Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:55 (19408): wrapper (7.7.26015): starting
03:59:55 (19408): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 03:59:55] Arguments: --nthreads 8
[2025-06-05 03:59:55] Threads: 8
[2025-06-05 03:59:55] Checking for CVMFS
[2025-06-05 03:59:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 03:59:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 03:59:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 03:59:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 03:59:59] 2.11.2.0 12812 34217 102776 146800 1 60 18189389 25165825 2748 130560 0 18548879 99.825 19468825 2268 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 03:59:59] CVMFS is ok
[2025-06-05 03:59:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 03:59:59] Checking for apptainer binary...
[2025-06-05 03:59:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 03:59:59] Running /usr/bin/apptainer --version
[2025-06-05 03:59:59] apptainer version 1.3.2-1.el7
[2025-06-05 03:59:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:00:12] cg-vwn215.simple-grid.lan
[2025-06-05 04:00:12] apptainer works
[2025-06-05 04:00:12] Set ATHENA_PROC_NUMBER=8
[2025-06-05 04:00:12] Set ATHENA_CORE_NUMBER=8
[2025-06-05 04:00:12] Starting ATLAS job with PandaID=6666950193
[2025-06-05 04:00:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 09:31:54]  *** The last 200 lines of the pilot log: ***
[2025-06-05 09:31:54] 2025-06-05 07:26:28,360 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 09:31:54] 2025-06-05 07:26:28,360 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 09:31:54] 2025-06-05 07:26:28,360 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 09:31:54] 2025-06-05 07:26:28,366 | INFO     | fitting pss+swap vs Time
[2025-06-05 09:31:54] 2025-06-05 07:26:28,367 | INFO     | sum of square deviations: 9148487810.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,371 | INFO     | sum of deviations: 175421207072.99997
[2025-06-05 09:31:54] 2025-06-05 07:26:28,371 | INFO     | mean x: 1749098880.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,371 | INFO     | mean y: 2436409.3462783173
[2025-06-05 09:31:54] 2025-06-05 07:26:28,371 | INFO     | -- intersect: -33536334499.245262
[2025-06-05 09:31:54] 2025-06-05 07:26:28,371 | INFO     | intersect: -33536334499.245262
[2025-06-05 09:31:54] 2025-06-05 07:26:28,372 | INFO     | chi2: 7.456089555007006
[2025-06-05 09:31:54] 2025-06-05 07:26:28,373 | INFO     | sum of square deviations: 8711530780.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,376 | INFO     | sum of deviations: 192978967155.5
[2025-06-05 09:31:54] 2025-06-05 07:26:28,376 | INFO     | mean x: 1749098727.5
[2025-06-05 09:31:54] 2025-06-05 07:26:28,376 | INFO     | mean y: 2442443.226973684
[2025-06-05 09:31:54] 2025-06-05 07:26:28,376 | INFO     | -- intersect: -38743820918.531975
[2025-06-05 09:31:54] 2025-06-05 07:26:28,377 | INFO     | intersect: -38743820918.531975
[2025-06-05 09:31:54] 2025-06-05 07:26:28,377 | INFO     | chi2: 6.729353954116618
[2025-06-05 09:31:54] 2025-06-05 07:26:28,377 | INFO     | current chi2=6.729353954116618 (change=9.746873284299024 %)
[2025-06-05 09:31:54] 2025-06-05 07:26:28,377 | INFO     | right removable region: 303
[2025-06-05 09:31:54] 2025-06-05 07:26:28,378 | INFO     | sum of square deviations: 8711530780.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,381 | INFO     | sum of deviations: 68335155572.000015
[2025-06-05 09:31:54] 2025-06-05 07:26:28,381 | INFO     | mean x: 1749099032.5
[2025-06-05 09:31:54] 2025-06-05 07:26:28,381 | INFO     | mean y: 2473760.5592105263
[2025-06-05 09:31:54] 2025-06-05 07:26:28,381 | INFO     | -- intersect: -13717842164.987255
[2025-06-05 09:31:54] 2025-06-05 07:26:28,381 | INFO     | intersect: -13717842164.987255
[2025-06-05 09:31:54] 2025-06-05 07:26:28,382 | INFO     | chi2: 2.7038314297799126
[2025-06-05 09:31:54] 2025-06-05 07:26:28,382 | INFO     | current chi2=2.7038314297799126 (change=63.736602010578025 %)
[2025-06-05 09:31:54] 2025-06-05 07:26:28,383 | INFO     | sum of square deviations: 8288713550.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,385 | INFO     | sum of deviations: 2398210059.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,386 | INFO     | mean x: 1749099185.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,386 | INFO     | mean y: 2497464.996655518
[2025-06-05 09:31:54] 2025-06-05 07:26:28,386 | INFO     | -- intersect: -503577118.75533116
[2025-06-05 09:31:54] 2025-06-05 07:26:28,386 | INFO     | intersect: -503577118.75533116
[2025-06-05 09:31:54] 2025-06-05 07:26:28,386 | INFO     | chi2: 0.8134091570815943
[2025-06-05 09:31:54] 2025-06-05 07:26:28,387 | INFO     | current chi2=0.8134091570815943 (change=69.91642496189917 %)
[2025-06-05 09:31:54] 2025-06-05 07:26:28,387 | INFO     | sum of square deviations: 7879803557.5
[2025-06-05 09:31:54] 2025-06-05 07:26:28,390 | INFO     | sum of deviations: -4037534764.499998
[2025-06-05 09:31:54] 2025-06-05 07:26:28,390 | INFO     | mean x: 1749099337.5
[2025-06-05 09:31:54] 2025-06-05 07:26:28,390 | INFO     | mean y: 2499854.629251701
[2025-06-05 09:31:54] 2025-06-05 07:26:28,390 | INFO     | -- intersect: 898721356.8770462
[2025-06-05 09:31:54] 2025-06-05 07:26:28,391 | INFO     | intersect: 898721356.8770462
[2025-06-05 09:31:54] 2025-06-05 07:26:28,391 | INFO     | chi2: 0.7923765446570114
[2025-06-05 09:31:54] 2025-06-05 07:26:28,391 | INFO     | current chi2=0.7923765446570114 (change=2.5857358798424706 %)
[2025-06-05 09:31:54] 2025-06-05 07:26:28,391 | INFO     | left removable region: 30
[2025-06-05 09:31:54] 2025-06-05 07:26:28,392 | INFO     | sum of square deviations: 6309000152.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,395 | INFO     | sum of deviations: 7783186297.999999
[2025-06-05 09:31:54] 2025-06-05 07:26:28,395 | INFO     | mean x: 1749099612.0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,395 | INFO     | mean y: 2510446.1062271064
[2025-06-05 09:31:54] 2025-06-05 07:26:28,395 | INFO     | -- intersect: -2155290759.4683065
[2025-06-05 09:31:54] 2025-06-05 07:26:28,395 | INFO     | intersect: -2155290759.4683065
[2025-06-05 09:31:54] 2025-06-05 07:26:28,396 | INFO     | chi2: 0.0019318144998627855
[2025-06-05 09:31:54] 2025-06-05 07:26:28,396 | INFO     | -- intersect: -2155290759.4683065
[2025-06-05 09:31:54] 2025-06-05 07:26:28,396 | INFO     | current memory leak: 1.23 B/s (using 273 data points, chi2=0.00)
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | ..............................
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | . Timing measurements:
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | . get job = 0 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | . initial setup = 10 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | . payload setup = 148 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | . stage-in = 0 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | . payload execution = 18950 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,398 | INFO     | . stage-out = 4 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,399 | INFO     | . log creation = 1 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,399 | INFO     | ..............................
