Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:08:09 (4034973): wrapper (7.7.26015): starting
12:08:09 (4034973): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 12:08:09] Arguments: --nthreads 10
[2025-06-04 12:08:09] Threads: 10
[2025-06-04 12:08:09] Checking for CVMFS
[2025-06-04 12:08:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:08:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:08:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:08:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:08:09] 2.12.6.0 1583849 139742 461416 146786 3 641 31665653 32935937 15466 130560 1 365481535 99.629 370569511 20401 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 12:08:09] CVMFS is ok
[2025-06-04 12:08:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:08:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 12:08:09] Further information can be found at the LHC@home message board.
[2025-06-04 12:08:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:08:09] Checking for apptainer binary...
[2025-06-04 12:08:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 12:08:09] Running /usr/bin/apptainer --version
[2025-06-04 12:08:09] apptainer version 1.4.1-1.el9
[2025-06-04 12:08:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:08:10] c-6-7.aglt2.org
[2025-06-04 12:08:10] apptainer works
[2025-06-04 12:08:10] Set ATHENA_PROC_NUMBER=10
[2025-06-04 12:08:10] Set ATHENA_CORE_NUMBER=10
[2025-06-04 12:08:10] Starting ATLAS job with PandaID=6677376750
[2025-06-04 12:08:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:57:01]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:57:01] 2025-06-04 17:56:49,422 | INFO     | extracted standard info from prmon json
[2025-06-04 13:57:01] 2025-06-04 17:56:49,422 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:57:01] 2025-06-04 17:56:49,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:57:01] 2025-06-04 17:56:49,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:57:01] 2025-06-04 17:56:49,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:57:01] 2025-06-04 17:56:49,425 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:57:01] 2025-06-04 17:56:49,425 | INFO     | sum of square deviations: 379929156.20560783
[2025-06-04 13:57:01] 2025-06-04 17:56:49,426 | INFO     | sum of deviations: 10175105868.1028
[2025-06-04 13:57:01] 2025-06-04 17:56:49,426 | INFO     | mean x: 1749056562.6542056
[2025-06-04 13:57:01] 2025-06-04 17:56:49,426 | INFO     | mean y: 2202921.3271028036
[2025-06-04 13:57:01] 2025-06-04 17:56:49,426 | INFO     | -- intersect: -46840308119.53477
[2025-06-04 13:57:01] 2025-06-04 17:56:49,426 | INFO     | intersect: -46840308119.53477
[2025-06-04 13:57:01] 2025-06-04 17:56:49,427 | INFO     | chi2: 2.0288759203735793
[2025-06-04 13:57:01] 2025-06-04 17:56:49,427 | INFO     | sum of square deviations: 329149551.4607834
[2025-06-04 13:57:01] 2025-06-04 17:56:49,428 | INFO     | sum of deviations: 16117454036.931364
[2025-06-04 13:57:01] 2025-06-04 17:56:49,428 | INFO     | mean x: 1749056410.1862745
[2025-06-04 13:57:01] 2025-06-04 17:56:49,428 | INFO     | mean y: 2220069.9509803923
[2025-06-04 13:57:01] 2025-06-04 17:56:49,428 | INFO     | -- intersect: -85643761138.49127
[2025-06-04 13:57:01] 2025-06-04 17:56:49,428 | INFO     | intersect: -85643761138.49127
[2025-06-04 13:57:01] 2025-06-04 17:56:49,428 | INFO     | chi2: 1.3521666568983908
[2025-06-04 13:57:01] 2025-06-04 17:56:49,429 | INFO     | current chi2=1.3521666568983908 (change=33.35390088076876 %)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,429 | INFO     | sum of square deviations: 283082867.4432984
[2025-06-04 13:57:01] 2025-06-04 17:56:49,429 | INFO     | sum of deviations: 15471788556.64948
[2025-06-04 13:57:01] 2025-06-04 17:56:49,429 | INFO     | mean x: 1749056257.670103
[2025-06-04 13:57:01] 2025-06-04 17:56:49,430 | INFO     | mean y: 2217965.0515463916
[2025-06-04 13:57:01] 2025-06-04 17:56:49,430 | INFO     | -- intersect: -95591799563.32042
[2025-06-04 13:57:01] 2025-06-04 17:56:49,430 | INFO     | intersect: -95591799563.32042
[2025-06-04 13:57:01] 2025-06-04 17:56:49,430 | INFO     | chi2: 1.348914958112418
[2025-06-04 13:57:01] 2025-06-04 17:56:49,430 | INFO     | current chi2=1.348914958112418 (change=0.24048062192507583 %)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,430 | INFO     | right removable region: 96
[2025-06-04 13:57:01] 2025-06-04 17:56:49,431 | INFO     | sum of square deviations: 329106851.4607834
[2025-06-04 13:57:01] 2025-06-04 17:56:49,431 | INFO     | sum of deviations: -4250499553.745098
[2025-06-04 13:57:01] 2025-06-04 17:56:49,431 | INFO     | mean x: 1749056715.1862745
[2025-06-04 13:57:01] 2025-06-04 17:56:49,431 | INFO     | mean y: 2245493.0392156863
[2025-06-04 13:57:01] 2025-06-04 17:56:49,432 | INFO     | -- intersect: 22591762406.39345
[2025-06-04 13:57:01] 2025-06-04 17:56:49,432 | INFO     | intersect: 22591762406.39345
[2025-06-04 13:57:01] 2025-06-04 17:56:49,432 | INFO     | chi2: 0.7330348174906387
[2025-06-04 13:57:01] 2025-06-04 17:56:49,432 | INFO     | current chi2=0.7330348174906387 (change=63.86990401287507 %)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,432 | INFO     | sum of square deviations: 283028821.4845368
[2025-06-04 13:57:01] 2025-06-04 17:56:49,433 | INFO     | sum of deviations: -4433977051.484536
[2025-06-04 13:57:01] 2025-06-04 17:56:49,433 | INFO     | mean x: 1749056867.7216494
[2025-06-04 13:57:01] 2025-06-04 17:56:49,433 | INFO     | mean y: 2246039.2783505153
[2025-06-04 13:57:01] 2025-06-04 17:56:49,433 | INFO     | -- intersect: 27403264679.505154
[2025-06-04 13:57:01] 2025-06-04 17:56:49,433 | INFO     | intersect: 27403264679.505154
[2025-06-04 13:57:01] 2025-06-04 17:56:49,433 | INFO     | chi2: 0.7262015975760061
[2025-06-04 13:57:01] 2025-06-04 17:56:49,433 | INFO     | current chi2=0.7262015975760061 (change=0.932182176287944 %)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,434 | INFO     | left removable region: 20
[2025-06-04 13:57:01] 2025-06-04 17:56:49,434 | INFO     | sum of square deviations: 136123791.10526344
[2025-06-04 13:57:01] 2025-06-04 17:56:49,434 | INFO     | sum of deviations: 513516191.60526335
[2025-06-04 13:57:01] 2025-06-04 17:56:49,434 | INFO     | mean x: 1749056837.3421052
[2025-06-04 13:57:01] 2025-06-04 17:56:49,434 | INFO     | mean y: 2272529.5921052634
[2025-06-04 13:57:01] 2025-06-04 17:56:49,434 | INFO     | -- intersect: -6595905487.052446
[2025-06-04 13:57:01] 2025-06-04 17:56:49,434 | INFO     | intersect: -6595905487.052446
[2025-06-04 13:57:01] 2025-06-04 17:56:49,435 | INFO     | chi2: 0.025199197631025745
[2025-06-04 13:57:01] 2025-06-04 17:56:49,435 | INFO     | -- intersect: -6595905487.052446
[2025-06-04 13:57:01] 2025-06-04 17:56:49,435 | INFO     | current memory leak: 3.77 B/s (using 76 data points, chi2=0.03)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,435 | INFO     | ..............................
