Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:31:37 (52360): wrapper (7.7.26015): starting
12:31:37 (52360): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 12:31:37] Arguments: --nthreads 8
[2025-06-04 12:31:37] Threads: 8
[2025-06-04 12:31:37] Checking for CVMFS
[2025-06-04 12:31:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:31:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:31:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:31:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:31:38] 2.11.2.0 74184 12937 353484 146788 1 314 10018240 18432001 8201 130560 0 77288910 99.628 56970281 42821 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 12:31:38] CVMFS is ok
[2025-06-04 12:31:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:31:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 12:31:38] Further information can be found at the LHC@home message board.
[2025-06-04 12:31:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:31:38] Checking for apptainer binary...
[2025-06-04 12:31:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 12:31:38] Running /usr/bin/apptainer --version
[2025-06-04 12:31:38] apptainer version 1.3.2-1.el7
[2025-06-04 12:31:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:31:38] c-212-13.aglt2.org
[2025-06-04 12:31:38] apptainer works
[2025-06-04 12:31:38] Set ATHENA_PROC_NUMBER=8
[2025-06-04 12:31:38] Set ATHENA_CORE_NUMBER=8
[2025-06-04 12:31:38] Starting ATLAS job with PandaID=6666906620
[2025-06-04 12:31:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:51:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:51:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 13:51:02]  is_altstaged=None
[2025-06-04 13:51:02]  is_tar=False
[2025-06-04 13:51:02]  lfn=log.44871837._065893.job.log.tgz.1
[2025-06-04 13:51:02]  mtime=0
[2025-06-04 13:51:02]  protocol_id=None
[2025-06-04 13:51:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 13:51:02]  replicas=None
[2025-06-04 13:51:02]  scope=mc23_13p6TeV
[2025-06-04 13:51:02]  status=None
[2025-06-04 13:51:02]  status_code=0
[2025-06-04 13:51:02]  storage_token=
[2025-06-04 13:51:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6666906620/log.44871837._065893.job.log.tgz.1
[2025-06-04 13:51:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/f0/log.44871837._065893.job.log.tgz.1
[2025-06-04 13:51:02]  workdir=None
[2025-06-04 13:51:02] ]
[2025-06-04 13:51:02] 2025-06-04 17:50:37,925 | INFO     | transferring file log.44871837._065893.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6666906620/log.44871837._065893.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 13:51:02] 2025-06-04 17:50:37,925 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6666906620/log.44871837._065893.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._065893.job
[2025-06-04 13:51:02] 2025-06-04 17:50:37,940 | INFO     | adding to output.list: log.44871837._065893.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/f0/log.44871837._065893.job.log.tg
[2025-06-04 13:51:02] 2025-06-04 17:50:37,941 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 13:51:02] 2025-06-04 17:50:37,941 | INFO     | summary of transferred files:
[2025-06-04 13:51:02] 2025-06-04 17:50:37,941 | INFO     |  -- lfn=log.44871837._065893.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 13:51:02] 2025-06-04 17:50:37,941 | INFO     | stage-out finished correctly
[2025-06-04 13:51:02] 2025-06-04 17:50:38,138 | INFO     | PID=55944 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 13:51:02] 2025-06-04 17:50:38,139 | INFO     | .. there are 14 such processes running
[2025-06-04 13:51:02] 2025-06-04 17:50:38,454 | INFO     | monitor loop #361: job 0:6666906620 is in state 'finished'
[2025-06-04 13:51:02] 2025-06-04 17:50:38,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:51:02] 2025-06-04 17:50:38,876 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 13:51:02] 2025-06-04 17:50:40,696 | INFO     | job 6666906620 has state=finished
[2025-06-04 13:51:02] 2025-06-04 17:50:40,697 | INFO     | preparing for final server update for job 6666906620 in state='finished'
[2025-06-04 13:51:02] 2025-06-04 17:50:40,697 | INFO     | this job has now completed (state=finished)
[2025-06-04 13:51:02] 2025-06-04 17:50:40,697 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 13:51:02] 2025-06-04 17:50:40,697 | INFO     | log transfer has been attempted: DONE
[2025-06-04 13:51:02] 2025-06-04 17:50:40,697 | INFO     | job 6666906620 has finished - writing final server update
[2025-06-04 13:51:02] 2025-06-04 17:50:40,697 | INFO     | total number of processed events: 400 (read)
[2025-06-04 13:51:02] 2025-06-04 17:50:40,700 | INFO     | executing command: lscpu
[2025-06-04 13:51:02] 2025-06-04 17:50:40,724 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 13:51:02] 2025-06-04 17:50:40,957 | INFO     | monitor loop #362: job 0:6666906620 is in state 'finished'
