Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:59:00 (6157): wrapper (7.7.26015): starting
12:59:00 (6157): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 12:59:00] Arguments: --nthreads 4
[2025-06-04 12:59:00] Threads: 4
[2025-06-04 12:59:00] Checking for CVMFS
[2025-06-04 12:59:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:59:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:59:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:59:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:59:00] 2.11.2.0 2943 452668 97972 146788 3 55 16125456 20275201 1 130560 0 48371552 99.976 20580845 20176 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 12:59:00] CVMFS is ok
[2025-06-04 12:59:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:59:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 12:59:00] Further information can be found at the LHC@home message board.
[2025-06-04 12:59:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:59:00] Checking for apptainer binary...
[2025-06-04 12:59:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 12:59:00] Running /usr/bin/apptainer --version
[2025-06-04 12:59:00] apptainer version 1.3.2-1.el7
[2025-06-04 12:59:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:59:01] c-205-34.aglt2.org
[2025-06-04 12:59:01] apptainer works
[2025-06-04 12:59:01] Set ATHENA_PROC_NUMBER=4
[2025-06-04 12:59:01] Set ATHENA_CORE_NUMBER=4
[2025-06-04 12:59:01] Starting ATLAS job with PandaID=6667729892
[2025-06-04 12:59:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:56:45]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:56:45] 2025-06-04 18:56:20,878 | INFO     | log transfer has been attempted: DONE
[2025-06-04 14:56:45] 2025-06-04 18:56:20,878 | INFO     | job 6667729892 has finished - writing final server update
[2025-06-04 14:56:45] 2025-06-04 18:56:20,878 | INFO     | total number of processed events: 400 (read)
[2025-06-04 14:56:45] 2025-06-04 18:56:20,879 | INFO     | executing command: lscpu
[2025-06-04 14:56:45] 2025-06-04 18:56:20,904 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 14:56:45] 2025-06-04 18:56:23,307 | INFO     | monitor loop #530: job 0:6667729892 is in state 'finished'
[2025-06-04 14:56:45] 2025-06-04 18:56:23,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:56:45] 2025-06-04 18:56:24,899 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 14:56:45] 2025-06-04 18:56:24,900 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667729892/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 14:56:45] 2025-06-04 18:56:24,900 | INFO     | extracted standard info from prmon json
[2025-06-04 14:56:45] 2025-06-04 18:56:24,900 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:56:45] 2025-06-04 18:56:24,900 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:56:45] 2025-06-04 18:56:24,900 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:56:45] 2025-06-04 18:56:24,900 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | sum of square deviations: 471562330.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | sum of deviations: -1508927415.0000007
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | mean x: 1749059849.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | mean y: 2350883.547826087
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | -- intersect: 5599075194.90633
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | intersect: 5599075194.90633
[2025-06-04 14:56:45] 2025-06-04 18:56:24,902 | INFO     | chi2: 1.1993667754086568
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | sum of square deviations: 412686807.5
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | sum of deviations: -1397469099.499999
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | mean x: 1749059696.5
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | mean y: 2351172.4454545453
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | -- intersect: 5925140160.653169
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | intersect: 5925140160.653169
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | chi2: 1.1989376670062981
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | current chi2=1.1989376670062981 (change=0.03577791307520995 %)
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | right removable region: 109
[2025-06-04 14:56:45] 2025-06-04 18:56:24,903 | INFO     | sum of square deviations: 412686807.5
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | sum of deviations: -9641245810.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | mean x: 1749060001.5
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | mean y: 2371050.8181818184
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | -- intersect: 40864150745.33984
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | intersect: 40864150745.33984
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | chi2: 0.11211036682390384
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | current chi2=0.11211036682390384 (change=90.65253689508742 %)
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | sum of square deviations: 358927660.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | sum of deviations: -5894470138.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | mean x: 1749060154.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | mean y: 2360410.6380952382
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | -- intersect: 28726206456.157913
[2025-06-04 14:56:45] 2025-06-04 18:56:24,904 | INFO     | intersect: 28726206456.157913
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | chi2: 0.09090788618772233
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | current chi2=0.09090788618772233 (change=18.912149908032212 %)
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | left removable region: 20
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | sum of square deviations: 218571540.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | sum of deviations: 1078303344.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | mean x: 1749060276.0
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | mean y: 2336849.6741573033
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | -- intersect: -8626497190.056555
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | intersect: -8626497190.056555
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | chi2: 0.0002893250545347384
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | -- intersect: -8626497190.056555
[2025-06-04 14:56:45] 2025-06-04 18:56:24,905 | INFO     | current memory leak: 4.93 B/s (using 89 data points, chi2=0.00)
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | ..............................
