Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:22:22 (2203225): wrapper (7.7.26015): starting
18:22:22 (2203225): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 18:22:22] Arguments: --nthreads 12
[2025-06-04 18:22:22] Threads: 12
[2025-06-04 18:22:22] Checking for CVMFS
[2025-06-04 18:22:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:22:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:22:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:22:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:22:23] 2.12.7.0 33619 2206 52124 146791 2 56 4009071 4096000 2733 130560 1 5929103 99.997 550852 166 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 18:22:23] CVMFS is ok
[2025-06-04 18:22:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:22:23] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 18:22:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 18:22:23] Further information can be found at the LHC@home message board.
[2025-06-04 18:22:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:22:23] Checking for apptainer binary...
[2025-06-04 18:22:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:22:23] Running /usr/bin/apptainer --version
[2025-06-04 18:22:23] apptainer version 1.3.4
[2025-06-04 18:22:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:22:23] dualxeon1
[2025-06-04 18:22:23] apptainer works
[2025-06-04 18:22:23] Set ATHENA_PROC_NUMBER=12
[2025-06-04 18:22:23] Set ATHENA_CORE_NUMBER=12
[2025-06-04 18:22:24] Starting ATLAS job with PandaID=6667201773
[2025-06-04 18:22:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 19:34:43]  *** The last 200 lines of the pilot log: ***
[2025-06-04 19:34:43] 2025-06-04 19:33:51,119 | INFO     | this job has now completed (state=finished)
[2025-06-04 19:34:43] 2025-06-04 19:33:51,119 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 19:34:43] 2025-06-04 19:33:51,119 | INFO     | log transfer has been attempted: DONE
[2025-06-04 19:34:43] 2025-06-04 19:33:51,120 | INFO     | job 6667201773 has finished - writing final server update
[2025-06-04 19:34:43] 2025-06-04 19:33:51,120 | INFO     | total number of processed events: 400 (read)
[2025-06-04 19:34:43] 2025-06-04 19:33:51,123 | INFO     | executing command: lscpu
[2025-06-04 19:34:43] 2025-06-04 19:33:51,159 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 19:34:43] 2025-06-04 19:33:52,509 | INFO     | monitor loop #320: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:33:52,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:33:55,013 | INFO     | monitor loop #321: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:33:55,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:33:57,515 | INFO     | monitor loop #322: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:33:57,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:00,018 | INFO     | monitor loop #323: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:00,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:02,522 | INFO     | monitor loop #324: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:02,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:05,025 | INFO     | monitor loop #325: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:05,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:07,528 | INFO     | monitor loop #326: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:07,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:08,928 | INFO     | PID=2206977 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 19:34:43] 2025-06-04 19:34:10,032 | INFO     | monitor loop #327: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:10,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:12,535 | INFO     | monitor loop #328: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:12,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:15,037 | INFO     | monitor loop #329: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:15,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:17,540 | INFO     | monitor loop #330: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:17,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:20,044 | INFO     | monitor loop #331: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:20,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:22,547 | INFO     | monitor loop #332: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:22,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:25,050 | INFO     | monitor loop #333: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:25,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:27,554 | INFO     | monitor loop #334: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:27,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:30,056 | INFO     | monitor loop #335: job 0:6667201773 is in state 'finished'
[2025-06-04 19:34:43] 2025-06-04 19:34:30,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:34:43] 2025-06-04 19:34:30,977 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 19:34:43] 2025-06-04 19:34:30,978 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/3/PanDA_Pilot-6667201773/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 19:34:43] 2025-06-04 19:34:30,979 | INFO     | extracted standard info from prmon json
[2025-06-04 19:34:43] 2025-06-04 19:34:30,979 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 19:34:43] 2025-06-04 19:34:30,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 19:34:43] 2025-06-04 19:34:30,980 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 19:34:43] 2025-06-04 19:34:30,980 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 19:34:43] 2025-06-04 19:34:30,982 | INFO     | fitting pss+swap vs Time
[2025-06-04 19:34:43] 2025-06-04 19:34:30,982 | INFO     | sum of square deviations: 77515872.0
[2025-06-04 19:34:43] 2025-06-04 19:34:30,983 | INFO     | sum of deviations: -6921383422.0
[2025-06-04 19:34:43] 2025-06-04 19:34:30,983 | INFO     | mean x: 1749063581.0
[2025-06-04 19:34:43] 2025-06-04 19:34:30,983 | INFO     | mean y: 2983890.0476190476
[2025-06-04 19:34:43] 2025-06-04 19:34:30,983 | INFO     | -- intersect: 156176672725.76572
[2025-06-04 19:34:43] 2025-06-04 19:34:30,983 | INFO     | intersect: 156176672725.76572
[2025-06-04 19:34:43] 2025-06-04 19:34:30,983 | INFO     | chi2: 0.16179220636432373
[2025-06-04 19:34:43] 2025-06-04 19:34:30,984 | INFO     | -- intersect: 156176672725.76572
[2025-06-04 19:34:43] 2025-06-04 19:34:30,984 | INFO     | current memory leak: -89.29 B/s (using 63 data points, chi2=0.16)
[2025-06-04 19:34:43] 2025-06-04 19:34:30,984 | INFO     | ..............................
