04 21:22:07 (45588): Disabling COM Port Support for VM.
2025-06-04 21:22:08 (45588): Disabling LPT Port Support for VM.
2025-06-04 21:22:08 (45588): Disabling Audio Support for VM.
2025-06-04 21:22:08 (45588): Disabling Clipboard Support for VM.
2025-06-04 21:22:08 (45588): Disabling Drag and Drop Support for VM.
2025-06-04 21:22:09 (45588): Adding storage controller(s) to VM.
2025-06-04 21:22:09 (45588): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 21:22:09 (45588): Adding VirtualBox Guest Additions to VM.
2025-06-04 21:22:10 (45588): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 21:22:10 (45588): forwarding host port 65204 to guest port 80
2025-06-04 21:22:10 (45588): Enabling remote desktop for VM.
2025-06-04 21:22:11 (45588): Required extension pack not installed, remote desktop not enabled.
2025-06-04 21:22:11 (45588): Enabling shared directory for VM.
2025-06-04 21:22:11 (45588): Starting VM using VBoxManage interface. (boinc_4bc9a3449d321575, slot#18)
2025-06-04 21:22:16 (45588): Successfully started VM. (PID = '39728')
2025-06-04 21:22:16 (45588): Reporting VM Process ID to BOINC.
2025-06-04 21:22:16 (45588): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-04 21:22:16 (45588): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 21:22:16 (45588): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 21:22:16 (45588): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 21:22:16 (45588): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 21:22:16 (45588): Detected: Web Application Enabled (http://localhost:65204)
2025-06-04 21:22:16 (45588): Preference change detected
2025-06-04 21:22:16 (45588): Setting CPU throttle for VM. (100%)
2025-06-04 21:22:16 (45588): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 21:22:18 (45588): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 21:22:18 (45588): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 21:22:20 (45588): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 21:22:20 (45588): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 21:22:20 (45588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 21:22:23 (45588): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 21:22:23 (45588): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 21:22:28 (45588): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.000151 main     Log opened 2025-06-04T21:22:26.940123000Z
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.000269 main     OS Product: Linux
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.000294 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.000309 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.000325 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.000325 main     Process ID: 1245
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.000326 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 21:22:28 (45588): Guest Log: 00:00:00.001094 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 21:22:28 (45588): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 21:22:28 (45588): Guest Log: [INFO] Mounting shared directory
2025-06-04 21:22:28 (45588): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 21:22:32 (45588): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 21:22:32 (45588): Guest Log: [INFO] Detected branch: prod
2025-06-04 21:22:32 (45588): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 21:22:32 (45588): Guest Log: Copying input files
2025-06-04 21:22:33 (45588): Guest Log: Copied input files into RunAtlas.
2025-06-04 21:22:33 (45588): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-04 21:22:38 (45588): Guest Log: 00:00:10.013212 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 820 357 000ns (GuestNow=1 749 064 958 132 395 000 ns GuestLast=1 749 072 146 952 752 000 ns fSetTimeLastLoop=true )
2025-06-04 21:22:42 (45588): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 21:22:42 (45588): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 21:22:42 (45588): Guest Log: 2.6.3.0 1515 0 29504 146792 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-04 21:22:42 (45588): Guest Log: copied the webapp to /var/www
2025-06-04 21:22:42 (45588): Guest Log: core_number=1
2025-06-04 21:22:42 (45588): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 21:22:43 (45588): Guest Log:  *** Starting ATLAS job. (PandaID=6668230004 taskID=44871837) ***
2025-06-04 23:02:18 (45588): Status Report: Elapsed Time: '6000.000000'
2025-06-04 23:02:18 (45588): Status Report: CPU Time: '5609.578125'
2025-06-05 00:42:21 (45588): Status Report: Elapsed Time: '12000.000000'
2025-06-05 00:42:21 (45588): Status Report: CPU Time: '11588.640625'
2025-06-05 02:22:24 (45588): Status Report: Elapsed Time: '18000.000000'
2025-06-05 02:22:24 (45588): Status Report: CPU Time: '17567.000000'
2025-06-05 04:02:27 (45588): Status Report: Elapsed Time: '24000.000000'
2025-06-05 04:02:27 (45588): Status Report: CPU Time: '23546.609375'
2025-06-05 05:42:29 (45588): Status Report: Elapsed Time: '30000.000000'
2025-06-05 05:42:29 (45588): Status Report: CPU Time: '29527.281250'
2025-06-05 06:20:25 (45588): Guest Log:  *** Job finished ***
2025-06-05 06:20:25 (45588): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:00,728 | INFO     | [data] queue_monitor thread has finished
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:05,942 | INFO     | job.realtimelogging is not enabled
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:06,943 | INFO     | [payload] run_realtimelog thread has finished
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:07,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139810178058048)>', '<ExcThread(monitor, started 139809859278592)>']
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:08,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:08,182 | INFO     | [monitor] control thread has ended