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . Timing measurements:
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . get job = 0 s
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . initial setup = 2 s
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . payload setup = 5 s
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . stage-in = 0 s
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . payload execution = 7004 s
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . stage-out = 0 s
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | . log creation = 0 s
[2025-06-04 14:56:45] 2025-06-04 18:56:24,906 | INFO     | ..............................
[2025-06-04 14:56:45] 2025-06-04 18:56:25,100 | INFO     | 
[2025-06-04 14:56:45] 2025-06-04 18:56:25,100 | INFO     | job summary report
[2025-06-04 14:56:45] 2025-06-04 18:56:25,100 | INFO     | --------------------------------------------------
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | PanDA job id: 6667729892
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | task id: 44871837
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | errors: (none)
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | pilot state: finished 
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | transexitcode: 0
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | exeerrorcode: 0
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | exeerrordiag: 
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | exitcode: 0
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | exitmsg: OK
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | cpuconsumptiontime: 27199 s
[2025-06-04 14:56:45] 2025-06-04 18:56:25,101 | INFO     | nevents: 400
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | neventsw: 0
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | pid: 16517
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | pgrp: 16517
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | corecount: 4
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | event service: False
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | sizes: {0: 2397171, 1: 2397370, 4: 2397576, 11: 2397604, 7013: 2424810, 7014: 2433934, 7017: 2433934, 7022: 2434104}
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | --------------------------------------------------
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | 
[2025-06-04 14:56:45] 2025-06-04 18:56:25,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 14:56:45] 2025-06-04 18:56:25,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:56:45] 2025-06-04 18:56:25,121 | INFO     | job 6667729892 has completed (purged errors)
[2025-06-04 14:56:45] 2025-06-04 18:56:25,122 | INFO     | overall cleanup function is called
[2025-06-04 14:56:45] 2025-06-04 18:56:26,129 | INFO     | --- collectZombieJob: --- 10, [16517]
[2025-06-04 14:56:45] 2025-06-04 18:56:26,129 | INFO     | zombie collector waiting for pid 16517
[2025-06-04 14:56:45] 2025-06-04 18:56:26,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:56:45] 2025-06-04 18:56:26,129 | INFO     | collected zombie processes
[2025-06-04 14:56:45] 2025-06-04 18:56:26,129 | INFO     | will attempt to kill all subprocesses of pid=16517
[2025-06-04 14:56:45] 2025-06-04 18:56:26,163 | INFO     | process IDs to be killed: [16517] (in reverse order)
[2025-06-04 14:56:45] 2025-06-04 18:56:26,184 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:56:45] 2025-06-04 18:56:26,184 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:56:45] 2025-06-04 18:56:26,185 | INFO     | did not find any defunct processes belonging to 16517
[2025-06-04 14:56:45] 2025-06-04 18:56:26,186 | INFO     | did not find any defunct processes belonging to 16517
[2025-06-04 14:56:45] 2025-06-04 18:56:26,186 | INFO     | ready for new job
[2025-06-04 14:56:45] 2025-06-04 18:56:26,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:56:45] 2025-06-04 18:56:26,187 | INFO     | **************************************
[2025-06-04 14:56:45] 2025-06-04 18:56:26,187 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:56:45] 2025-06-04 18:56:26,187 | INFO     | **************************************
[2025-06-04 14:56:45] 2025-06-04 18:56:26,187 | INFO     | 
[2025-06-04 14:56:45] 2025-06-04 18:56:26,187 | INFO     | architecture information:
[2025-06-04 14:56:45] 2025-06-04 18:56:26,187 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:56:45] 2025-06-04 18:56:26,213 | INFO     | cat /etc/os-release:
[2025-06-04 14:56:45] NAME="CentOS Linux"
[2025-06-04 14:56:45] VERSION="7 (Core)"
[2025-06-04 14:56:45] ID="centos"