[2025-06-05 09:31:54] 2025-06-05 07:26:28,664 | INFO     | 
[2025-06-05 09:31:54] 2025-06-05 07:26:28,664 | INFO     | job summary report
[2025-06-05 09:31:54] 2025-06-05 07:26:28,664 | INFO     | --------------------------------------------------
[2025-06-05 09:31:54] 2025-06-05 07:26:28,664 | INFO     | PanDA job id: 6666950193
[2025-06-05 09:31:54] 2025-06-05 07:26:28,664 | INFO     | task id: 44871837
[2025-06-05 09:31:54] 2025-06-05 07:26:28,664 | INFO     | errors: (none)
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | pilot state: finished 
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | transexitcode: 0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | exeerrorcode: 0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | exeerrordiag: 
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | exitcode: 0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | exitmsg: OK
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | cpuconsumptiontime: 71688 s
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | nevents: 400
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | neventsw: 0
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | pid: 1217
[2025-06-05 09:31:54] 2025-06-05 07:26:28,665 | INFO     | pgrp: 1217
[2025-06-05 09:31:54] 2025-06-05 07:26:28,666 | INFO     | corecount: 8
[2025-06-05 09:31:54] 2025-06-05 07:26:28,666 | INFO     | event service: False
[2025-06-05 09:31:54] 2025-06-05 07:26:28,666 | INFO     | sizes: {0: 2396564, 1: 2397250, 2: 2397449, 12: 2397449, 23: 2397477, 34: 2397505, 45: 2397661, 55: 2397689, 66: 2397717, 77: 2397745, 88: 2397801, 94: 2398315, 98
[2025-06-05 09:31:54] 2025-06-05 07:26:28,666 | INFO     | --------------------------------------------------
[2025-06-05 09:31:54] 2025-06-05 07:26:28,666 | INFO     | 
[2025-06-05 09:31:54] 2025-06-05 07:26:28,666 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-06-05 09:31:54] 2025-06-05 07:26:29,156 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,157 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,158 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 09:31:54] 2025-06-05 07:26:29,159 | INFO     | job 6666950193 has completed (purged errors)
[2025-06-05 09:31:54] 2025-06-05 07:26:29,159 | INFO     | overall cleanup function is called
[2025-06-05 09:31:54] 2025-06-05 07:26:29,881 | INFO     | PID=26985 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 09:31:54] 2025-06-05 07:26:29,881 | INFO     | .. there are 9 such processes running
[2025-06-05 09:31:54] 2025-06-05 07:26:30,168 | INFO     | --- collectZombieJob: --- 10, [1217]
[2025-06-05 09:31:54] 2025-06-05 07:26:30,168 | INFO     | zombie collector waiting for pid 1217
[2025-06-05 09:31:54] 2025-06-05 07:26:30,168 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 09:31:54] 2025-06-05 07:26:30,168 | INFO     | collected zombie processes
[2025-06-05 09:31:54] 2025-06-05 07:26:30,169 | INFO     | will attempt to kill all subprocesses of pid=1217
[2025-06-05 09:31:54] 2025-06-05 07:26:30,267 | INFO     | process IDs to be killed: [1217] (in reverse order)
[2025-06-05 09:31:54] 2025-06-05 07:26:31,198 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 09:31:54] 2025-06-05 07:26:31,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 09:31:54] 2025-06-05 07:26:31,203 | INFO     | did not find any defunct processes belonging to 1217
[2025-06-05 09:31:54] 2025-06-05 07:26:31,206 | INFO     | did not find any defunct processes belonging to 1217
[2025-06-05 09:31:54] 2025-06-05 07:26:31,207 | INFO     | ready for new job
[2025-06-05 09:31:54] 2025-06-05 07:26:31,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 09:31:54] 2025-06-05 07:26:31,210 | INFO     | **************************************
[2025-06-05 09:31:54] 2025-06-05 07:26:31,210 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 09:31:54] 2025-06-05 07:26:31,210 | INFO     | **************************************
[2025-06-05 09:31:54] 2025-06-05 07:26:31,210 | INFO     | 
[2025-06-05 09:31:54] 2025-06-05 07:26:31,211 | INFO     | pilot is running in a VM
[2025-06-05 09:31:54] 2025-06-05 07:26:31,211 | INFO     | architecture information:
[2025-06-05 09:31:54] 2025-06-05 07:26:31,224 | INFO     | executing command: cat /etc/os-release
[2025-06-05 09:31:54] 2025-06-05 07:26:31,540 | INFO     | cat /etc/os-release:
[2025-06-05 09:31:54] NAME="CentOS Linux"
[2025-06-05 09:31:54] VERSION="7 (Core)"
[2025-06-05 09:31:54] ID="centos"
[2025-06-05 09:31:54] ID_LIKE="rhel fedora"
[2025-06-05 09:31:54] VERSION_ID="7"
[2025-06-05 09:31:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 09:31:54] ANSI_COLOR="0;31"