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,562 | INFO     | all workflow threads have been joined
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,562 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,562 | INFO     | traces error code: 0
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,562 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,641 [wrapper] ==== pilot stdout END ====
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,644 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,645 [wrapper] pilotpid: 5755
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,647 [wrapper] Pilot exit status: 0
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,660 [wrapper] pandaids: 6668230004
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,674 [wrapper] cleanup supervisor_pilot 10830 5756
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,675 [wrapper] Test setup, not cleaning
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,677 [wrapper] apfmon messages muted
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,678 [wrapper] ==== wrapper stdout END ====
2025-06-05 06:20:25 (45588): Guest Log: 2025-06-05 04:20:12,679 [wrapper] ==== wrapper stderr END ====
2025-06-05 06:20:25 (45588): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 06:20:25 (45588): Guest Log:     "exeErrorCode": 0,
2025-06-05 06:20:25 (45588): Guest Log:     "exeErrorDiag": "",
2025-06-05 06:20:25 (45588): Guest Log:     "pilotErrorCode": 0,
2025-06-05 06:20:25 (45588): Guest Log:     "pilotErrorDiag": "",
2025-06-05 06:20:25 (45588): Guest Log:  *** Listing of results directory ***
2025-06-05 06:20:25 (45588): Guest Log: total 206916
2025-06-05 06:20:25 (45588): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 28 07:38 pilot3.tar.gz
2025-06-05 06:20:25 (45588): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 07:39 runpilot2-wrapper.sh
2025-06-05 06:20:25 (45588): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 07:39 queuedata.json
2025-06-05 06:20:25 (45588): Guest Log: -rwxr-xr-x. 1 atlas atlas      9354 Jun  4 19:22 init_data.xml
2025-06-05 06:20:25 (45588): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 Jun  4 19:22 input.tar.gz
2025-06-05 06:20:25 (45588): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 19:22 start_atlas.sh
2025-06-05 06:20:25 (45588): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 19:22 EVNT.44871834._003153.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 06:20:25 (45588): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  4 19:22 pandaJob.out
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas    991007 Jun  4 19:22 agis_schedconf.cvmfs.json
2025-06-05 06:20:25 (45588): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 19:22 pilot3
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas 201521847 Jun  5 04:19 HITS.44871837._080762.pool.root.1
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 04:19 pilot_heartbeat.json
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas      1024 Jun  5 04:19 memory_monitor_summary.json
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 04:19 agis_ddmendpoints.agis.ALL.json
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas    446729 Jun  5 04:19 log.44871837._080762.job.log.tgz.1
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas      7688 Jun  5 04:19 heartbeat.json
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas      4485 Jun  5 04:20 pilotlog.txt
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas   2849868 Jun  5 04:20 log.44871837._080762.job.log.1
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 04:20 output.list
2025-06-05 06:20:25 (45588): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 04:20 runtime_log
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas   3317760 Jun  5 04:20 result.tar.gz
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas       657 Jun  5 04:20 tp9KDm0YQe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0XbKDmv2Mygm.diag
2025-06-05 06:20:25 (45588): Guest Log: -rw-r--r--. 1 atlas atlas      8465 Jun  5 04:20 runtime_log.err
2025-06-05 06:20:25 (45588): Guest Log: Looking for outputfile HITS.44871837._080762.pool.root.1
2025-06-05 06:20:25 (45588): Guest Log: HITS file was successfully produced
2025-06-05 06:20:25 (45588): Guest Log: -rw-------. 1 atlas atlas 201521847 Jun  5 04:19 /home/atlas/RunAtlas/HITS.44871837._080762.pool.root.1
2025-06-05 06:20:26 (45588): Guest Log: Successfully finished the ATLAS job!
2025-06-05 06:20:26 (45588): Guest Log: Copying the results back to the shared directory!
2025-06-05 06:20:26 (45588): Guest Log:  *** Contents of shared directory: ***
2025-06-05 06:20:26 (45588): Guest Log: total 419252
2025-06-05 06:20:26 (45588): Guest Log: -rwxrwxrwx. 1 root root 223932311 Jun  4 19:22 ATLAS.root_0
2025-06-05 06:20:26 (45588): Guest Log: -rwxrwxrwx. 1 root root 201521847 Jun  5  2025 HITS.pool.root.1
2025-06-05 06:20:26 (45588): Guest Log: -rwxrwxrwx. 1 root root      9354 Jun  4 19:22 init_data.xml
2025-06-05 06:20:26 (45588): Guest Log: -rwxrwxrwx. 1 root root    508874 Jun  4 18:27 input.tar.gz
2025-06-05 06:20:26 (45588): Guest Log: -rwxrwxrwx. 1 root root   3317760 Jun  5  2025 result.tar.gz
2025-06-05 06:20:26 (45588): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 18:27 start_atlas.sh
2025-06-05 06:20:26 (45588): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 06:20:26 (45588): VM Completion File Detected.
2025-06-05 06:20:26 (45588): Powering off VM.
2025-06-05 06:20:27 (45588): Successfully stopped VM.
2025-06-05 06:20:27 (45588): Deregistering VM. (boinc_4bc9a3449d321575, slot#18)
2025-06-05 06:20:27 (45588): Removing network bandwidth throttle group from VM.
2025-06-05 06:20:27 (45588): Removing VM from VirtualBox.
06:20:32 (45588): called boinc_finish(0)

</stderr_txt>
]]>

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