[2025-06-04 14:56:45] ID_LIKE="rhel fedora"
[2025-06-04 14:56:45] VERSION_ID="7"
[2025-06-04 14:56:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:56:45] ANSI_COLOR="0;31"
[2025-06-04 14:56:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:56:45] HOME_URL="https://www.centos.org/"
[2025-06-04 14:56:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:56:45] 
[2025-06-04 14:56:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:56:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:56:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:56:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:56:45] 
[2025-06-04 14:56:45] 2025-06-04 18:56:26,214 | INFO     | **************************************
[2025-06-04 14:56:45] 2025-06-04 18:56:26,717 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 14:56:45] 2025-06-04 18:56:26,730 | INFO     | sufficient remaining disk space (29391585280 B)
[2025-06-04 14:56:45] 2025-06-04 18:56:26,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:56:45] 2025-06-04 18:56:26,731 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:56:45] 2025-06-04 18:56:26,731 | INFO     | update_server=False
[2025-06-04 14:56:45] 2025-06-04 18:56:26,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:56:45] 2025-06-04 18:56:26,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:56:45] 2025-06-04 18:56:26,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:56:45] 2025-06-04 18:56:26,821 | INFO     | aborting loop
[2025-06-04 14:56:45] 2025-06-04 18:56:27,136 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:56:45] 2025-06-04 18:56:27,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:56:45] 2025-06-04 18:56:27,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:56:45] 2025-06-04 18:56:27,188 | INFO     | all job control threads have been joined
[2025-06-04 14:56:45] 2025-06-04 18:56:27,367 | INFO     | all payload control threads have been joined
[2025-06-04 14:56:45] 2025-06-04 18:56:27,644 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:56:45] 2025-06-04 18:56:27,659 | INFO     | all data control threads have been joined
[2025-06-04 14:56:45] 2025-06-04 18:56:27,733 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:27,737 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:27,826 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:28,193 | INFO     | [job] control thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:28,245 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:28,358 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:28,370 | INFO     | [payload] control thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:28,664 | INFO     | [data] control thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:28,893 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:28,970 | INFO     | [job] validate thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:29,198 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:29,207 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:29,212 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:29,646 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:30,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:56:45] 2025-06-04 18:56:34,151 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:37,642 | INFO     | job.realtimelogging is not enabled
[2025-06-04 14:56:45] 2025-06-04 18:56:38,646 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:56:45] 2025-06-04 18:56:40,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971031500608)>', '<ExcThread(monitor, started 139970736011008)>']
[2025-06-04 14:56:45] 2025-06-04 18:56:40,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:56:45] 2025-06-04 18:56:40,192 | INFO     | [monitor] control thread has ended
[2025-06-04 14:56:45] 2025-06-04 18:56:45,030 | INFO     | all workflow threads have been joined
[2025-06-04 14:56:45] 2025-06-04 18:56:45,046 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:56:45] 2025-06-04 18:56:45,046 | INFO     | traces error code: 0
[2025-06-04 14:56:45] 2025-06-04 18:56:45,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:56:45] 2025-06-04 18:56:45,105 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:56:45] 2025-06-04 18:56:45,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:56:45] 2025-06-04 18:56:45,109 [wrapper] pilotpid: 10124
[2025-06-04 14:56:45] 2025-06-04 18:56:45,111 [wrapper] Pilot exit status: 0
[2025-06-04 14:56:45] 2025-06-04 18:56:45,117 [wrapper] pandaids: 6667729892
[2025-06-04 14:56:45] 2025-06-04 18:56:45,131 [wrapper] cleanup supervisor_pilot 19031 10125
[2025-06-04 14:56:45] 2025-06-04 18:56:45,134 [wrapper] Test setup, not cleaning
[2025-06-04 14:56:45] 2025-06-04 18:56:45,136 [wrapper] apfmon messages muted
[2025-06-04 14:56:45] 2025-06-04 18:56:45,138 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:56:45] 2025-06-04 18:56:45,140 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:56:45]  *** Error codes and diagnostics ***
[2025-06-04 14:56:45]     "exeErrorCode": 0,
[2025-06-04 14:56:45]     "exeErrorDiag": "",
[2025-06-04 14:56:45]     "pilotErrorCode": 0,
[2025-06-04 14:56:45]     "pilotErrorDiag": "",
[2025-06-04 14:56:45]  *** Listing of results directory ***
[2025-06-04 14:56:45] total 411152
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas    495897 May 27 18:42 pilot3.tar.gz
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas      5111 May 27 19:01 queuedata.json
[2025-06-04 14:56:45] -rwx------ 1 boincer umatlas     37140 May 27 19:02 runpilot2-wrapper.sh
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas       100 Jun  4 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:56:45] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 12:58 run_atlas
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas       105 Jun  4 12:58 job.xml
[2025-06-04 14:56:45] -rw-r--r-- 2 boincer umatlas 222948190 Jun  4 12:59 EVNT.44871834._001504.pool.root.1
[2025-06-04 14:56:45] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 12:59 start_atlas.sh
[2025-06-04 14:56:45] drwxrwx--x 2 boincer umatlas      4096 Jun  4 12:59 shared
[2025-06-04 14:56:45] -rw-r--r-- 2 boincer umatlas    508886 Jun  4 12:59 input.tar.gz
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas         0 Jun  4 12:59 boinc_lockfile
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 12:59 pandaJob.out
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas    990984 Jun  4 12:59 agis_schedconf.cvmfs.json
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas   1598969 Jun  4 12:59 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:56:45] drwx------ 4 boincer umatlas      4096 Jun  4 12:59 pilot3
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas      6153 Jun  4 14:49 init_data.xml
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas 192413047 Jun  4 14:55 HITS.44871837._074704.pool.root.1
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas        95 Jun  4 14:55 pilot_heartbeat.json
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas       529 Jun  4 14:55 boinc_task_state.xml
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas      1052 Jun  4 14:56 memory_monitor_summary.json
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas    261448 Jun  4 14:56 log.44871837._074704.job.log.tgz.1
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas      7722 Jun  4 14:56 heartbeat.json
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 14:56 boinc_mmap_file
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas        27 Jun  4 14:56 wrapper_checkpoint.txt
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas      4425 Jun  4 14:56 pilotlog.txt
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas    653927 Jun  4 14:56 log.44871837._074704.job.log.1
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas       357 Jun  4 14:56 output.list
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas       620 Jun  4 14:56 runtime_log
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas    931840 Jun  4 14:56 result.tar.gz
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas       656 Jun  4 14:56 zW0NDmPUIe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiaaKDmGoRQSo.diag
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 14:56 runtime_log.err
[2025-06-04 14:56:45] -rw-r--r-- 1 boincer umatlas     21005 Jun  4 14:56 stderr.txt
[2025-06-04 14:56:45] HITS file was successfully produced:
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas 192413047 Jun  4 14:55 shared/HITS.pool.root.1
[2025-06-04 14:56:45]  *** Contents of shared directory: ***
[2025-06-04 14:56:45] total 407060
[2025-06-04 14:56:45] -rw-r--r-- 2 boincer umatlas 222948190 Jun  4 12:59 ATLAS.root_0
[2025-06-04 14:56:45] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 12:59 start_atlas.sh
[2025-06-04 14:56:45] -rw-r--r-- 2 boincer umatlas    508886 Jun  4 12:59 input.tar.gz
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas 192413047 Jun  4 14:55 HITS.pool.root.1
[2025-06-04 14:56:45] -rw------- 1 boincer umatlas    931840 Jun  4 14:56 result.tar.gz
14:56:46 (6157): run_atlas exited; CPU time 27211.521128
14:56:46 (6157): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN