Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:22:39 (2564876): wrapper (7.7.26015): starting
12:22:39 (2564876): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 12:22:39] Arguments: --nthreads 8
[2025-06-04 12:22:39] Threads: 8
[2025-06-04 12:22:39] Checking for CVMFS
[2025-06-04 12:22:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:22:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:22:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:22:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:22:40] 2.12.6.0 5755 1572 260316 146788 1 329 30234236 32935937 32893 16776704 0 23494973 99.682 15206064 22239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 12:22:40] CVMFS is ok
[2025-06-04 12:22:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:22:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 12:22:40] Further information can be found at the LHC@home message board.
[2025-06-04 12:22:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:22:40] Checking for apptainer binary...
[2025-06-04 12:22:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 12:22:40] Running /usr/bin/apptainer --version
[2025-06-04 12:22:40] apptainer version 1.4.1-1.el9
[2025-06-04 12:22:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:22:40] c7-3-34.aglt2.org
[2025-06-04 12:22:40] apptainer works
[2025-06-04 12:22:40] Set ATHENA_PROC_NUMBER=8
[2025-06-04 12:22:40] Set ATHENA_CORE_NUMBER=8
[2025-06-04 12:22:40] Starting ATLAS job with PandaID=6668044097
[2025-06-04 12:22:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:52:41]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:52:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 13:52:41]  is_altstaged=None
[2025-06-04 13:52:41]  is_tar=False
[2025-06-04 13:52:41]  lfn=log.44871837._078979.job.log.tgz.1
[2025-06-04 13:52:41]  mtime=0
[2025-06-04 13:52:41]  protocol_id=None
[2025-06-04 13:52:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 13:52:41]  replicas=None
[2025-06-04 13:52:41]  scope=mc23_13p6TeV
[2025-06-04 13:52:41]  status=None
[2025-06-04 13:52:41]  status_code=0
[2025-06-04 13:52:41]  storage_token=
[2025-06-04 13:52:41]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6668044097/log.44871837._078979.job.log.tgz.1
[2025-06-04 13:52:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/54/log.44871837._078979.job.log.tgz.1
[2025-06-04 13:52:41]  workdir=None
[2025-06-04 13:52:41] ]
[2025-06-04 13:52:41] 2025-06-04 17:52:13,168 | INFO     | transferring file log.44871837._078979.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6668044097/log.44871837._078979.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 13:52:41] 2025-06-04 17:52:13,168 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6668044097/log.44871837._078979.job.log.tgz.1 /tmp/boinchome/slots/1/log.44871837._078979.job
[2025-06-04 13:52:41] 2025-06-04 17:52:13,187 | INFO     | adding to output.list: log.44871837._078979.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/54/log.44871837._078979.job.log.tg
[2025-06-04 13:52:41] 2025-06-04 17:52:13,188 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 13:52:41] 2025-06-04 17:52:13,188 | INFO     | summary of transferred files:
[2025-06-04 13:52:41] 2025-06-04 17:52:13,188 | INFO     |  -- lfn=log.44871837._078979.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 13:52:41] 2025-06-04 17:52:13,189 | INFO     | stage-out finished correctly
[2025-06-04 13:52:41] 2025-06-04 17:52:14,626 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 13:52:41] 2025-06-04 17:52:15,119 | INFO     | monitor loop #388: job 0:6668044097 is in state 'finished'
[2025-06-04 13:52:41] 2025-06-04 17:52:15,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:52:41] 2025-06-04 17:52:16,520 | INFO     | job 6668044097 has state=finished
[2025-06-04 13:52:41] 2025-06-04 17:52:16,520 | INFO     | preparing for final server update for job 6668044097 in state='finished'
[2025-06-04 13:52:41] 2025-06-04 17:52:16,521 | INFO     | this job has now completed (state=finished)
[2025-06-04 13:52:41] 2025-06-04 17:52:16,521 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 13:52:41] 2025-06-04 17:52:16,521 | INFO     | log transfer has been attempted: DONE
[2025-06-04 13:52:41] 2025-06-04 17:52:16,521 | INFO     | job 6668044097 has finished - writing final server update
[2025-06-04 13:52:41] 2025-06-04 17:52:16,522 | INFO     | total number of processed events: 400 (read)
[2025-06-04 13:52:41] 2025-06-04 17:52:16,542 | INFO     | executing command: lscpu
[2025-06-04 13:52:41] 2025-06-04 17:52:16,623 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 13:52:41] 2025-06-04 17:52:17,621 | INFO     | monitor loop #389: job 0:6668044097 is in state 'finished'
[2025-06-04 13:52:41] 2025-06-04 17:52:17,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:52:41] 2025-06-04 17:52:20,124 | INFO     | monitor loop #390: job 0:6668044097 is in state 'finished'
[2025-06-04 13:52:41] 2025-06-04 17:52:20,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:52:41] 2025-06-04 17:52:21,137 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 13:52:41] 2025-06-04 17:52:21,138 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668044097/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:52:41] 2025-06-04 17:52:21,138 | INFO     | extracted standard info from prmon json
[2025-06-04 13:52:41] 2025-06-04 17:52:21,138 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:52:41] 2025-06-04 17:52:21,138 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:52:41] 2025-06-04 17:52:21,139 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:52:41] 2025-06-04 17:52:21,139 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:52:41] 2025-06-04 17:52:21,140 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:52:41] 2025-06-04 17:52:21,141 | INFO     | sum of square deviations: 164765880.0
[2025-06-04 13:52:41] 2025-06-04 17:52:21,141 | INFO     | sum of deviations: -9297589194.999998
[2025-06-04 13:52:41] 2025-06-04 17:52:21,141 | INFO     | mean x: 1749056960.0
[2025-06-04 13:52:41] 2025-06-04 17:52:21,141 | INFO     | mean y: 2280379.234567901
[2025-06-04 13:52:41] 2025-06-04 17:52:21,141 | INFO     | -- intersect: 98699978547.90605
[2025-06-04 13:52:41] 2025-06-04 17:52:21,141 | INFO     | intersect: 98699978547.90605
[2025-06-04 13:52:41] 2025-06-04 17:52:21,141 | INFO     | chi2: 0.07103797072720551
[2025-06-04 13:52:41] 2025-06-04 17:52:21,142 | INFO     | -- intersect: 98699978547.90605
[2025-06-04 13:52:41] 2025-06-04 17:52:21,142 | INFO     | current memory leak: -56.43 B/s (using 81 data points, chi2=0.07)
[2025-06-04 13:52:41] 2025-06-04 17:52:21,142 | INFO     | ..............................
[2025-06-04 13:52:41] 2025-06-04 17:52:21,142 | INFO     | . Timing measurements:
[2025-06-04 13:52:41] 2025-06-04 17:52:21,142 | INFO     | . get job = 0 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,142 | INFO     | . initial setup = 3 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,142 | INFO     | . payload setup = 12 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,143 | INFO     | . stage-in = 0 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,143 | INFO     | . payload execution = 5322 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,143 | INFO     | . stage-out = 0 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,143 | INFO     | . log creation = 0 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,143 | INFO     | ..............................
[2025-06-04 13:52:41] 2025-06-04 17:52:21,224 | INFO     | 
[2025-06-04 13:52:41] 2025-06-04 17:52:21,224 | INFO     | job summary report
[2025-06-04 13:52:41] 2025-06-04 17:52:21,224 | INFO     | --------------------------------------------------
[2025-06-04 13:52:41] 2025-06-04 17:52:21,224 | INFO     | PanDA job id: 6668044097
[2025-06-04 13:52:41] 2025-06-04 17:52:21,224 | INFO     | task id: 44871837
[2025-06-04 13:52:41] 2025-06-04 17:52:21,224 | INFO     | errors: (none)
[2025-06-04 13:52:41] 2025-06-04 17:52:21,224 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | pilot state: finished 
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | transexitcode: 0
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | exeerrorcode: 0
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | exeerrordiag: 
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | exitcode: 0
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | exitmsg: OK
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | cpuconsumptiontime: 38442 s
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | nevents: 400
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | neventsw: 0
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | pid: 2589708
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | pgrp: 2589708
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | corecount: 8
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | event service: False
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | sizes: {0: 2397221, 1: 2397420, 8: 2397626, 12: 2397654, 5338: 2432893, 5340: 2432893, 5346: 2433191}
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | --------------------------------------------------
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | 
[2025-06-04 13:52:41] 2025-06-04 17:52:21,225 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,245 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:52:41] 2025-06-04 17:52:21,246 | INFO     | job 6668044097 has completed (purged errors)
[2025-06-04 13:52:41] 2025-06-04 17:52:21,247 | INFO     | overall cleanup function is called
[2025-06-04 13:52:41] 2025-06-04 17:52:22,254 | INFO     | --- collectZombieJob: --- 10, [2589708]
[2025-06-04 13:52:41] 2025-06-04 17:52:22,254 | INFO     | zombie collector waiting for pid 2589708
[2025-06-04 13:52:41] 2025-06-04 17:52:22,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:52:41] 2025-06-04 17:52:22,255 | INFO     | collected zombie processes
[2025-06-04 13:52:41] 2025-06-04 17:52:22,255 | INFO     | will attempt to kill all subprocesses of pid=2589708
[2025-06-04 13:52:41] 2025-06-04 17:52:22,797 | INFO     | process IDs to be killed: [2589708] (in reverse order)
[2025-06-04 13:52:41] 2025-06-04 17:52:22,966 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:52:41] 2025-06-04 17:52:22,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:52:41] 2025-06-04 17:52:22,988 | INFO     | did not find any defunct processes belonging to 2589708
[2025-06-04 13:52:41] 2025-06-04 17:52:23,012 | INFO     | did not find any defunct processes belonging to 2589708
[2025-06-04 13:52:41] 2025-06-04 17:52:23,013 | INFO     | ready for new job
[2025-06-04 13:52:41] 2025-06-04 17:52:23,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:52:41] 2025-06-04 17:52:23,015 | INFO     | **************************************
[2025-06-04 13:52:41] 2025-06-04 17:52:23,015 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:52:41] 2025-06-04 17:52:23,015 | INFO     | **************************************
[2025-06-04 13:52:41] 2025-06-04 17:52:23,015 | INFO     | 
[2025-06-04 13:52:41] 2025-06-04 17:52:23,034 | INFO     | architecture information:
[2025-06-04 13:52:41] 2025-06-04 17:52:23,034 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:52:41] 2025-06-04 17:52:23,054 | INFO     | cat /etc/os-release:
[2025-06-04 13:52:41] NAME="CentOS Linux"
[2025-06-04 13:52:41] VERSION="7 (Core)"
[2025-06-04 13:52:41] ID="centos"
[2025-06-04 13:52:41] ID_LIKE="rhel fedora"
[2025-06-04 13:52:41] VERSION_ID="7"
[2025-06-04 13:52:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:52:41] ANSI_COLOR="0;31"
[2025-06-04 13:52:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:52:41] HOME_URL="https://www.centos.org/"
[2025-06-04 13:52:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:52:41] 
[2025-06-04 13:52:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:52:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:52:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:52:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:52:41] 
[2025-06-04 13:52:41] 2025-06-04 17:52:23,055 | INFO     | **************************************
[2025-06-04 13:52:41] 2025-06-04 17:52:23,559 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 13:52:41] 2025-06-04 17:52:23,578 | INFO     | sufficient remaining disk space (75486986240 B)
[2025-06-04 13:52:41] 2025-06-04 17:52:23,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:52:41] 2025-06-04 17:52:23,579 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:52:41] 2025-06-04 17:52:23,579 | INFO     | update_server=False
[2025-06-04 13:52:41] 2025-06-04 17:52:23,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:52:41] 2025-06-04 17:52:23,579 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:52:41] 2025-06-04 17:52:23,580 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:52:41] 2025-06-04 17:52:23,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:52:41] 2025-06-04 17:52:23,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:52:41] 2025-06-04 17:52:23,636 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:52:41] 2025-06-04 17:52:23,636 | INFO     | aborting loop
[2025-06-04 13:52:41] 2025-06-04 17:52:23,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:52:41] 2025-06-04 17:52:23,922 | INFO     | all job control threads have been joined
[2025-06-04 13:52:41] 2025-06-04 17:52:23,965 | INFO     | all payload control threads have been joined
[2025-06-04 13:52:41] 2025-06-04 17:52:24,117 | INFO     | all data control threads have been joined
[2025-06-04 13:52:41] 2025-06-04 17:52:24,584 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:24,627 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:24,642 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:24,807 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:24,821 | INFO     | [job] validate thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:24,909 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:24,927 | INFO     | [job] control thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:24,970 | INFO     | [payload] control thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:25,123 | INFO     | [data] control thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:25,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:52:41] 2025-06-04 17:52:25,613 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:25,614 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:25,790 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:25,799 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:26,239 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:52:41] 2025-06-04 17:52:27,245 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:29,226 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:33,931 | INFO     | job.realtimelogging is not enabled
[2025-06-04 13:52:41] 2025-06-04 17:52:34,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:52:41] 2025-06-04 17:52:36,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820368250688)>', '<ExcThread(monitor, started 139819506202368)>']
[2025-06-04 13:52:41] 2025-06-04 17:52:36,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:52:41] 2025-06-04 17:52:36,651 | INFO     | [monitor] control thread has ended
[2025-06-04 13:52:41] 2025-06-04 17:52:41,203 | INFO     | all workflow threads have been joined
[2025-06-04 13:52:41] 2025-06-04 17:52:41,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:52:41] 2025-06-04 17:52:41,204 | INFO     | traces error code: 0
[2025-06-04 13:52:41] 2025-06-04 17:52:41,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:52:41] 2025-06-04 17:52:41,339 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:52:41] 2025-06-04 17:52:41,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:52:41] 2025-06-04 17:52:41,345 [wrapper] pilotpid: 2569120
[2025-06-04 13:52:41] 2025-06-04 17:52:41,347 [wrapper] Pilot exit status: 0
[2025-06-04 13:52:41] 2025-06-04 17:52:41,357 [wrapper] pandaids: 6668044097
[2025-06-04 13:52:41] 2025-06-04 17:52:41,482 [wrapper] cleanup supervisor_pilot 3157430 2569121
[2025-06-04 13:52:41] 2025-06-04 17:52:41,485 [wrapper] Test setup, not cleaning
[2025-06-04 13:52:41] 2025-06-04 17:52:41,487 [wrapper] apfmon messages muted
[2025-06-04 13:52:41] 2025-06-04 17:52:41,489 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:52:41] 2025-06-04 17:52:41,493 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:52:41]  *** Error codes and diagnostics ***
[2025-06-04 13:52:41]     "exeErrorCode": 0,
[2025-06-04 13:52:41]     "exeErrorDiag": "",
[2025-06-04 13:52:41]     "pilotErrorCode": 0,
[2025-06-04 13:52:41]     "pilotErrorDiag": "",
[2025-06-04 13:52:41]  *** Listing of results directory ***
[2025-06-04 13:52:41] total 410484
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas    495897 May 28 00:31 pilot3.tar.gz
[2025-06-04 13:52:41] -rwx------. 1 boincer umatlas     37140 May 28 01:05 runpilot2-wrapper.sh
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas      5111 May 28 01:05 queuedata.json
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas       100 Jun  4 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:52:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 12:22 run_atlas
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas       105 Jun  4 12:22 job.xml
[2025-06-04 13:52:41] -rw-r--r--. 2 boincer umatlas 222813265 Jun  4 12:22 EVNT.44871834._003087.pool.root.1
[2025-06-04 13:52:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 12:22 start_atlas.sh
[2025-06-04 13:52:41] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 12:22 shared
[2025-06-04 13:52:41] -rw-r--r--. 2 boincer umatlas    508871 Jun  4 12:22 input.tar.gz
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas         0 Jun  4 12:22 boinc_lockfile
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 12:22 pandaJob.out
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas    990984 Jun  4 12:22 agis_schedconf.cvmfs.json
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas   1598969 Jun  4 12:22 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:52:41] drwx------. 4 boincer umatlas      4096 Jun  4 12:22 pilot3
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas      6933 Jun  4 13:46 init_data.xml
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas       529 Jun  4 13:51 boinc_task_state.xml
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas 192048085 Jun  4 13:51 HITS.44871837._078979.pool.root.1
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas      1033 Jun  4 13:52 memory_monitor_summary.json
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas    304854 Jun  4 13:52 log.44871837._078979.job.log.tgz.1
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas        95 Jun  4 13:52 pilot_heartbeat.json
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas      7689 Jun  4 13:52 heartbeat.json
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 13:52 boinc_mmap_file
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas        27 Jun  4 13:52 wrapper_checkpoint.txt
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas      4548 Jun  4 13:52 pilotlog.txt
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas    515701 Jun  4 13:52 log.44871837._078979.job.log.1
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas       357 Jun  4 13:52 output.list
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas       620 Jun  4 13:52 runtime_log
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas    839680 Jun  4 13:52 result.tar.gz
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas       652 Jun  4 13:52 wWbMDmr9Ne7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAJbKDmvVOJ6m.diag
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 13:52 runtime_log.err
[2025-06-04 13:52:41] -rw-r--r--. 1 boincer umatlas     21358 Jun  4 13:52 stderr.txt
[2025-06-04 13:52:41] HITS file was successfully produced:
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas 192048085 Jun  4 13:51 shared/HITS.pool.root.1
[2025-06-04 13:52:41]  *** Contents of shared directory: ***
[2025-06-04 13:52:41] total 406484
[2025-06-04 13:52:41] -rw-r--r--. 2 boincer umatlas 222813265 Jun  4 12:22 ATLAS.root_0
[2025-06-04 13:52:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 12:22 start_atlas.sh
[2025-06-04 13:52:41] -rw-r--r--. 2 boincer umatlas    508871 Jun  4 12:22 input.tar.gz
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas 192048085 Jun  4 13:51 HITS.pool.root.1
[2025-06-04 13:52:41] -rw-------. 1 boincer umatlas    839680 Jun  4 13:52 result.tar.gz
13:52:43 (2564876): run_atlas exited; CPU time 38627.407629
13:52:43 (2564876): called boinc_finish(0)

</stderr_txt>
]]>

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