Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:18:29 (1313649): wrapper (7.7.26015): starting
13:18:29 (1313649): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 13:18:29] Arguments: --nthreads 12
[2025-06-04 13:18:29] Threads: 12
[2025-06-04 13:18:29] Checking for CVMFS
[2025-06-04 13:18:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:18:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:18:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:18:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:18:29] 2.12.6.0 665990 23593 424512 146789 1 14 30663951 32935937 6294 16776704 1 82217980 99.624 78860333 33882 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 13:18:29] CVMFS is ok
[2025-06-04 13:18:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 13:18:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 13:18:30] Further information can be found at the LHC@home message board.
[2025-06-04 13:18:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:18:30] Checking for apptainer binary...
[2025-06-04 13:18:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:18:30] Running /usr/bin/apptainer --version
[2025-06-04 13:18:30] apptainer version 1.4.1-1.el9
[2025-06-04 13:18:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:18:30] c6-6-39-1.aglt2.org
[2025-06-04 13:18:30] apptainer works
[2025-06-04 13:18:30] Set ATHENA_PROC_NUMBER=12
[2025-06-04 13:18:30] Set ATHENA_CORE_NUMBER=12
[2025-06-04 13:18:30] Starting ATLAS job with PandaID=6679901539
[2025-06-04 13:18:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:00:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:00:02]  guid=0ae50c32-abc0-40d5-be14-4ffd9c3b2462
[2025-06-04 14:00:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 14:00:02]  is_altstaged=None
[2025-06-04 14:00:02]  is_tar=False
[2025-06-04 14:00:02]  lfn=log.45006595._056839.job.log.tgz.1
[2025-06-04 14:00:02]  mtime=0
[2025-06-04 14:00:02]  protocol_id=None
[2025-06-04 14:00:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 14:00:02]  replicas=None
[2025-06-04 14:00:02]  scope=mc23_13p6TeV
[2025-06-04 14:00:02]  status=None
[2025-06-04 14:00:02]  status_code=0
[2025-06-04 14:00:02]  storage_token=
[2025-06-04 14:00:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679901539/log.45006595._056839.job.log.tgz.1
[2025-06-04 14:00:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/17/log.45006595._056839.job.log.tgz.1
[2025-06-04 14:00:02]  workdir=None
[2025-06-04 14:00:02] ]
[2025-06-04 14:00:02] 2025-06-04 17:59:38,037 | INFO     | transferring file log.45006595._056839.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679901539/log.45006595._056839.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 14:00:02] 2025-06-04 17:59:38,037 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679901539/log.45006595._056839.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._056839.job
[2025-06-04 14:00:02] 2025-06-04 17:59:38,049 | INFO     | adding to output.list: log.45006595._056839.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/17/log.45006595._056839.job.log.tg
[2025-06-04 14:00:02] 2025-06-04 17:59:38,050 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 14:00:02] 2025-06-04 17:59:38,050 | INFO     | summary of transferred files:
[2025-06-04 14:00:02] 2025-06-04 17:59:38,050 | INFO     |  -- lfn=log.45006595._056839.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 14:00:02] 2025-06-04 17:59:38,050 | INFO     | stage-out finished correctly
[2025-06-04 14:00:02] 2025-06-04 17:59:38,465 | INFO     | monitor loop #187: job 0:6679901539 is in state 'finished'
[2025-06-04 14:00:02] 2025-06-04 17:59:38,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:00:02] 2025-06-04 17:59:39,110 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 14:00:02] 2025-06-04 17:59:39,882 | INFO     | job 6679901539 has state=finished
[2025-06-04 14:00:02] 2025-06-04 17:59:39,882 | INFO     | preparing for final server update for job 6679901539 in state='finished'
[2025-06-04 14:00:02] 2025-06-04 17:59:39,933 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 14:00:02] 2025-06-04 17:59:39,933 | INFO     | this job has now completed (state=finished)
[2025-06-04 14:00:02] 2025-06-04 17:59:39,933 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 14:00:02] 2025-06-04 17:59:39,933 | INFO     | log transfer has been attempted: DONE
[2025-06-04 14:00:02] 2025-06-04 17:59:39,933 | INFO     | job 6679901539 has finished - writing final server update
[2025-06-04 14:00:02] 2025-06-04 17:59:39,934 | INFO     | total number of processed events: 400 (read)
[2025-06-04 14:00:02] 2025-06-04 17:59:39,950 | INFO     | executing command: lscpu
[2025-06-04 14:00:02] 2025-06-04 17:59:40,025 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 14:00:02] 2025-06-04 17:59:40,969 | INFO     | monitor loop #188: job 0:6679901539 is in state 'finished'
[2025-06-04 14:00:02] 2025-06-04 17:59:40,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:00:02] 2025-06-04 17:59:42,488 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 14:00:02] 2025-06-04 17:59:42,488 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679901539/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 14:00:02] 2025-06-04 17:59:42,489 | INFO     | extracted standard info from prmon json
[2025-06-04 14:00:02] 2025-06-04 17:59:42,489 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:00:02] 2025-06-04 17:59:42,489 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:00:02] 2025-06-04 17:59:42,489 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:00:02] 2025-06-04 17:59:42,489 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:00:02] 2025-06-04 17:59:42,490 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:00:02] 2025-06-04 17:59:42,490 | INFO     | sum of square deviations: 11133232.0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,490 | INFO     | sum of deviations: 211037735.0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,490 | INFO     | mean x: 1749058823.0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,490 | INFO     | mean y: 2819648.090909091
[2025-06-04 14:00:02] 2025-06-04 17:59:42,490 | INFO     | -- intersect: -33151740715.66383
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | intersect: -33151740715.66383
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | chi2: 0.0008385535352462302
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | -- intersect: -33151740715.66383
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | current memory leak: 18.96 B/s (using 33 data points, chi2=0.00)
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | ..............................
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . Timing measurements:
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . get job = 0 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . initial setup = 2 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . payload setup = 5 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . stage-in = 0 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . payload execution = 2435 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . stage-out = 0 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | . log creation = 0 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,491 | INFO     | ..............................
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | 
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | job summary report
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | --------------------------------------------------
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | PanDA job id: 6679901539
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | task id: 45006595
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | errors: (none)
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | pilot state: finished 
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | transexitcode: 0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,788 | INFO     | exeerrorcode: 0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | exeerrordiag: 
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | exitcode: 0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | exitmsg: OK
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | cpuconsumptiontime: 26414 s
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | nevents: 400
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | neventsw: 0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | pid: 1324365
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | pgrp: 1324365
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | corecount: 12
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | event service: False
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | sizes: {0: 2397291, 3: 2397497, 11: 2397525, 2444: 2422626, 2445: 2431567, 2446: 2431623, 2449: 2431921}
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | --------------------------------------------------
[2025-06-04 14:00:02] 2025-06-04 17:59:42,789 | INFO     | 
[2025-06-04 14:00:02] 2025-06-04 17:59:42,790 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,805 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | job 6679901539 has completed (purged errors)
[2025-06-04 14:00:02] 2025-06-04 17:59:42,806 | INFO     | overall cleanup function is called
[2025-06-04 14:00:02] 2025-06-04 17:59:43,813 | INFO     | --- collectZombieJob: --- 10, [1324365]
[2025-06-04 14:00:02] 2025-06-04 17:59:43,814 | INFO     | zombie collector waiting for pid 1324365
[2025-06-04 14:00:02] 2025-06-04 17:59:43,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:00:02] 2025-06-04 17:59:43,814 | INFO     | collected zombie processes
[2025-06-04 14:00:02] 2025-06-04 17:59:43,814 | INFO     | will attempt to kill all subprocesses of pid=1324365
[2025-06-04 14:00:02] 2025-06-04 17:59:44,124 | INFO     | process IDs to be killed: [1324365] (in reverse order)
[2025-06-04 14:00:02] 2025-06-04 17:59:44,199 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:00:02] 2025-06-04 17:59:44,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:00:02] 2025-06-04 17:59:44,207 | INFO     | did not find any defunct processes belonging to 1324365
[2025-06-04 14:00:02] 2025-06-04 17:59:44,213 | INFO     | did not find any defunct processes belonging to 1324365
[2025-06-04 14:00:02] 2025-06-04 17:59:44,213 | INFO     | ready for new job
[2025-06-04 14:00:02] 2025-06-04 17:59:44,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:00:02] 2025-06-04 17:59:44,214 | INFO     | **************************************
[2025-06-04 14:00:02] 2025-06-04 17:59:44,214 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:00:02] 2025-06-04 17:59:44,214 | INFO     | **************************************
[2025-06-04 14:00:02] 2025-06-04 17:59:44,214 | INFO     | 
[2025-06-04 14:00:02] 2025-06-04 17:59:44,229 | INFO     | architecture information:
[2025-06-04 14:00:02] 2025-06-04 17:59:44,229 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:00:02] 2025-06-04 17:59:44,239 | INFO     | cat /etc/os-release:
[2025-06-04 14:00:02] NAME="CentOS Linux"
[2025-06-04 14:00:02] VERSION="7 (Core)"
[2025-06-04 14:00:02] ID="centos"
[2025-06-04 14:00:02] ID_LIKE="rhel fedora"
[2025-06-04 14:00:02] VERSION_ID="7"
[2025-06-04 14:00:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:00:02] ANSI_COLOR="0;31"
[2025-06-04 14:00:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:00:02] HOME_URL="https://www.centos.org/"
[2025-06-04 14:00:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:00:02] 
[2025-06-04 14:00:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:00:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:00:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:00:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:00:02] 
[2025-06-04 14:00:02] 2025-06-04 17:59:44,239 | INFO     | **************************************
[2025-06-04 14:00:02] 2025-06-04 17:59:44,742 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 14:00:02] 2025-06-04 17:59:44,760 | INFO     | sufficient remaining disk space (76374081536 B)
[2025-06-04 14:00:02] 2025-06-04 17:59:44,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:00:02] 2025-06-04 17:59:44,760 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:00:02] 2025-06-04 17:59:44,760 | INFO     | update_server=False
[2025-06-04 14:00:02] 2025-06-04 17:59:44,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:00:02] 2025-06-04 17:59:44,761 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 14:00:02] 2025-06-04 17:59:44,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:00:02] 2025-06-04 17:59:44,761 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:00:02] 2025-06-04 17:59:44,762 | INFO     | aborting loop
[2025-06-04 14:00:02] 2025-06-04 17:59:44,762 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:00:02] 2025-06-04 17:59:44,762 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:00:02] 2025-06-04 17:59:45,088 | INFO     | all data control threads have been joined
[2025-06-04 14:00:02] 2025-06-04 17:59:45,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:00:02] 2025-06-04 17:59:45,766 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:45,767 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:45,796 | INFO     | all payload control threads have been joined
[2025-06-04 14:00:02] 2025-06-04 17:59:45,913 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:45,978 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:46,009 | INFO     | all job control threads have been joined
[2025-06-04 14:00:02] 2025-06-04 17:59:46,093 | INFO     | [data] control thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:46,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:00:02] 2025-06-04 17:59:46,481 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:46,802 | INFO     | [payload] control thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:46,869 | INFO     | [job] validate thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:47,014 | INFO     | [job] control thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:47,057 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:47,125 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:47,187 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:47,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:00:02] 2025-06-04 17:59:48,113 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:48,555 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:49,228 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:55,065 | INFO     | job.realtimelogging is not enabled
[2025-06-04 14:00:02] 2025-06-04 17:59:56,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:00:02] 2025-06-04 17:59:57,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006358378304)>', '<ExcThread(monitor, started 140005699729152)>']
[2025-06-04 14:00:02] 2025-06-04 17:59:57,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:00:02] 2025-06-04 17:59:57,823 | INFO     | [monitor] control thread has ended
[2025-06-04 14:00:02] 2025-06-04 18:00:02,680 | INFO     | all workflow threads have been joined
[2025-06-04 14:00:02] 2025-06-04 18:00:02,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:00:02] 2025-06-04 18:00:02,681 | INFO     | traces error code: 0
[2025-06-04 14:00:02] 2025-06-04 18:00:02,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:00:02] 2025-06-04 18:00:02,807 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:00:02] 2025-06-04 18:00:02,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:00:02] 2025-06-04 18:00:02,810 [wrapper] pilotpid: 1317296
[2025-06-04 14:00:02] 2025-06-04 18:00:02,812 [wrapper] Pilot exit status: 0
[2025-06-04 14:00:02] 2025-06-04 18:00:02,818 [wrapper] pandaids: 6679901539
[2025-06-04 14:00:02] 2025-06-04 18:00:02,855 [wrapper] cleanup supervisor_pilot 1395422 1317297
[2025-06-04 14:00:02] 2025-06-04 18:00:02,857 [wrapper] Test setup, not cleaning
[2025-06-04 14:00:02] 2025-06-04 18:00:02,859 [wrapper] apfmon messages muted
[2025-06-04 14:00:02] 2025-06-04 18:00:02,861 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:00:02] 2025-06-04 18:00:02,863 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:00:02]  *** Error codes and diagnostics ***
[2025-06-04 14:00:02]     "exeErrorCode": 0,
[2025-06-04 14:00:02]     "exeErrorDiag": "",
[2025-06-04 14:00:02]     "pilotErrorCode": 0,
[2025-06-04 14:00:02]     "pilotErrorDiag": "",
[2025-06-04 14:00:02]  *** Listing of results directory ***
[2025-06-04 14:00:02] total 389556
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 12:57 pilot3.tar.gz
[2025-06-04 14:00:02] -rwx------. 1 boincer umatlas     37140 Jun  4 13:17 runpilot2-wrapper.sh
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 13:17 queuedata.json
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas       100 Jun  4 13:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:00:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 13:18 run_atlas
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas       105 Jun  4 13:18 job.xml
[2025-06-04 14:00:02] -rw-r--r--. 2 boincer umatlas 213430907 Jun  4 13:18 EVNT.45006593._002188.pool.root.1
[2025-06-04 14:00:02] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 13:18 start_atlas.sh
[2025-06-04 14:00:02] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 13:18 shared
[2025-06-04 14:00:02] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 13:18 input.tar.gz
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas         0 Jun  4 13:18 boinc_lockfile
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 13:18 pandaJob.out
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas    990984 Jun  4 13:18 agis_schedconf.cvmfs.json
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas   1598969 Jun  4 13:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:00:02] drwx------. 4 boincer umatlas      4096 Jun  4 13:18 pilot3
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas      6842 Jun  4 13:54 init_data.xml
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas 180401073 Jun  4 13:59 HITS.45006595._056839.pool.root.1
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas       529 Jun  4 13:59 boinc_task_state.xml
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas        95 Jun  4 13:59 pilot_heartbeat.json
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas      1033 Jun  4 13:59 memory_monitor_summary.json
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas    349689 Jun  4 13:59 log.45006595._056839.job.log.tgz.1
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas      7710 Jun  4 13:59 heartbeat.json
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas        27 Jun  4 13:59 wrapper_checkpoint.txt
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 13:59 boinc_mmap_file
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas      4548 Jun  4 14:00 pilotlog.txt
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas    269143 Jun  4 14:00 log.45006595._056839.job.log.1
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas       357 Jun  4 14:00 output.list
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas       620 Jun  4 14:00 runtime_log
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas    634880 Jun  4 14:00 result.tar.gz
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 14:00 runtime_log.err
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas       652 Jun  4 14:00 KMxNDmev6g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmh1nKDm3kJfVm.diag
[2025-06-04 14:00:02] -rw-r--r--. 1 boincer umatlas     21294 Jun  4 14:00 stderr.txt
[2025-06-04 14:00:02] HITS file was successfully produced:
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas 180401073 Jun  4 13:59 shared/HITS.pool.root.1
[2025-06-04 14:00:02]  *** Contents of shared directory: ***
[2025-06-04 14:00:02] total 385752
[2025-06-04 14:00:02] -rw-r--r--. 2 boincer umatlas 213430907 Jun  4 13:18 ATLAS.root_0
[2025-06-04 14:00:02] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 13:18 start_atlas.sh
[2025-06-04 14:00:02] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 13:18 input.tar.gz
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas 180401073 Jun  4 13:59 HITS.pool.root.1
[2025-06-04 14:00:02] -rw-------. 1 boincer umatlas    634880 Jun  4 14:00 result.tar.gz
14:00:04 (1313649): run_atlas exited; CPU time 26446.360773
14:00:04 (1313649): called boinc_finish(0)

</stderr_txt>
]]>

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