Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:22:50 (2568328): wrapper (7.7.26015): starting
12:22:50 (2568328): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 12:22:50] Arguments: --nthreads 8
[2025-06-04 12:22:50] Threads: 8
[2025-06-04 12:22:50] Checking for CVMFS
[2025-06-04 12:22:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:22:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:22:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:22:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:22:51] 2.12.6.0 5755 1573 260316 146788 1 332 30234236 32935937 33032 16776704 0 23511472 99.683 15206064 22239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 12:22:51] CVMFS is ok
[2025-06-04 12:22:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:22:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 12:22:51] Further information can be found at the LHC@home message board.
[2025-06-04 12:22:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:22:51] Checking for apptainer binary...
[2025-06-04 12:22:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 12:22:51] Running /usr/bin/apptainer --version
[2025-06-04 12:22:51] apptainer version 1.4.1-1.el9
[2025-06-04 12:22:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:22:51] c7-3-34.aglt2.org
[2025-06-04 12:22:51] apptainer works
[2025-06-04 12:22:51] Set ATHENA_PROC_NUMBER=8
[2025-06-04 12:22:51] Set ATHENA_CORE_NUMBER=8
[2025-06-04 12:22:51] Starting ATLAS job with PandaID=6668234397
[2025-06-04 12:22:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:57:33]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:57:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/2d/log.44871837._081806.job.log.tgz.1
[2025-06-04 13:57:33]  workdir=None
[2025-06-04 13:57:33] ]
[2025-06-04 13:57:33] 2025-06-04 17:57:04,738 | INFO     | transferring file log.44871837._081806.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6668234397/log.44871837._081806.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 13:57:33] 2025-06-04 17:57:04,738 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6668234397/log.44871837._081806.job.log.tgz.1 /tmp/boinchome/slots/2/log.44871837._081806.job
[2025-06-04 13:57:33] 2025-06-04 17:57:04,753 | INFO     | adding to output.list: log.44871837._081806.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/2d/log.44871837._081806.job.log.tg
[2025-06-04 13:57:33] 2025-06-04 17:57:04,753 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 13:57:33] 2025-06-04 17:57:04,754 | INFO     | summary of transferred files:
[2025-06-04 13:57:33] 2025-06-04 17:57:04,754 | INFO     |  -- lfn=log.44871837._081806.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 13:57:33] 2025-06-04 17:57:04,754 | INFO     | stage-out finished correctly
[2025-06-04 13:57:33] 2025-06-04 17:57:05,368 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 13:57:33] 2025-06-04 17:57:08,082 | INFO     | job 6668234397 has state=finished
[2025-06-04 13:57:33] 2025-06-04 17:57:08,082 | INFO     | preparing for final server update for job 6668234397 in state='finished'
[2025-06-04 13:57:33] 2025-06-04 17:57:08,083 | INFO     | this job has now completed (state=finished)
[2025-06-04 13:57:33] 2025-06-04 17:57:08,083 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 13:57:33] 2025-06-04 17:57:08,083 | INFO     | log transfer has been attempted: DONE
[2025-06-04 13:57:33] 2025-06-04 17:57:08,083 | INFO     | job 6668234397 has finished - writing final server update
[2025-06-04 13:57:33] 2025-06-04 17:57:08,083 | INFO     | total number of processed events: 400 (read)
[2025-06-04 13:57:33] 2025-06-04 17:57:08,102 | INFO     | executing command: lscpu
[2025-06-04 13:57:33] 2025-06-04 17:57:08,185 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 13:57:33] 2025-06-04 17:57:08,869 | WARNING  | process 2600461 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 13:57:33] 2025-06-04 17:57:08,869 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6668234397/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:57:33] 2025-06-04 17:57:08,870 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6668234397/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:57:33] 2025-06-04 17:57:08,871 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2819975 B
[2025-06-04 13:57:33] 2025-06-04 17:57:08,871 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15542 B
[2025-06-04 13:57:33] 2025-06-04 17:57:08,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 13:57:33] 2025-06-04 17:57:12,656 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 13:57:33] 2025-06-04 17:57:12,662 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6668234397/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,664 | INFO     | extracted standard info from prmon json
[2025-06-04 13:57:33] 2025-06-04 17:57:12,664 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:57:33] 2025-06-04 17:57:12,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:57:33] 2025-06-04 17:57:12,665 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:57:33] 2025-06-04 17:57:12,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:57:33] 2025-06-04 17:57:12,667 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:57:33] 2025-06-04 17:57:12,667 | INFO     | sum of square deviations: 190403570.0
[2025-06-04 13:57:33] 2025-06-04 17:57:12,668 | INFO     | sum of deviations: -9198058179.0
[2025-06-04 13:57:33] 2025-06-04 17:57:12,668 | INFO     | mean x: 1749057091.0
[2025-06-04 13:57:33] 2025-06-04 17:57:12,668 | INFO     | mean y: 2275521.788235294
[2025-06-04 13:57:33] 2025-06-04 17:57:12,668 | INFO     | -- intersect: 84496116059.6022
[2025-06-04 13:57:33] 2025-06-04 17:57:12,668 | INFO     | intersect: 84496116059.6022
[2025-06-04 13:57:33] 2025-06-04 17:57:12,668 | INFO     | chi2: 0.10222640007414353
[2025-06-04 13:57:33] 2025-06-04 17:57:12,668 | INFO     | -- intersect: 84496116059.6022
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | current memory leak: -48.31 B/s (using 85 data points, chi2=0.10)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | ..............................
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | . Timing measurements:
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | . get job = 0 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | . initial setup = 3 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | . payload setup = 11 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | . stage-in = 0 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | . payload execution = 5602 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,669 | INFO     | . stage-out = 0 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,670 | INFO     | . log creation = 0 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,670 | INFO     | ..............................
[2025-06-04 13:57:33] 2025-06-04 17:57:12,702 | INFO     | sufficient remaining disk space (76108791808 B)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,702 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,703 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6668234397: 3125352 B (within 2537553920 B limit)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,703 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6668234397/HITS.44871837._081806.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,703 | INFO     | total size of present files: 0 B (workdir size: 3125352 B)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,703 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6668234397/HITS.44871837._081806.pool.root.1 since it does not exist
[2025-06-04 13:57:33] 2025-06-04 17:57:12,762 | INFO     | 
[2025-06-04 13:57:33] 2025-06-04 17:57:12,762 | INFO     | job summary report
[2025-06-04 13:57:33] 2025-06-04 17:57:12,762 | INFO     | --------------------------------------------------
[2025-06-04 13:57:33] 2025-06-04 17:57:12,762 | INFO     | PanDA job id: 6668234397
[2025-06-04 13:57:33] 2025-06-04 17:57:12,762 | INFO     | task id: 44871837
[2025-06-04 13:57:33] 2025-06-04 17:57:12,762 | INFO     | errors: (none)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,763 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:57:33] 2025-06-04 17:57:12,763 | INFO     | pilot state: finished 
[2025-06-04 13:57:33] 2025-06-04 17:57:12,763 | INFO     | transexitcode: 0
[2025-06-04 13:57:33] 2025-06-04 17:57:12,763 | INFO     | exeerrorcode: 0
[2025-06-04 13:57:33] 2025-06-04 17:57:12,763 | INFO     | exeerrordiag: 
[2025-06-04 13:57:33] 2025-06-04 17:57:12,763 | INFO     | exitcode: 0
[2025-06-04 13:57:33] 2025-06-04 17:57:12,764 | INFO     | exitmsg: OK
[2025-06-04 13:57:33] 2025-06-04 17:57:12,764 | INFO     | cpuconsumptiontime: 39886 s
[2025-06-04 13:57:33] 2025-06-04 17:57:12,764 | INFO     | nevents: 400
[2025-06-04 13:57:33] 2025-06-04 17:57:12,764 | INFO     | neventsw: 0
[2025-06-04 13:57:33] 2025-06-04 17:57:12,764 | INFO     | pid: 2600461
[2025-06-04 13:57:33] 2025-06-04 17:57:12,764 | INFO     | pgrp: 2600461
[2025-06-04 13:57:33] 2025-06-04 17:57:12,764 | INFO     | corecount: 8
[2025-06-04 13:57:33] 2025-06-04 17:57:12,765 | INFO     | event service: False
[2025-06-04 13:57:33] 2025-06-04 17:57:12,765 | INFO     | sizes: {0: 2397215, 1: 2397414, 8: 2397620, 12: 2397648, 5617: 2423979, 5619: 2433104, 5627: 2433246}
[2025-06-04 13:57:33] 2025-06-04 17:57:12,765 | INFO     | --------------------------------------------------
[2025-06-04 13:57:33] 2025-06-04 17:57:12,765 | INFO     | 
[2025-06-04 13:57:33] 2025-06-04 17:57:12,765 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 13:57:33] 2025-06-04 17:57:12,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,792 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,794 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:57:33] 2025-06-04 17:57:12,794 | INFO     | job 6668234397 has completed (purged errors)
[2025-06-04 13:57:33] 2025-06-04 17:57:12,794 | INFO     | overall cleanup function is called
[2025-06-04 13:57:33] 2025-06-04 17:57:13,248 | INFO     | number of running child processes to parent process 2600461: 1
[2025-06-04 13:57:33] 2025-06-04 17:57:13,248 | INFO     | maximum number of monitored processes: 6
[2025-06-04 13:57:33] 2025-06-04 17:57:13,248 | INFO     | aborting job monitoring since job object (job id=6668234397) has expired
[2025-06-04 13:57:33] 2025-06-04 17:57:13,806 | INFO     | --- collectZombieJob: --- 10, [2600461]
[2025-06-04 13:57:33] 2025-06-04 17:57:13,807 | INFO     | zombie collector waiting for pid 2600461
[2025-06-04 13:57:33] 2025-06-04 17:57:13,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:57:33] 2025-06-04 17:57:13,807 | INFO     | collected zombie processes
[2025-06-04 13:57:33] 2025-06-04 17:57:13,807 | INFO     | will attempt to kill all subprocesses of pid=2600461
[2025-06-04 13:57:33] 2025-06-04 17:57:14,847 | INFO     | PID=2575423 has CPU usage=17.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 13:57:33] 2025-06-04 17:57:14,847 | INFO     | .. there are 48 such processes running
[2025-06-04 13:57:33] 2025-06-04 17:57:14,855 | INFO     | process IDs to be killed: [2600461] (in reverse order)
[2025-06-04 13:57:33] 2025-06-04 17:57:15,041 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:57:33] 2025-06-04 17:57:15,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:57:33] 2025-06-04 17:57:15,065 | INFO     | did not find any defunct processes belonging to 2600461
[2025-06-04 13:57:33] 2025-06-04 17:57:15,088 | INFO     | did not find any defunct processes belonging to 2600461
[2025-06-04 13:57:33] 2025-06-04 17:57:15,088 | INFO     | ready for new job
[2025-06-04 13:57:33] 2025-06-04 17:57:15,089 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:57:33] 2025-06-04 17:57:15,091 | INFO     | **************************************
[2025-06-04 13:57:33] 2025-06-04 17:57:15,091 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:57:33] 2025-06-04 17:57:15,092 | INFO     | **************************************
[2025-06-04 13:57:33] 2025-06-04 17:57:15,092 | INFO     | 
[2025-06-04 13:57:33] 2025-06-04 17:57:15,110 | INFO     | architecture information:
[2025-06-04 13:57:33] 2025-06-04 17:57:15,110 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:57:33] 2025-06-04 17:57:15,129 | INFO     | cat /etc/os-release:
[2025-06-04 13:57:33] NAME="CentOS Linux"
[2025-06-04 13:57:33] VERSION="7 (Core)"
[2025-06-04 13:57:33] ID="centos"
[2025-06-04 13:57:33] ID_LIKE="rhel fedora"
[2025-06-04 13:57:33] VERSION_ID="7"
[2025-06-04 13:57:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:57:33] ANSI_COLOR="0;31"
[2025-06-04 13:57:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:57:33] HOME_URL="https://www.centos.org/"
[2025-06-04 13:57:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:57:33] 
[2025-06-04 13:57:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:57:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:57:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:57:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:57:33] 
[2025-06-04 13:57:33] 2025-06-04 17:57:15,130 | INFO     | **************************************