[2025-06-04 19:34:43] 2025-06-04 19:34:30,984 | INFO     | . Timing measurements:
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | . get job = 0 s
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | . initial setup = 2 s
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | . payload setup = 7 s
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | . stage-in = 0 s
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | . payload execution = 4244 s
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | . stage-out = 0 s
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | . log creation = 0 s
[2025-06-04 19:34:43] 2025-06-04 19:34:30,985 | INFO     | ..............................
[2025-06-04 19:34:43] 2025-06-04 19:34:31,093 | INFO     | 
[2025-06-04 19:34:43] 2025-06-04 19:34:31,093 | INFO     | job summary report
[2025-06-04 19:34:43] 2025-06-04 19:34:31,093 | INFO     | --------------------------------------------------
[2025-06-04 19:34:43] 2025-06-04 19:34:31,093 | INFO     | PanDA job id: 6667201773
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | task id: 44871837
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | errors: (none)
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | pilot state: finished 
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | transexitcode: 0
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | exeerrorcode: 0
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | exeerrordiag: 
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | exitcode: 0
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | exitmsg: OK
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | cpuconsumptiontime: 46306 s
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | nevents: 400
[2025-06-04 19:34:43] 2025-06-04 19:34:31,094 | INFO     | neventsw: 0
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | pid: 2213677
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | pgrp: 2213677
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | corecount: 12
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | event service: False
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | sizes: {0: 2397187, 1: 2397442, 5: 2397648, 12: 2397704, 4256: 2423518, 4258: 2432505, 4259: 2432689, 4300: 2432859}
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | --------------------------------------------------
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | 
[2025-06-04 19:34:43] 2025-06-04 19:34:31,095 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-06-04 19:34:43] 2025-06-04 19:34:31,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,115 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 19:34:43] 2025-06-04 19:34:31,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 19:34:43] 2025-06-04 19:34:31,118 | INFO     | job 6667201773 has completed (purged errors)
[2025-06-04 19:34:43] 2025-06-04 19:34:31,118 | INFO     | overall cleanup function is called
[2025-06-04 19:34:43] 2025-06-04 19:34:31,282 | INFO     | PID=2206977 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 19:34:43] 2025-06-04 19:34:32,129 | INFO     | --- collectZombieJob: --- 10, [2213677]
[2025-06-04 19:34:43] 2025-06-04 19:34:32,129 | INFO     | zombie collector waiting for pid 2213677
[2025-06-04 19:34:43] 2025-06-04 19:34:32,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 19:34:43] 2025-06-04 19:34:32,130 | INFO     | collected zombie processes
[2025-06-04 19:34:43] 2025-06-04 19:34:32,130 | INFO     | will attempt to kill all subprocesses of pid=2213677
[2025-06-04 19:34:43] 2025-06-04 19:34:32,269 | INFO     | process IDs to be killed: [2213677] (in reverse order)
[2025-06-04 19:34:43] 2025-06-04 19:34:32,310 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 19:34:43] 2025-06-04 19:34:32,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 19:34:43] 2025-06-04 19:34:32,313 | INFO     | did not find any defunct processes belonging to 2213677
[2025-06-04 19:34:43] 2025-06-04 19:34:32,315 | INFO     | did not find any defunct processes belonging to 2213677
[2025-06-04 19:34:43] 2025-06-04 19:34:32,316 | INFO     | ready for new job
[2025-06-04 19:34:43] 2025-06-04 19:34:32,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 19:34:43] 2025-06-04 19:34:32,317 | INFO     | **************************************
[2025-06-04 19:34:43] 2025-06-04 19:34:32,318 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 19:34:43] 2025-06-04 19:34:32,318 | INFO     | **************************************
[2025-06-04 19:34:43] 2025-06-04 19:34:32,318 | INFO     | 
[2025-06-04 19:34:43] 2025-06-04 19:34:32,319 | INFO     | architecture information:
[2025-06-04 19:34:43] 2025-06-04 19:34:32,319 | INFO     | executing command: cat /etc/os-release
[2025-06-04 19:34:43] 2025-06-04 19:34:32,331 | INFO     | cat /etc/os-release:
[2025-06-04 19:34:43] NAME="CentOS Linux"
[2025-06-04 19:34:43] VERSION="7 (Core)"
[2025-06-04 19:34:43] ID="centos"
[2025-06-04 19:34:43] ID_LIKE="rhel fedora"
[2025-06-04 19:34:43] VERSION_ID="7"
[2025-06-04 19:34:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 19:34:43] ANSI_COLOR="0;31"
[2025-06-04 19:34:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 19:34:43] HOME_URL="https://www.centos.org/"
[2025-06-04 19:34:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 19:34:43] 
[2025-06-04 19:34:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 19:34:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 19:34:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 19:34:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 19:34:43] 
[2025-06-04 19:34:43] 2025-06-04 19:34:32,331 | INFO     | **************************************
[2025-06-04 19:34:43] 2025-06-04 19:34:32,834 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-06-04 19:34:43] 2025-06-04 19:34:32,846 | INFO     | sufficient remaining disk space (13531873280 B)
[2025-06-04 19:34:43] 2025-06-04 19:34:32,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 19:34:43] 2025-06-04 19:34:32,847 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 19:34:43] 2025-06-04 19:34:32,847 | INFO     | update_server=False
[2025-06-04 19:34:43] 2025-06-04 19:34:32,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 19:34:43] 2025-06-04 19:34:32,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:34:43] 2025-06-04 19:34:32,848 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 19:34:43] 2025-06-04 19:34:33,288 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 19:34:43] 2025-06-04 19:34:33,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 19:34:43] 2025-06-04 19:34:33,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 19:34:43] 2025-06-04 19:34:33,471 | INFO     | all data control threads have been joined
[2025-06-04 19:34:43] 2025-06-04 19:34:33,568 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:34:43] 2025-06-04 19:34:33,568 | INFO     | aborting loop
[2025-06-04 19:34:43] 2025-06-04 19:34:33,853 | INFO     | [job] queue monitor thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:33,853 | INFO     | [job] retrieve thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,077 | INFO     | [payload] failed_post thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 19:34:43] 2025-06-04 19:34:34,106 | INFO     | all job control threads have been joined
[2025-06-04 19:34:43] 2025-06-04 19:34:34,161 | INFO     | all payload control threads have been joined
[2025-06-04 19:34:43] 2025-06-04 19:34:34,203 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,477 | INFO     | [data] control thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,482 | INFO     | [job] validate thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,574 | INFO     | [job] job monitor thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,669 | INFO     | [payload] validate_post thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,757 | INFO     | [data] copytool_in thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,769 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:34,972 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:35,112 | INFO     | [job] control thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:35,166 | INFO     | [payload] control thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:35,317 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:36,107 | INFO     | [data] copytool_out thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:36,854 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 19:34:43] 2025-06-04 19:34:38,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124159531423552)>', '<ExcThread(monitor, started 124159023630080)>']
[2025-06-04 19:34:43] 2025-06-04 19:34:39,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 19:34:43] 2025-06-04 19:34:39,319 | INFO     | [monitor] control thread has ended
[2025-06-04 19:34:43] 2025-06-04 19:34:43,408 | INFO     | all workflow threads have been joined
[2025-06-04 19:34:43] 2025-06-04 19:34:43,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 19:34:43] 2025-06-04 19:34:43,409 | INFO     | traces error code: 0
[2025-06-04 19:34:43] 2025-06-04 19:34:43,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 19:34:43] 2025-06-04 19:34:43,506 [wrapper] ==== pilot stdout END ====
[2025-06-04 19:34:43] 2025-06-04 19:34:43,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 19:34:43] 2025-06-04 19:34:43,513 [wrapper] pilotpid: 2206977
[2025-06-04 19:34:43] 2025-06-04 19:34:43,517 [wrapper] Pilot exit status: 0
[2025-06-04 19:34:43] 2025-06-04 19:34:43,530 [wrapper] pandaids: 6667201773
[2025-06-04 19:34:43] 2025-06-04 19:34:43,562 [wrapper] cleanup supervisor_pilot 2236604 2206978
[2025-06-04 19:34:43] 2025-06-04 19:34:43,565 [wrapper] Test setup, not cleaning
[2025-06-04 19:34:43] 2025-06-04 19:34:43,569 [wrapper] apfmon messages muted
[2025-06-04 19:34:43] 2025-06-04 19:34:43,572 [wrapper] ==== wrapper stdout END ====
[2025-06-04 19:34:43] 2025-06-04 19:34:43,575 [wrapper] ==== wrapper stderr END ====
[2025-06-04 19:34:43]  *** Error codes and diagnostics ***
[2025-06-04 19:34:43]     "exeErrorCode": 0,
[2025-06-04 19:34:43]     "exeErrorDiag": "",
[2025-06-04 19:34:43]     "pilotErrorCode": 0,
[2025-06-04 19:34:43]     "pilotErrorDiag": "",
[2025-06-04 19:34:43]  *** Listing of results directory ***
[2025-06-04 19:34:43] total 414668
[2025-06-04 19:34:43] -rw-r--r-- 1 boinc boinc      5111 Mai 27 15:35 queuedata.json
[2025-06-04 19:34:43] -rwx------ 1 boinc boinc     37140 Mai 27 15:39 runpilot2-wrapper.sh
[2025-06-04 19:34:43] -rw-r--r-- 1 boinc boinc    495897 Mai 27 15:39 pilot3.tar.gz
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc       100 Jun  4 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 19:34:43] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 18:22 run_atlas
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc       105 Jun  4 18:22 job.xml
[2025-06-04 19:34:43] -rw-r--r-- 2 boinc boinc 223324820 Jun  4 18:22 EVNT.44871834._002736.pool.root.1
[2025-06-04 19:34:43] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:22 start_atlas.sh
[2025-06-04 19:34:43] drwxrwx--x 2 boinc boinc      4096 Jun  4 18:22 shared
[2025-06-04 19:34:43] -rw-r--r-- 2 boinc boinc    508877 Jun  4 18:22 input.tar.gz
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc      9391 Jun  4 18:22 init_data.xml
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc         0 Jun  4 18:22 boinc_lockfile
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc      2558 Jun  4 18:22 pandaJob.out
[2025-06-04 19:34:43] -rw------- 1 boinc boinc    990984 Jun  4 18:22 agis_schedconf.cvmfs.json
[2025-06-04 19:34:43] -rw------- 1 boinc boinc   1598969 Jun  4 18:22 agis_ddmendpoints.agis.ALL.json
[2025-06-04 19:34:43] drwx------ 4 boinc boinc      4096 Jun  4 18:22 pilot3
[2025-06-04 19:34:43] -rw------- 1 boinc boinc 195873243 Jun  4 19:33 HITS.44871837._069580.pool.root.1
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc       529 Jun  4 19:33 boinc_task_state.xml
[2025-06-04 19:34:43] -rw------- 1 boinc boinc      1023 Jun  4 19:33 memory_monitor_summary.json
[2025-06-04 19:34:43] -rw------- 1 boinc boinc    351668 Jun  4 19:33 log.44871837._069580.job.log.tgz.1
[2025-06-04 19:34:43] -rw------- 1 boinc boinc        95 Jun  4 19:34 pilot_heartbeat.json
[2025-06-04 19:34:43] -rw------- 1 boinc boinc      7678 Jun  4 19:34 heartbeat.json
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc        27 Jun  4 19:34 wrapper_checkpoint.txt
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 19:34 boinc_mmap_file
[2025-06-04 19:34:43] -rw------- 1 boinc boinc      4376 Jun  4 19:34 pilotlog.txt
[2025-06-04 19:34:43] -rw------- 1 boinc boinc    440862 Jun  4 19:34 log.44871837._069580.job.log.1
[2025-06-04 19:34:43] -rw------- 1 boinc boinc       357 Jun  4 19:34 output.list
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc       620 Jun  4 19:34 runtime_log
[2025-06-04 19:34:43] -rw------- 1 boinc boinc    808960 Jun  4 19:34 result.tar.gz
[2025-06-04 19:34:43] -rw------- 1 boinc boinc       653 Jun  4 19:34 OoQLDmOaBe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmX1RKDmC3Evvn.diag
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc      8968 Jun  4 19:34 runtime_log.err
[2025-06-04 19:34:43] -rw-rw-r-- 1 boinc boinc     22610 Jun  4 19:34 stderr.txt
[2025-06-04 19:34:43] HITS file was successfully produced:
[2025-06-04 19:34:43] -rw------- 1 boinc boinc 195873243 Jun  4 19:33 shared/HITS.pool.root.1
[2025-06-04 19:34:43]  *** Contents of shared directory: ***
[2025-06-04 19:34:43] total 410692
[2025-06-04 19:34:43] -rw-r--r-- 2 boinc boinc 223324820 Jun  4 18:22 ATLAS.root_0
[2025-06-04 19:34:43] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:22 start_atlas.sh
[2025-06-04 19:34:43] -rw-r--r-- 2 boinc boinc    508877 Jun  4 18:22 input.tar.gz
[2025-06-04 19:34:43] -rw------- 1 boinc boinc 195873243 Jun  4 19:33 HITS.pool.root.1
[2025-06-04 19:34:43] -rw------- 1 boinc boinc    808960 Jun  4 19:34 result.tar.gz
19:34:45 (2203225): run_atlas exited; CPU time 46352.797678
19:34:45 (2203225): called boinc_finish(0)

</stderr_txt>
]]>

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