[2025-06-04 13:51:02] 2025-06-04 17:50:40,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:51:02] 2025-06-04 17:50:43,174 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 13:51:02] 2025-06-04 17:50:43,175 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6666906620/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:51:02] 2025-06-04 17:50:43,175 | INFO     | extracted standard info from prmon json
[2025-06-04 13:51:02] 2025-06-04 17:50:43,175 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:51:02] 2025-06-04 17:50:43,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:51:02] 2025-06-04 17:50:43,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:51:02] 2025-06-04 17:50:43,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | sum of square deviations: 110960220.0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | sum of deviations: -4793467596.0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | mean x: 1749057164.0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | mean y: 2584113.5774647887
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | -- intersect: 75561634367.67447
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | intersect: 75561634367.67447
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | chi2: 0.01865933914915764
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | -- intersect: 75561634367.67447
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | current memory leak: -43.20 B/s (using 71 data points, chi2=0.02)
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | ..............................
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | . Timing measurements:
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | . get job = 0 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,177 | INFO     | . initial setup = 2 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,178 | INFO     | . payload setup = 3 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,178 | INFO     | . stage-in = 0 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,178 | INFO     | . payload execution = 4711 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,178 | INFO     | . stage-out = 0 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,178 | INFO     | . log creation = 0 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,178 | INFO     | ..............................
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | 
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | job summary report
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | --------------------------------------------------
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | PanDA job id: 6666906620
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | task id: 44871837
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | errors: (none)
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | pilot state: finished 
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | transexitcode: 0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | exeerrorcode: 0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | exeerrordiag: 
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | exitcode: 0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | exitmsg: OK
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | cpuconsumptiontime: 35302 s
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | nevents: 400
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | neventsw: 0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | pid: 67975
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | pgrp: 67975
[2025-06-04 13:51:02] 2025-06-04 17:50:43,214 | INFO     | corecount: 8
[2025-06-04 13:51:02] 2025-06-04 17:50:43,215 | INFO     | event service: False
[2025-06-04 13:51:02] 2025-06-04 17:50:43,215 | INFO     | sizes: {0: 2397392, 2: 2397598, 10: 2397626, 4719: 2423811, 4721: 2432752, 4722: 2432808, 4726: 2433106}
[2025-06-04 13:51:02] 2025-06-04 17:50:43,215 | INFO     | --------------------------------------------------
[2025-06-04 13:51:02] 2025-06-04 17:50:43,215 | INFO     | 
[2025-06-04 13:51:02] 2025-06-04 17:50:43,215 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,225 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | job 6666906620 has completed (purged errors)
[2025-06-04 13:51:02] 2025-06-04 17:50:43,226 | INFO     | overall cleanup function is called
[2025-06-04 13:51:02] 2025-06-04 17:50:44,232 | INFO     | --- collectZombieJob: --- 10, [67975]
[2025-06-04 13:51:02] 2025-06-04 17:50:44,232 | INFO     | zombie collector waiting for pid 67975
[2025-06-04 13:51:02] 2025-06-04 17:50:44,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:51:02] 2025-06-04 17:50:44,232 | INFO     | collected zombie processes
[2025-06-04 13:51:02] 2025-06-04 17:50:44,232 | INFO     | will attempt to kill all subprocesses of pid=67975
[2025-06-04 13:51:02] 2025-06-04 17:50:44,351 | INFO     | process IDs to be killed: [67975] (in reverse order)
[2025-06-04 13:51:02] 2025-06-04 17:50:44,403 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:51:02] 2025-06-04 17:50:44,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:51:02] 2025-06-04 17:50:44,411 | INFO     | did not find any defunct processes belonging to 67975
[2025-06-04 13:51:02] 2025-06-04 17:50:44,415 | INFO     | did not find any defunct processes belonging to 67975
[2025-06-04 13:51:02] 2025-06-04 17:50:44,415 | INFO     | ready for new job
[2025-06-04 13:51:02] 2025-06-04 17:50:44,416 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:51:02] 2025-06-04 17:50:44,416 | INFO     | **************************************
[2025-06-04 13:51:02] 2025-06-04 17:50:44,416 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:51:02] 2025-06-04 17:50:44,416 | INFO     | **************************************
[2025-06-04 13:51:02] 2025-06-04 17:50:44,416 | INFO     | 
[2025-06-04 13:51:02] 2025-06-04 17:50:44,419 | INFO     | architecture information:
[2025-06-04 13:51:02] 2025-06-04 17:50:44,419 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:51:02] 2025-06-04 17:50:44,430 | INFO     | cat /etc/os-release:
[2025-06-04 13:51:02] NAME="CentOS Linux"
[2025-06-04 13:51:02] VERSION="7 (Core)"
[2025-06-04 13:51:02] ID="centos"
[2025-06-04 13:51:02] ID_LIKE="rhel fedora"
[2025-06-04 13:51:02] VERSION_ID="7"
[2025-06-04 13:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:51:02] ANSI_COLOR="0;31"
[2025-06-04 13:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:51:02] HOME_URL="https://www.centos.org/"
[2025-06-04 13:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:51:02] 
[2025-06-04 13:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:51:02] 
[2025-06-04 13:51:02] 2025-06-04 17:50:44,430 | INFO     | **************************************
[2025-06-04 13:51:02] 2025-06-04 17:50:44,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 13:51:02] 2025-06-04 17:50:44,944 | INFO     | sufficient remaining disk space (106018373632 B)
[2025-06-04 13:51:02] 2025-06-04 17:50:44,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:51:02] 2025-06-04 17:50:44,944 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | INFO     | update_server=False
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | INFO     | aborting loop
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:51:02] 2025-06-04 17:50:44,945 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:51:02] 2025-06-04 17:50:45,412 | INFO     | all payload control threads have been joined
[2025-06-04 13:51:02] 2025-06-04 17:50:45,508 | INFO     | all data control threads have been joined
[2025-06-04 13:51:02] 2025-06-04 17:50:45,808 | INFO     | all job control threads have been joined
[2025-06-04 13:51:02] 2025-06-04 17:50:45,950 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:45,950 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:45,950 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:45,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:51:02] 2025-06-04 17:50:46,013 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:46,041 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:46,044 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:46,417 | INFO     | [payload] control thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:46,513 | INFO     | [data] control thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:46,813 | INFO     | [job] control thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:46,882 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:46,917 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:47,049 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:47,389 | INFO     | [job] validate thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:48,002 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:48,951 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:55,297 | INFO     | job.realtimelogging is not enabled
[2025-06-04 13:51:02] 2025-06-04 17:50:56,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:51:02] 2025-06-04 17:50:57,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011732076352)>', '<ExcThread(monitor, started 140011026507520)>']
[2025-06-04 13:51:02] 2025-06-04 17:50:58,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:51:02] 2025-06-04 17:50:58,000 | INFO     | [monitor] control thread has ended
[2025-06-04 13:51:02] 2025-06-04 17:51:02,360 | INFO     | all workflow threads have been joined
[2025-06-04 13:51:02] 2025-06-04 17:51:02,360 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:51:02] 2025-06-04 17:51:02,360 | INFO     | traces error code: 0
[2025-06-04 13:51:02] 2025-06-04 17:51:02,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:51:02] 2025-06-04 17:51:02,421 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:51:02] 2025-06-04 17:51:02,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:51:02] 2025-06-04 17:51:02,423 [wrapper] pilotpid: 55944
[2025-06-04 13:51:02] 2025-06-04 17:51:02,424 [wrapper] Pilot exit status: 0
[2025-06-04 13:51:02] 2025-06-04 17:51:02,429 [wrapper] pandaids: 6666906620
[2025-06-04 13:51:02] 2025-06-04 17:51:02,463 [wrapper] cleanup supervisor_pilot 52431 55945
[2025-06-04 13:51:02] 2025-06-04 17:51:02,464 [wrapper] Test setup, not cleaning
[2025-06-04 13:51:02] 2025-06-04 17:51:02,466 [wrapper] apfmon messages muted
[2025-06-04 13:51:02] 2025-06-04 17:51:02,468 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:51:02] 2025-06-04 17:51:02,469 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:51:02]  *** Error codes and diagnostics ***
[2025-06-04 13:51:02]     "exeErrorCode": 0,
[2025-06-04 13:51:02]     "exeErrorDiag": "",
[2025-06-04 13:51:02]     "pilotErrorCode": 0,
[2025-06-04 13:51:02]     "pilotErrorDiag": "",
[2025-06-04 13:51:02]  *** Listing of results directory ***
[2025-06-04 13:51:02] total 420608
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas    495897 May 27 06:25 pilot3.tar.gz
[2025-06-04 13:51:02] -rwx------ 1 boincer umatlas     37140 May 27 06:28 runpilot2-wrapper.sh
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas      5111 May 27 06:28 queuedata.json
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas       100 Jun  4 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:51:02] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 12:31 run_atlas
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas       105 Jun  4 12:31 job.xml
[2025-06-04 13:51:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 12:31 start_atlas.sh
[2025-06-04 13:51:02] drwxrwx--x 2 boincer umatlas      4096 Jun  4 12:31 shared
[2025-06-04 13:51:02] -rw-r--r-- 2 boincer umatlas    508866 Jun  4 12:31 input.tar.gz
[2025-06-04 13:51:02] -rw-r--r-- 2 boincer umatlas 224392791 Jun  4 12:31 EVNT.44871834._002595.pool.root.1
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas         0 Jun  4 12:31 boinc_lockfile
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 12:31 pandaJob.out
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas    990984 Jun  4 12:31 agis_schedconf.cvmfs.json
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas   1598969 Jun  4 12:31 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:51:02] drwx------ 4 boincer umatlas      4096 Jun  4 12:31 pilot3
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas      6388 Jun  4 13:47 init_data.xml
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas 200913872 Jun  4 13:50 HITS.44871837._065893.pool.root.1
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas       529 Jun  4 13:50 boinc_task_state.xml
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas        95 Jun  4 13:50 pilot_heartbeat.json
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas      1045 Jun  4 13:50 memory_monitor_summary.json
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas    304487 Jun  4 13:50 log.44871837._065893.job.log.tgz.1
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas      7713 Jun  4 13:50 heartbeat.json
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas        27 Jun  4 13:50 wrapper_checkpoint.txt
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 13:50 boinc_mmap_file
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas      4549 Jun  4 13:51 pilotlog.txt
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas    471652 Jun  4 13:51 log.44871837._065893.job.log.1
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas       357 Jun  4 13:51 output.list
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas       620 Jun  4 13:51 runtime_log
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas    798720 Jun  4 13:51 result.tar.gz
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 13:51 runtime_log.err
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas       658 Jun  4 13:51 dS6LDmpi6d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmv8YKDmvrjoBn.diag
[2025-06-04 13:51:02] -rw-r--r-- 1 boincer umatlas     21395 Jun  4 13:51 stderr.txt
[2025-06-04 13:51:02] HITS file was successfully produced:
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas 200913872 Jun  4 13:50 shared/HITS.pool.root.1
[2025-06-04 13:51:02]  *** Contents of shared directory: ***
[2025-06-04 13:51:02] total 416648
[2025-06-04 13:51:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 12:31 start_atlas.sh
[2025-06-04 13:51:02] -rw-r--r-- 2 boincer umatlas    508866 Jun  4 12:31 input.tar.gz
[2025-06-04 13:51:02] -rw-r--r-- 2 boincer umatlas 224392791 Jun  4 12:31 ATLAS.root_0
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas 200913872 Jun  4 13:50 HITS.pool.root.1
[2025-06-04 13:51:02] -rw------- 1 boincer umatlas    798720 Jun  4 13:51 result.tar.gz
13:51:04 (52360): run_atlas exited; CPU time 35251.822663
13:51:04 (52360): called boinc_finish(0)

</stderr_txt>
]]>

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