[2025-06-04 13:57:33] 2025-06-04 17:57:15,632 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 13:57:33] 2025-06-04 17:57:15,650 | INFO     | sufficient remaining disk space (76111937536 B)
[2025-06-04 13:57:33] 2025-06-04 17:57:15,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:57:33] 2025-06-04 17:57:15,650 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:57:33] 2025-06-04 17:57:15,650 | INFO     | update_server=False
[2025-06-04 13:57:33] 2025-06-04 17:57:15,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:57:33] 2025-06-04 17:57:15,650 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:57:33] 2025-06-04 17:57:15,651 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:57:33] 2025-06-04 17:57:15,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:57:33] 2025-06-04 17:57:15,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:57:33] 2025-06-04 17:57:15,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:57:33] 2025-06-04 17:57:15,752 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 13:57:33] 2025-06-04 17:57:15,752 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 13:57:33] 2025-06-04 17:57:15,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:57:33] 2025-06-04 17:57:15,752 | INFO     | will abort loop
[2025-06-04 13:57:33] 2025-06-04 17:57:15,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:57:33] 2025-06-04 17:57:16,584 | INFO     | all data control threads have been joined
[2025-06-04 13:57:33] 2025-06-04 17:57:16,597 | INFO     | all payload control threads have been joined
[2025-06-04 13:57:33] 2025-06-04 17:57:16,655 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:16,757 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:16,778 | INFO     | [job] validate thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:16,814 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:16,985 | INFO     | all job control threads have been joined
[2025-06-04 13:57:33] 2025-06-04 17:57:17,033 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:17,222 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:17,272 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:17,588 | INFO     | [data] control thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:17,603 | INFO     | [payload] control thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:17,656 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:17,777 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:57:33] 2025-06-04 17:57:17,857 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:17,990 | INFO     | [job] control thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:18,207 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:18,782 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:19,970 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:26,300 | INFO     | job.realtimelogging is not enabled
[2025-06-04 13:57:33] 2025-06-04 17:57:27,306 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:57:33] 2025-06-04 17:57:28,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518662248256)>', '<ExcThread(monitor, started 140518033975040)>']
[2025-06-04 13:57:33] 2025-06-04 17:57:28,717 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:57:33] 2025-06-04 17:57:28,717 | INFO     | [monitor] control thread has ended
[2025-06-04 13:57:33] 2025-06-04 17:57:33,041 | INFO     | all workflow threads have been joined
[2025-06-04 13:57:33] 2025-06-04 17:57:33,041 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:57:33] 2025-06-04 17:57:33,042 | INFO     | traces error code: 0
[2025-06-04 13:57:33] 2025-06-04 17:57:33,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:57:33] 2025-06-04 17:57:33,161 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:57:33] 2025-06-04 17:57:33,166 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:57:33] 2025-06-04 17:57:33,169 [wrapper] pilotpid: 2575423
[2025-06-04 13:57:33] 2025-06-04 17:57:33,172 [wrapper] Pilot exit status: 0
[2025-06-04 13:57:33] 2025-06-04 17:57:33,183 [wrapper] pandaids: 6668234397
[2025-06-04 13:57:33] 2025-06-04 17:57:33,309 [wrapper] cleanup supervisor_pilot 3291506 2575424
[2025-06-04 13:57:33] 2025-06-04 17:57:33,312 [wrapper] Test setup, not cleaning
[2025-06-04 13:57:33] 2025-06-04 17:57:33,316 [wrapper] apfmon messages muted
[2025-06-04 13:57:33] 2025-06-04 17:57:33,319 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:57:33] 2025-06-04 17:57:33,322 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:57:33]  *** Error codes and diagnostics ***
[2025-06-04 13:57:33]     "exeErrorCode": 0,
[2025-06-04 13:57:33]     "exeErrorDiag": "",
[2025-06-04 13:57:33]     "pilotErrorCode": 0,
[2025-06-04 13:57:33]     "pilotErrorDiag": "",
[2025-06-04 13:57:33]  *** Listing of results directory ***
[2025-06-04 13:57:33] total 417532
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas    495897 May 28 04:16 pilot3.tar.gz
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas      5111 May 28 04:57 queuedata.json
[2025-06-04 13:57:33] -rwx------. 1 boincer umatlas     37140 May 28 04:57 runpilot2-wrapper.sh
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas       100 Jun  4 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:57:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 12:22 run_atlas
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas       105 Jun  4 12:22 job.xml
[2025-06-04 13:57:33] -rw-r--r--. 2 boincer umatlas 224242674 Jun  4 12:22 EVNT.44871834._003195.pool.root.1
[2025-06-04 13:57:33] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 12:22 input.tar.gz
[2025-06-04 13:57:33] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 12:22 start_atlas.sh
[2025-06-04 13:57:33] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 12:22 shared
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas         0 Jun  4 12:22 boinc_lockfile
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas      2556 Jun  4 12:22 pandaJob.out
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas    990984 Jun  4 12:23 agis_schedconf.cvmfs.json
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas   1598969 Jun  4 12:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:57:33] drwx------. 4 boincer umatlas      4096 Jun  4 12:23 pilot3
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas      6933 Jun  4 13:55 init_data.xml
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas        95 Jun  4 13:56 pilot_heartbeat.json
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas       529 Jun  4 13:56 boinc_task_state.xml
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas 197788913 Jun  4 13:56 HITS.44871837._081806.pool.root.1
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas      1035 Jun  4 13:57 memory_monitor_summary.json
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas    300665 Jun  4 13:57 log.44871837._081806.job.log.tgz.1
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas      7688 Jun  4 13:57 heartbeat.json
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas        27 Jun  4 13:57 wrapper_checkpoint.txt
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 13:57 boinc_mmap_file
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas      4734 Jun  4 13:57 pilotlog.txt
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas    542136 Jun  4 13:57 log.44871837._081806.job.log.1
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas       357 Jun  4 13:57 output.list
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas       620 Jun  4 13:57 runtime_log
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas    860160 Jun  4 13:57 result.tar.gz
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas       652 Jun  4 13:57 85aKDmqmRe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUjbKDmTnjaSm.diag
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 13:57 runtime_log.err
[2025-06-04 13:57:33] -rw-r--r--. 1 boincer umatlas     22541 Jun  4 13:57 stderr.txt
[2025-06-04 13:57:33] HITS file was successfully produced:
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas 197788913 Jun  4 13:56 shared/HITS.pool.root.1
[2025-06-04 13:57:33]  *** Contents of shared directory: ***
[2025-06-04 13:57:33] total 413508
[2025-06-04 13:57:33] -rw-r--r--. 2 boincer umatlas 224242674 Jun  4 12:22 ATLAS.root_0
[2025-06-04 13:57:33] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 12:22 input.tar.gz
[2025-06-04 13:57:33] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 12:22 start_atlas.sh
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas 197788913 Jun  4 13:56 HITS.pool.root.1
[2025-06-04 13:57:33] -rw-------. 1 boincer umatlas    860160 Jun  4 13:57 result.tar.gz
13:57:35 (2568328): run_atlas exited; CPU time 40031.702284
13:57:35 (2568328): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN