Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 18:07:21 (6896): Detected: vboxwrapper 26206
2025-06-05 18:07:21 (6896): Detected: BOINC client v7.16.5
2025-06-05 18:07:21 (6896): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-06-05 18:07:21 (6896): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 18:07:22 (6896): Create VM. (boinc_f9aef4945fdb549f, slot#6)
2025-06-05 18:07:23 (6896): Setting Memory Size for VM. (4400MB)
2025-06-05 18:07:23 (6896): Setting CPU Count for VM. (4)
2025-06-05 18:07:23 (6896): Setting Chipset Options for VM.
2025-06-05 18:07:23 (6896): Setting Graphics Controller Options for VM.
2025-06-05 18:07:24 (6896): Setting Boot Options for VM.
2025-06-05 18:07:24 (6896): Setting Network Configuration for NAT.
2025-06-05 18:07:24 (6896): Enabling VM Network Access.
2025-06-05 18:07:24 (6896): Disabling USB Support for VM.
2025-06-05 18:07:25 (6896): Disabling COM Port Support for VM.
2025-06-05 18:07:25 (6896): Disabling LPT Port Support for VM.
2025-06-05 18:07:25 (6896): Disabling Audio Support for VM.
2025-06-05 18:07:25 (6896): Disabling Clipboard Support for VM.
2025-06-05 18:07:26 (6896): Disabling Drag and Drop Support for VM.
2025-06-05 18:07:26 (6896): Adding storage controller(s) to VM.
2025-06-05 18:07:26 (6896): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 18:07:27 (6896): Adding VirtualBox Guest Additions to VM.
2025-06-05 18:07:27 (6896): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 18:07:27 (6896): forwarding host port 55936 to guest port 80
2025-06-05 18:07:27 (6896): Enabling remote desktop for VM.
2025-06-05 18:07:28 (6896): Enabling shared directory for VM.
2025-06-05 18:07:28 (6896): Starting VM using VBoxManage interface. (boinc_f9aef4945fdb549f, slot#6)
2025-06-05 18:07:33 (6896): Successfully started VM. (PID = '8276')
2025-06-05 18:07:33 (6896): Reporting VM Process ID to BOINC.
2025-06-05 18:07:33 (6896): Guest Log: BIOS: VirtualBox 5.2.44
2025-06-05 18:07:33 (6896): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 18:07:33 (6896): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 18:07:33 (6896): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 18:07:33 (6896): Detected: Web Application Enabled (http://localhost:55936)
2025-06-05 18:07:33 (6896): Detected: Remote Desktop Enabled (localhost:55937)
2025-06-05 18:07:33 (6896): Preference change detected
2025-06-05 18:07:33 (6896): Setting CPU throttle for VM. (100%)
2025-06-05 18:07:33 (6896): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 18:07:35 (6896): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 18:07:35 (6896): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 18:07:38 (6896): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 18:07:38 (6896): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 18:07:38 (6896): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 18:07:44 (6896): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 18:07:44 (6896): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 18:07:50 (6896): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.000155 main     Log opened 2025-06-05T18:07:47.719359000Z
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.000249 main     OS Product: Linux
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.000311 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.000339 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.000360 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.000361 main     Process ID: 1301
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.000361 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 18:07:50 (6896): Guest Log: 00:00:00.001316 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 18:07:50 (6896): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 18:07:50 (6896): Guest Log: [INFO] Mounting shared directory
2025-06-05 18:07:50 (6896): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 18:07:55 (6896): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 18:07:55 (6896): Guest Log: [INFO] Detected branch: prod
2025-06-05 18:07:56 (6896): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 18:07:56 (6896): Guest Log: Copying input files
2025-06-05 18:07:57 (6896): Guest Log: Copied input files into RunAtlas.
2025-06-05 18:07:57 (6896): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 18:07:57 (6896): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 18:07:57 (6896): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 18:07:57 (6896): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 18:08:00 (6896): Guest Log: 00:00:10.008554 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 175 072 000ns (GuestNow=1 749 136 079 546 818 000 ns GuestLast=1 749 146 867 721 890 000 ns fSetTimeLastLoop=true )
2025-06-05 18:08:06 (6896): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 18:08:07 (6896): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 18:08:07 (6896): Guest Log: 2.6.3.0 1580 0 30172 146822 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 18:08:08 (6896): Guest Log: copied the webapp to /var/www
2025-06-05 18:08:08 (6896): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-05 18:08:08 (6896): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-05 18:08:10 (6896): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 18:08:10 (6896): Guest Log:  *** Starting ATLAS job. (PandaID=6678491641 taskID=45006595) ***
2025-06-05 19:47:35 (6896): Status Report: Elapsed Time: '6000.000000'
2025-06-05 19:47:35 (6896): Status Report: CPU Time: '16544.656250'
2025-06-05 21:27:39 (6896): Status Report: Elapsed Time: '12000.000000'
2025-06-05 21:27:39 (6896): Status Report: CPU Time: '39883.468750'
2025-06-05 21:34:27 (6896): Guest Log:  *** Job finished ***
2025-06-05 21:34:27 (6896): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:13,718 | INFO     | [payload] control thread has finished
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:14,436 | INFO     | [data] copytool_out thread has finished
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:16,949 | INFO     | [data] queue_monitor thread has finished
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:17,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980833531712)>', '<ExcThread(monitor, started 139980089321216)>']
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:18,305 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:18,305 | INFO     | [monitor] control thread has ended
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,527 | INFO     | all workflow threads have been joined
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,528 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,528 | INFO     | traces error code: 0
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,528 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,625 [wrapper] ==== pilot stdout END ====
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,630 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,635 [wrapper] pilotpid: 5938
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:22,640 [wrapper] Pilot exit status: 0
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:25,833 [wrapper] pandaids: 6678491641
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:25,863 [wrapper] cleanup supervisor_pilot  8822 5939
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:25,867 [wrapper] Test setup, not cleaning
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:25,872 [wrapper] apfmon messages muted
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:25,877 [wrapper] ==== wrapper stdout END ====
2025-06-05 21:34:27 (6896): Guest Log: 2025-06-05 18:34:25,881 [wrapper] ==== wrapper stderr END ====
2025-06-05 21:34:27 (6896): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 21:34:27 (6896): Guest Log:     "exeErrorCode": 0,
2025-06-05 21:34:27 (6896): Guest Log:     "exeErrorDiag": "",
2025-06-05 21:34:27 (6896): Guest Log:     "pilotErrorCode": 0,
2025-06-05 21:34:27 (6896): Guest Log:     "pilotErrorDiag": "",
2025-06-05 21:34:27 (6896): Guest Log:  *** Listing of results directory ***
2025-06-05 21:34:27 (6896): Guest Log: total 181468
2025-06-05 21:34:27 (6896): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 07:34 pilot3.tar.gz
2025-06-05 21:34:27 (6896): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 07:46 runpilot2-wrapper.sh
2025-06-05 21:34:27 (6896): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 07:46 queuedata.json
2025-06-05 21:34:27 (6896): Guest Log: -rwxr-xr-x. 1 atlas atlas      8878 Jun  5 15:07 init_data.xml
2025-06-05 21:34:27 (6896): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Jun  5 15:07 input.tar.gz
2025-06-05 21:34:27 (6896): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 15:07 start_atlas.sh
2025-06-05 21:34:27 (6896): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 15:07 EVNT.45006593._000577.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 21:34:27 (6896): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  5 15:08 pandaJob.out
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas    983210 Jun  5 15:15 agis_schedconf.cvmfs.json
2025-06-05 21:34:27 (6896): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 15:15 pilot3
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 18:33 pilot_heartbeat.json
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas 179392501 Jun  5 18:33 HITS.45006595._055375.pool.root.1
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas      1031 Jun  5 18:33 memory_monitor_summary.json
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 18:34 agis_ddmendpoints.agis.ALL.json
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas    315162 Jun  5 18:34 log.45006595._055375.job.log.tgz.1
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas      7733 Jun  5 18:34 heartbeat.json
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  5 18:34 pilotlog.txt
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas   1021840 Jun  5 18:34 log.45006595._055375.job.log.1
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 18:34 output.list
2025-06-05 21:34:27 (6896): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 18:34 runtime_log
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas   1351680 Jun  5 18:34 result.tar.gz
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas       671 Jun  5 18:34 sFoNDmG0xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkinKDm2TJgLm.diag
2025-06-05 21:34:27 (6896): Guest Log: -rw-r--r--. 1 atlas atlas      8635 Jun  5 18:34 runtime_log.err
2025-06-05 21:34:27 (6896): Guest Log: Looking for outputfile HITS.45006595._055375.pool.root.1
2025-06-05 21:34:27 (6896): Guest Log: HITS file was successfully produced
2025-06-05 21:34:27 (6896): Guest Log: -rw-------. 1 atlas atlas 179392501 Jun  5 18:33 /home/atlas/RunAtlas/HITS.45006595._055375.pool.root.1
2025-06-05 21:34:28 (6896): Guest Log: Successfully finished the ATLAS job!
2025-06-05 21:34:28 (6896): Guest Log: Copying the results back to the shared directory!
2025-06-05 21:34:28 (6896): Guest Log:  *** Contents of shared directory: ***
2025-06-05 21:34:28 (6896): Guest Log: total 384856
2025-06-05 21:34:28 (6896): Guest Log: -rwxrwxrwx. 1 root root 212807526 Jun  5 15:07 ATLAS.root_0
2025-06-05 21:34:28 (6896): Guest Log: -rwxrwxrwx. 1 root root 179392501 Jun  5 18:34 HITS.pool.root.1
2025-06-05 21:34:28 (6896): Guest Log: -rwxrwxrwx. 1 root root      8878 Jun  5 15:07 init_data.xml
2025-06-05 21:34:28 (6896): Guest Log: -rwxrwxrwx. 1 root root    508887 Jun  4 17:06 input.tar.gz
2025-06-05 21:34:28 (6896): Guest Log: -rwxrwxrwx. 1 root root   1351680 Jun  5 18:34 result.tar.gz
2025-06-05 21:34:28 (6896): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 17:06 start_atlas.sh
2025-06-05 21:34:28 (6896): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 21:34:28 (6896): VM Completion File Detected.
2025-06-05 21:34:28 (6896): Powering off VM.
2025-06-05 21:34:28 (6896): Successfully stopped VM.
2025-06-05 21:34:28 (6896): Deregistering VM. (boinc_f9aef4945fdb549f, slot#6)
2025-06-05 21:34:29 (6896): Removing network bandwidth throttle group from VM.
2025-06-05 21:34:29 (6896): Removing VM from VirtualBox.
21:34:34 (6896): called boinc_finish(0)

</stderr_txt>
]]>

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