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . Timing measurements:
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . get job = 0 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . initial setup = 2 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . payload setup = 7 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . stage-in = 0 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . payload execution = 6471 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . stage-out = 0 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | . log creation = 0 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,436 | INFO     | ..............................
[2025-06-04 13:57:01] 2025-06-04 17:56:49,523 | INFO     | 
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | job summary report
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | --------------------------------------------------
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | PanDA job id: 6677376750
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | task id: 45006595
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | errors: (none)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | pilot state: finished 
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | transexitcode: 0
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | exeerrorcode: 0
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | exeerrordiag: 
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | exitcode: 0
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | exitmsg: OK
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | cpuconsumptiontime: 43208 s
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | nevents: 400
[2025-06-04 13:57:01] 2025-06-04 17:56:49,524 | INFO     | neventsw: 0
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | pid: 4053479
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | pgrp: 4053479
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | corecount: 10
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | event service: False
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | sizes: {0: 2397103, 1: 2397358, 5: 2397564, 12: 2397620, 6482: 2424593, 6483: 2424592, 6485: 2433717, 6487: 2433773, 6492: 2433943}
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | --------------------------------------------------
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | 
[2025-06-04 13:57:01] 2025-06-04 17:56:49,525 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,540 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | job 6677376750 has completed (purged errors)
[2025-06-04 13:57:01] 2025-06-04 17:56:49,541 | INFO     | overall cleanup function is called
[2025-06-04 13:57:01] 2025-06-04 17:56:50,548 | INFO     | --- collectZombieJob: --- 10, [4053479]
[2025-06-04 13:57:01] 2025-06-04 17:56:50,548 | INFO     | zombie collector waiting for pid 4053479
[2025-06-04 13:57:01] 2025-06-04 17:56:50,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:57:01] 2025-06-04 17:56:50,549 | INFO     | collected zombie processes
[2025-06-04 13:57:01] 2025-06-04 17:56:50,549 | INFO     | will attempt to kill all subprocesses of pid=4053479
[2025-06-04 13:57:01] 2025-06-04 17:56:50,902 | INFO     | process IDs to be killed: [4053479] (in reverse order)
[2025-06-04 13:57:01] 2025-06-04 17:56:51,011 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:57:01] 2025-06-04 17:56:51,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:57:01] 2025-06-04 17:56:51,026 | INFO     | did not find any defunct processes belonging to 4053479
[2025-06-04 13:57:01] 2025-06-04 17:56:51,040 | INFO     | did not find any defunct processes belonging to 4053479
[2025-06-04 13:57:01] 2025-06-04 17:56:51,041 | INFO     | ready for new job
[2025-06-04 13:57:01] 2025-06-04 17:56:51,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:57:01] 2025-06-04 17:56:51,043 | INFO     | **************************************
[2025-06-04 13:57:01] 2025-06-04 17:56:51,043 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:57:01] 2025-06-04 17:56:51,043 | INFO     | **************************************
[2025-06-04 13:57:01] 2025-06-04 17:56:51,043 | INFO     | 
[2025-06-04 13:57:01] 2025-06-04 17:56:51,057 | INFO     | architecture information:
[2025-06-04 13:57:01] 2025-06-04 17:56:51,058 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:57:01] 2025-06-04 17:56:51,072 | INFO     | cat /etc/os-release:
[2025-06-04 13:57:01] NAME="CentOS Linux"
[2025-06-04 13:57:01] VERSION="7 (Core)"
[2025-06-04 13:57:01] ID="centos"
[2025-06-04 13:57:01] ID_LIKE="rhel fedora"
[2025-06-04 13:57:01] VERSION_ID="7"
[2025-06-04 13:57:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:57:01] ANSI_COLOR="0;31"
[2025-06-04 13:57:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:57:01] HOME_URL="https://www.centos.org/"
[2025-06-04 13:57:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:57:01] 
[2025-06-04 13:57:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:57:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:57:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:57:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:57:01] 
[2025-06-04 13:57:01] 2025-06-04 17:56:51,072 | INFO     | **************************************
[2025-06-04 13:57:01] 2025-06-04 17:56:51,575 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 13:57:01] 2025-06-04 17:56:51,594 | INFO     | sufficient remaining disk space (76592185344 B)
[2025-06-04 13:57:01] 2025-06-04 17:56:51,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:57:01] 2025-06-04 17:56:51,595 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:57:01] 2025-06-04 17:56:51,595 | INFO     | update_server=False
[2025-06-04 13:57:01] 2025-06-04 17:56:51,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:57:01] 2025-06-04 17:56:51,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:57:01] 2025-06-04 17:56:51,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:57:01] 2025-06-04 17:56:51,596 | INFO     | aborting loop
[2025-06-04 13:57:01] 2025-06-04 17:56:51,838 | INFO     | all payload control threads have been joined
[2025-06-04 13:57:01] 2025-06-04 17:56:52,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:57:01] 2025-06-04 17:56:52,266 | INFO     | all data control threads have been joined
[2025-06-04 13:57:01] 2025-06-04 17:56:52,321 | INFO     | PID=4039943 has CPU usage=13.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 13:57:01] 2025-06-04 17:56:52,321 | INFO     | .. there are 31 such processes running
[2025-06-04 13:57:01] 2025-06-04 17:56:52,321 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:57:01] 2025-06-04 17:56:52,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:57:01] 2025-06-04 17:56:52,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:57:01] 2025-06-04 17:56:52,597 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:52,601 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:52,710 | INFO     | all job control threads have been joined
[2025-06-04 13:57:01] 2025-06-04 17:56:52,721 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:52,842 | INFO     | [payload] control thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:52,855 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:52,947 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:53,062 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:53,173 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:53,235 | INFO     | [job] validate thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:53,271 | INFO     | [data] control thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:53,715 | INFO     | [job] control thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:53,945 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:54,035 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:54,261 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:54,534 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:57:01] 2025-06-04 17:56:55,538 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:55,601 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:57:01] 2025-06-04 17:56:56,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648669562688)>', '<ExcThread(monitor, started 140648317425408)>']
[2025-06-04 13:57:01] 2025-06-04 17:56:57,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:57:01] 2025-06-04 17:56:57,346 | INFO     | [monitor] control thread has ended
[2025-06-04 13:57:01] 2025-06-04 17:57:01,386 | INFO     | all workflow threads have been joined
[2025-06-04 13:57:01] 2025-06-04 17:57:01,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:57:01] 2025-06-04 17:57:01,387 | INFO     | traces error code: 0
[2025-06-04 13:57:01] 2025-06-04 17:57:01,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:57:01] 2025-06-04 17:57:01,530 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:57:01] 2025-06-04 17:57:01,533 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:57:01] 2025-06-04 17:57:01,535 [wrapper] pilotpid: 4039943
[2025-06-04 13:57:01] 2025-06-04 17:57:01,537 [wrapper] Pilot exit status: 0
[2025-06-04 13:57:01] 2025-06-04 17:57:01,546 [wrapper] pandaids: 6677376750
[2025-06-04 13:57:01] 2025-06-04 17:57:01,595 [wrapper] cleanup supervisor_pilot  366982 4039944
[2025-06-04 13:57:01] 2025-06-04 17:57:01,599 [wrapper] Test setup, not cleaning
[2025-06-04 13:57:01] 2025-06-04 17:57:01,602 [wrapper] apfmon messages muted
[2025-06-04 13:57:01] 2025-06-04 17:57:01,604 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:57:01] 2025-06-04 17:57:01,606 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:57:01]  *** Error codes and diagnostics ***
[2025-06-04 13:57:01]     "exeErrorCode": 0,
[2025-06-04 13:57:01]     "exeErrorDiag": "",
[2025-06-04 13:57:01]     "pilotErrorCode": 0,
[2025-06-04 13:57:01]     "pilotErrorDiag": "",
[2025-06-04 13:57:01]  *** Listing of results directory ***
[2025-06-04 13:57:01] total 394268
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas    495897 Jun  2 11:48 pilot3.tar.gz
[2025-06-04 13:57:01] -rwx------. 1 boincer umatlas     37140 Jun  2 11:49 runpilot2-wrapper.sh
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas      5111 Jun  2 11:49 queuedata.json
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas       100 Jun  4 12:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:57:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 12:08 run_atlas
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas       105 Jun  4 12:08 job.xml
[2025-06-04 13:57:01] -rw-r--r--. 2 boincer umatlas 214886623 Jun  4 12:08 EVNT.45006593._000019.pool.root.1
[2025-06-04 13:57:01] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 12:08 start_atlas.sh
[2025-06-04 13:57:01] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 12:08 shared
[2025-06-04 13:57:01] -rw-r--r--. 2 boincer umatlas    508874 Jun  4 12:08 input.tar.gz
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas         0 Jun  4 12:08 boinc_lockfile
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas      2519 Jun  4 12:08 pandaJob.out
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas    990989 Jun  4 12:08 agis_schedconf.cvmfs.json
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas   1598969 Jun  4 12:08 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:57:01] drwx------. 4 boincer umatlas      4096 Jun  4 12:08 pilot3
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas      6658 Jun  4 13:55 init_data.xml
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas 183123995 Jun  4 13:56 HITS.45006595._000457.pool.root.1
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas        95 Jun  4 13:56 pilot_heartbeat.json
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas       530 Jun  4 13:56 boinc_task_state.xml
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas      1038 Jun  4 13:56 memory_monitor_summary.json
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas    343765 Jun  4 13:56 log.45006595._000457.job.log.tgz.1
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas        27 Jun  4 13:56 wrapper_checkpoint.txt
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 13:56 boinc_mmap_file
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas      7701 Jun  4 13:56 heartbeat.json
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas      4749 Jun  4 13:57 pilotlog.txt
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas    601187 Jun  4 13:57 log.45006595._000457.job.log.1
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas       357 Jun  4 13:57 output.list
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas       620 Jun  4 13:57 runtime_log
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas    962560 Jun  4 13:57 result.tar.gz
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas      8646 Jun  4 13:57 runtime_log.err
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas       650 Jun  4 13:57 qtOKDmoaMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmCWVKDm6EVMOo.diag
[2025-06-04 13:57:01] -rw-r--r--. 1 boincer umatlas     20978 Jun  4 13:57 stderr.txt
[2025-06-04 13:57:01] HITS file was successfully produced:
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas 183123995 Jun  4 13:56 shared/HITS.pool.root.1
[2025-06-04 13:57:01]  *** Contents of shared directory: ***
[2025-06-04 13:57:01] total 390148
[2025-06-04 13:57:01] -rw-r--r--. 2 boincer umatlas 214886623 Jun  4 12:08 ATLAS.root_0
[2025-06-04 13:57:01] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 12:08 start_atlas.sh
[2025-06-04 13:57:01] -rw-r--r--. 2 boincer umatlas    508874 Jun  4 12:08 input.tar.gz
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas 183123995 Jun  4 13:56 HITS.pool.root.1
[2025-06-04 13:57:01] -rw-------. 1 boincer umatlas    962560 Jun  4 13:57 result.tar.gz
13:57:02 (4034973): run_atlas exited; CPU time 43436.265883
13:57:02 (4034973): called boinc_finish(0)

</stderr_txt>
]]>

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