[2025-06-05 09:31:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 09:31:54] HOME_URL="https://www.centos.org/"
[2025-06-05 09:31:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 09:31:54] 
[2025-06-05 09:31:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 09:31:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 09:31:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 09:31:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 09:31:54] 
[2025-06-05 09:31:54] 2025-06-05 07:26:31,541 | INFO     | **************************************
[2025-06-05 09:31:54] 2025-06-05 07:26:32,044 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-06-05 09:31:54] 2025-06-05 07:26:32,361 | INFO     | sufficient remaining disk space (497429774336 B)
[2025-06-05 09:31:54] 2025-06-05 07:26:32,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 09:31:54] 2025-06-05 07:26:32,362 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 09:31:54] 2025-06-05 07:26:32,362 | INFO     | update_server=False
[2025-06-05 09:31:54] 2025-06-05 07:26:32,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 09:31:54] 2025-06-05 07:26:32,363 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 09:31:54] 2025-06-05 07:26:32,363 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 09:31:54] 2025-06-05 07:26:32,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 09:31:54] 2025-06-05 07:26:32,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 09:31:54] 2025-06-05 07:26:32,367 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 09:31:54] 2025-06-05 07:26:32,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 09:31:54] 2025-06-05 07:26:32,821 | INFO     | all job control threads have been joined
[2025-06-05 09:31:54] 2025-06-05 07:26:32,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:31:54] 2025-06-05 07:26:32,938 | INFO     | aborting loop
[2025-06-05 09:31:54] 2025-06-05 07:26:33,239 | INFO     | all payload control threads have been joined
[2025-06-05 09:31:54] 2025-06-05 07:26:33,273 | INFO     | all data control threads have been joined
[2025-06-05 09:31:54] 2025-06-05 07:26:33,369 | INFO     | [job] retrieve thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:33,442 | INFO     | [job] validate thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:33,549 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:31:54] 2025-06-05 07:26:33,679 | INFO     | [data] copytool_in thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:33,734 | INFO     | [payload] failed_post thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:33,827 | INFO     | [job] control thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:33,909 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:33,944 | INFO     | [job] job monitor thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,171 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,245 | INFO     | [payload] control thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,279 | INFO     | [data] control thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,374 | INFO     | [data] copytool_out thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,385 | INFO     | [payload] validate_post thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,454 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,555 | INFO     | [job] queue monitor thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:34,671 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:36,573 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 09:31:54] 2025-06-05 07:26:38,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139805269579584)>', '<ExcThread(monitor, started 139804608034560)>']
[2025-06-05 09:31:54] 2025-06-05 07:26:38,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 09:31:54] 2025-06-05 07:26:38,400 | INFO     | [monitor] control thread has ended
[2025-06-05 09:31:54] 2025-06-05 07:26:43,212 | INFO     | all workflow threads have been joined
[2025-06-05 09:31:54] 2025-06-05 07:26:43,212 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 09:31:54] 2025-06-05 07:26:43,212 | INFO     | traces error code: 0
[2025-06-05 09:31:54] 2025-06-05 07:26:43,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 09:31:54] 2025-06-05 07:26:43,623 [wrapper] ==== pilot stdout END ====
[2025-06-05 09:31:54] 2025-06-05 07:26:43,697 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 09:31:54] 2025-06-05 07:26:43,824 [wrapper] pilotpid: 26985
[2025-06-05 09:31:54] 2025-06-05 07:26:43,885 [wrapper] Pilot exit status: 0
[2025-06-05 09:31:54] 2025-06-05 07:26:44,218 [wrapper] pandaids: 6666950193
[2025-06-05 09:31:54] 2025-06-05 07:26:45,136 [wrapper] cleanup supervisor_pilot  4576 26986
[2025-06-05 09:31:54] 2025-06-05 07:26:45,210 [wrapper] Test setup, not cleaning
[2025-06-05 09:31:54] 2025-06-05 07:26:45,295 [wrapper] apfmon messages muted
[2025-06-05 09:31:54] 2025-06-05 07:26:45,330 [wrapper] ==== wrapper stdout END ====
[2025-06-05 09:31:54] 2025-06-05 07:26:45,353 [wrapper] ==== wrapper stderr END ====
[2025-06-05 09:31:54]  *** Error codes and diagnostics ***
[2025-06-05 09:31:54]     "exeErrorCode": 0,
[2025-06-05 09:31:54]     "exeErrorDiag": "",
[2025-06-05 09:31:54]     "pilotErrorCode": 0,
[2025-06-05 09:31:54]     "pilotErrorDiag": "",
[2025-06-05 09:31:54]  *** Listing of results directory ***
[2025-06-05 09:31:54] total 422580
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc    495897 May 27 14:18 pilot3.tar.gz
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc      5111 May 27 14:22 queuedata.json
[2025-06-05 09:31:54] -rwx------. 1 boinc boinc     37140 May 27 14:22 runpilot2-wrapper.sh
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc       100 Jun  5 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 09:31:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 03:59 run_atlas
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc       105 Jun  5 03:59 job.xml
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc      6393 Jun  5 03:59 init_data.xml
[2025-06-05 09:31:54] -rw-r--r--. 2 boinc boinc 226658990 Jun  5 03:59 EVNT.44871834._002650.pool.root.1
[2025-06-05 09:31:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 03:59 start_atlas.sh
[2025-06-05 09:31:54] drwxrwx--x. 2 boinc boinc        68 Jun  5 03:59 shared
[2025-06-05 09:31:54] -rw-r--r--. 2 boinc boinc    508876 Jun  5 03:59 input.tar.gz
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc         0 Jun  5 03:59 boinc_lockfile
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc      2559 Jun  5 04:00 pandaJob.out
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc    987109 Jun  5 04:03 agis_schedconf.cvmfs.json
[2025-06-05 09:31:54] drwx------. 4 boinc boinc      4096 Jun  5 04:03 pilot3
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc 198058071 Jun  5 09:23 HITS.44871837._067308.pool.root.1
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc       531 Jun  5 09:23 boinc_task_state.xml
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc      1016 Jun  5 09:24 memory_monitor_summary.json
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc   1598969 Jun  5 09:24 agis_ddmendpoints.agis.ALL.json
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc    440145 Jun  5 09:24 log.44871837._067308.job.log.tgz.1
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc        95 Jun  5 09:25 pilot_heartbeat.json
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc      7692 Jun  5 09:26 heartbeat.json
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc      4540 Jun  5 09:26 pilotlog.txt
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc   1654821 Jun  5 09:26 log.44871837._067308.job.log.1
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc       357 Jun  5 09:26 output.list
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc       620 Jun  5 09:26 runtime_log
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc   2109440 Jun  5 09:26 result.tar.gz
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc      8673 Jun  5 09:26 runtime_log.err
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc       657 Jun  5 09:26 NAJLDmyU8d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRPZKDmfd16tn.diag
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc      8192 Jun  5 09:31 boinc_mmap_file
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc        28 Jun  5 09:31 wrapper_checkpoint.txt
[2025-06-05 09:31:54] -rw-r--r--. 1 boinc boinc     20634 Jun  5 09:31 stderr.txt
[2025-06-05 09:31:54] HITS file was successfully produced:
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc 198058071 Jun  5 09:23 shared/HITS.pool.root.1
[2025-06-05 09:31:54]  *** Contents of shared directory: ***
[2025-06-05 09:31:54] total 417344
[2025-06-05 09:31:54] -rw-r--r--. 2 boinc boinc 226658990 Jun  5 03:59 ATLAS.root_0
[2025-06-05 09:31:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 03:59 start_atlas.sh
[2025-06-05 09:31:54] -rw-r--r--. 2 boinc boinc    508876 Jun  5 03:59 input.tar.gz
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc 198058071 Jun  5 09:23 HITS.pool.root.1
[2025-06-05 09:31:54] -rw-------. 1 boinc boinc   2109440 Jun  5 09:26 result.tar.gz
09:31:56 (19408): run_atlas exited; CPU time 71925.740636
09:31:56 (19408): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN