Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:54:50 (2913727): wrapper (7.7.26015): starting
11:54:50 (2913727): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:54:50] Arguments: --nthreads 8
[2025-06-04 11:54:50] Threads: 8
[2025-06-04 11:54:50] Checking for CVMFS
[2025-06-04 11:54:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:54:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:54:50] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:54:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:54:50] 2.12.6.0 9255 31707 594016 146786 2 321 30147950 32947200 9902 16776704 1 170080054 99.664 144649065 26934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 11:54:50] CVMFS is ok
[2025-06-04 11:54:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:54:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:54:50] Further information can be found at the LHC@home message board.
[2025-06-04 11:54:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:54:50] Checking for apptainer binary...
[2025-06-04 11:54:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:54:50] Running /usr/bin/apptainer --version
[2025-06-04 11:54:50] apptainer version 1.4.1-1.el9
[2025-06-04 11:54:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:54:50] c6-6-8-1.aglt2.org
[2025-06-04 11:54:50] apptainer works
[2025-06-04 11:54:50] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:54:50] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:54:50] Starting ATLAS job with PandaID=6668191730
[2025-06-04 11:54:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:19:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:19:35]  guid=87de3122-386e-4ac9-a576-c7d0a3b1ae68
[2025-06-04 13:19:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 13:19:35]  is_altstaged=None
[2025-06-04 13:19:35]  is_tar=False
[2025-06-04 13:19:35]  lfn=log.44871837._079996.job.log.tgz.1
[2025-06-04 13:19:35]  mtime=0
[2025-06-04 13:19:35]  protocol_id=None
[2025-06-04 13:19:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 13:19:35]  replicas=None
[2025-06-04 13:19:35]  scope=mc23_13p6TeV
[2025-06-04 13:19:35]  status=None
[2025-06-04 13:19:35]  status_code=0
[2025-06-04 13:19:35]  storage_token=
[2025-06-04 13:19:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668191730/log.44871837._079996.job.log.tgz.1
[2025-06-04 13:19:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/16/log.44871837._079996.job.log.tgz.1
[2025-06-04 13:19:35]  workdir=None
[2025-06-04 13:19:35] ]
[2025-06-04 13:19:35] 2025-06-04 17:19:07,311 | INFO     | monitor loop #372: job 0:6668191730 is in state 'stageout'
[2025-06-04 13:19:35] 2025-06-04 17:19:07,311 | WARNING  | aborting job monitor tasks since payload process 2926531 is not running
[2025-06-04 13:19:35] 2025-06-04 17:19:07,311 | INFO     | transferring file log.44871837._079996.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668191730/log.44871837._079996.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 13:19:35] 2025-06-04 17:19:07,311 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668191730/log.44871837._079996.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._079996.job
[2025-06-04 13:19:35] 2025-06-04 17:19:07,329 | INFO     | adding to output.list: log.44871837._079996.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/16/log.44871837._079996.job.log.tg
[2025-06-04 13:19:35] 2025-06-04 17:19:07,329 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 13:19:35] 2025-06-04 17:19:07,330 | INFO     | summary of transferred files:
[2025-06-04 13:19:35] 2025-06-04 17:19:07,330 | INFO     |  -- lfn=log.44871837._079996.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 13:19:35] 2025-06-04 17:19:07,330 | INFO     | stage-out finished correctly
[2025-06-04 13:19:35] 2025-06-04 17:19:07,805 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 13:19:35] 2025-06-04 17:19:09,813 | INFO     | monitor loop #373: job 0:6668191730 is in state 'finished'
[2025-06-04 13:19:35] 2025-06-04 17:19:09,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:19:35] 2025-06-04 17:19:10,799 | INFO     | job 6668191730 has state=finished
[2025-06-04 13:19:35] 2025-06-04 17:19:10,800 | INFO     | preparing for final server update for job 6668191730 in state='finished'
[2025-06-04 13:19:35] 2025-06-04 17:19:10,800 | INFO     | this job has now completed (state=finished)
[2025-06-04 13:19:35] 2025-06-04 17:19:10,800 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 13:19:35] 2025-06-04 17:19:10,800 | INFO     | log transfer has been attempted: DONE
[2025-06-04 13:19:35] 2025-06-04 17:19:10,800 | INFO     | job 6668191730 has finished - writing final server update
[2025-06-04 13:19:35] 2025-06-04 17:19:10,801 | INFO     | total number of processed events: 400 (read)
[2025-06-04 13:19:35] 2025-06-04 17:19:10,819 | INFO     | executing command: lscpu
[2025-06-04 13:19:35] 2025-06-04 17:19:10,893 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 13:19:35] 2025-06-04 17:19:12,316 | INFO     | monitor loop #374: job 0:6668191730 is in state 'finished'
[2025-06-04 13:19:35] 2025-06-04 17:19:12,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:19:35] 2025-06-04 17:19:14,435 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 13:19:35] 2025-06-04 17:19:14,436 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668191730/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:19:35] 2025-06-04 17:19:14,437 | INFO     | extracted standard info from prmon json
[2025-06-04 13:19:35] 2025-06-04 17:19:14,437 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:19:35] 2025-06-04 17:19:14,437 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:19:35] 2025-06-04 17:19:14,437 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:19:35] 2025-06-04 17:19:14,438 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:19:35] 2025-06-04 17:19:14,440 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:19:35] 2025-06-04 17:19:14,440 | INFO     | sum of square deviations: 136095575.0
[2025-06-04 13:19:35] 2025-06-04 17:19:14,440 | INFO     | sum of deviations: -3181452559.9999995
[2025-06-04 13:19:35] 2025-06-04 17:19:14,440 | INFO     | mean x: 1749055111.5
[2025-06-04 13:19:35] 2025-06-04 17:19:14,441 | INFO     | mean y: 2245162.1315789474
[2025-06-04 13:19:35] 2025-06-04 17:19:14,441 | INFO     | -- intersect: 40889216410.55578
[2025-06-04 13:19:35] 2025-06-04 17:19:14,441 | INFO     | intersect: 40889216410.55578
[2025-06-04 13:19:35] 2025-06-04 17:19:14,441 | INFO     | chi2: 0.05988660127771713
[2025-06-04 13:19:35] 2025-06-04 17:19:14,441 | INFO     | -- intersect: 40889216410.55578
[2025-06-04 13:19:35] 2025-06-04 17:19:14,441 | INFO     | current memory leak: -23.38 B/s (using 76 data points, chi2=0.06)
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | ..............................
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . Timing measurements:
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . get job = 0 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . initial setup = 2 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . payload setup = 4 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . stage-in = 0 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . payload execution = 5027 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . stage-out = 0 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | . log creation = 0 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,442 | INFO     | ..............................
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | 
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | job summary report
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | --------------------------------------------------
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | PanDA job id: 6668191730
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | task id: 44871837
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | errors: (none)
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | pilot state: finished 
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | transexitcode: 0
[2025-06-04 13:19:35] 2025-06-04 17:19:14,541 | INFO     | exeerrorcode: 0
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | exeerrordiag: 
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | exitcode: 0
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | exitmsg: OK
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | cpuconsumptiontime: 37199 s
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | nevents: 400
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | neventsw: 0
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | pid: 2926531
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | pgrp: 2926531
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | corecount: 8
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | event service: False
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | sizes: {0: 2397198, 1: 2397369, 3: 2397575, 11: 2397603, 5034: 2423866, 5036: 2432991, 5043: 2433105}
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | --------------------------------------------------
[2025-06-04 13:19:35] 2025-06-04 17:19:14,542 | INFO     | 
[2025-06-04 13:19:35] 2025-06-04 17:19:14,543 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 13:19:35] 2025-06-04 17:19:14,561 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,562 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | job 6668191730 has completed (purged errors)
[2025-06-04 13:19:35] 2025-06-04 17:19:14,563 | INFO     | overall cleanup function is called
[2025-06-04 13:19:35] 2025-06-04 17:19:15,571 | INFO     | --- collectZombieJob: --- 10, [2926531]
[2025-06-04 13:19:35] 2025-06-04 17:19:15,571 | INFO     | zombie collector waiting for pid 2926531
[2025-06-04 13:19:35] 2025-06-04 17:19:15,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:19:35] 2025-06-04 17:19:15,571 | INFO     | collected zombie processes
[2025-06-04 13:19:35] 2025-06-04 17:19:15,571 | INFO     | will attempt to kill all subprocesses of pid=2926531
[2025-06-04 13:19:35] 2025-06-04 17:19:15,896 | INFO     | process IDs to be killed: [2926531] (in reverse order)
[2025-06-04 13:19:35] 2025-06-04 17:19:15,986 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:19:35] 2025-06-04 17:19:15,986 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:19:35] 2025-06-04 17:19:15,998 | INFO     | did not find any defunct processes belonging to 2926531
[2025-06-04 13:19:35] 2025-06-04 17:19:16,011 | INFO     | did not find any defunct processes belonging to 2926531
[2025-06-04 13:19:35] 2025-06-04 17:19:16,012 | INFO     | ready for new job
[2025-06-04 13:19:35] 2025-06-04 17:19:16,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:19:35] 2025-06-04 17:19:16,014 | INFO     | **************************************
[2025-06-04 13:19:35] 2025-06-04 17:19:16,014 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:19:35] 2025-06-04 17:19:16,015 | INFO     | **************************************
[2025-06-04 13:19:35] 2025-06-04 17:19:16,015 | INFO     | 
[2025-06-04 13:19:35] 2025-06-04 17:19:16,033 | INFO     | architecture information:
[2025-06-04 13:19:35] 2025-06-04 17:19:16,033 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:19:35] 2025-06-04 17:19:16,050 | INFO     | cat /etc/os-release:
[2025-06-04 13:19:35] NAME="CentOS Linux"
[2025-06-04 13:19:35] VERSION="7 (Core)"
[2025-06-04 13:19:35] ID="centos"
[2025-06-04 13:19:35] ID_LIKE="rhel fedora"
[2025-06-04 13:19:35] VERSION_ID="7"
[2025-06-04 13:19:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:19:35] ANSI_COLOR="0;31"
[2025-06-04 13:19:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:19:35] HOME_URL="https://www.centos.org/"
[2025-06-04 13:19:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:19:35] 
[2025-06-04 13:19:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:19:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:19:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:19:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:19:35] 
[2025-06-04 13:19:35] 2025-06-04 17:19:16,051 | INFO     | **************************************
[2025-06-04 13:19:35] 2025-06-04 17:19:16,554 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 13:19:35] 2025-06-04 17:19:16,572 | INFO     | sufficient remaining disk space (76061605888 B)
[2025-06-04 13:19:35] 2025-06-04 17:19:16,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:19:35] 2025-06-04 17:19:16,573 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:19:35] 2025-06-04 17:19:16,573 | INFO     | update_server=False
[2025-06-04 13:19:35] 2025-06-04 17:19:16,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:19:35] 2025-06-04 17:19:16,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:19:35] 2025-06-04 17:19:16,573 | INFO     | aborting loop
[2025-06-04 13:19:35] 2025-06-04 17:19:16,578 | INFO     | all payload control threads have been joined
[2025-06-04 13:19:35] 2025-06-04 17:19:16,798 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:19:35] 2025-06-04 17:19:16,799 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:19:35] 2025-06-04 17:19:16,799 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:19:35] 2025-06-04 17:19:17,568 | INFO     | all data control threads have been joined
[2025-06-04 13:19:35] 2025-06-04 17:19:17,578 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:17,579 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:17,584 | INFO     | [payload] control thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:17,737 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:17,750 | INFO     | [job] validate thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:17,798 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:17,865 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:17,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:19:35] 2025-06-04 17:19:18,033 | INFO     | all job control threads have been joined
[2025-06-04 13:19:35] 2025-06-04 17:19:18,062 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:18,410 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:19:35] 2025-06-04 17:19:18,574 | INFO     | [data] control thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:18,593 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:19,018 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:19,038 | INFO     | [job] control thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:19,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:19:35] 2025-06-04 17:19:19,946 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:20,556 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:22,416 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:27,502 | INFO     | job.realtimelogging is not enabled
[2025-06-04 13:19:35] 2025-06-04 17:19:28,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:19:35] 2025-06-04 17:19:30,008 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181459826496)>', '<ExcThread(monitor, started 140180618999552)>']
[2025-06-04 13:19:35] 2025-06-04 17:19:30,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:19:35] 2025-06-04 17:19:30,869 | INFO     | [monitor] control thread has ended
[2025-06-04 13:19:35] 2025-06-04 17:19:35,034 | INFO     | all workflow threads have been joined
[2025-06-04 13:19:35] 2025-06-04 17:19:35,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:19:35] 2025-06-04 17:19:35,034 | INFO     | traces error code: 0
[2025-06-04 13:19:35] 2025-06-04 17:19:35,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:19:35] 2025-06-04 17:19:35,198 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:19:35] 2025-06-04 17:19:35,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:19:35] 2025-06-04 17:19:35,203 [wrapper] pilotpid: 2917813
[2025-06-04 13:19:35] 2025-06-04 17:19:35,205 [wrapper] Pilot exit status: 0
[2025-06-04 13:19:35] 2025-06-04 17:19:35,214 [wrapper] pandaids: 6668191730
[2025-06-04 13:19:35] 2025-06-04 17:19:35,272 [wrapper] cleanup supervisor_pilot 3231485 2917814
[2025-06-04 13:19:35] 2025-06-04 17:19:35,275 [wrapper] Test setup, not cleaning
[2025-06-04 13:19:35] 2025-06-04 17:19:35,277 [wrapper] apfmon messages muted
[2025-06-04 13:19:35] 2025-06-04 17:19:35,280 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:19:35] 2025-06-04 17:19:35,282 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:19:35]  *** Error codes and diagnostics ***
[2025-06-04 13:19:35]     "exeErrorCode": 0,
[2025-06-04 13:19:35]     "exeErrorDiag": "",
[2025-06-04 13:19:35]     "pilotErrorCode": 0,
[2025-06-04 13:19:35]     "pilotErrorDiag": "",
[2025-06-04 13:19:35]  *** Listing of results directory ***
[2025-06-04 13:19:35] total 410236
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas    495897 May 28 01:33 pilot3.tar.gz
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas      5111 May 28 02:10 queuedata.json
[2025-06-04 13:19:35] -rwx------ 1 boincer umatlas     37140 May 28 02:12 runpilot2-wrapper.sh
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas       100 Jun  4 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:19:35] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 11:54 run_atlas
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas       105 Jun  4 11:54 job.xml
[2025-06-04 13:19:35] -rw-r--r-- 2 boincer umatlas 224238747 Jun  4 11:54 EVNT.44871834._003124.pool.root.1
[2025-06-04 13:19:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 11:54 start_atlas.sh
[2025-06-04 13:19:35] drwxrwx--x 2 boincer umatlas      4096 Jun  4 11:54 shared
[2025-06-04 13:19:35] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 11:54 input.tar.gz
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas         0 Jun  4 11:54 boinc_lockfile
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas      2558 Jun  4 11:54 pandaJob.out
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas    990989 Jun  4 11:54 agis_schedconf.cvmfs.json
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas   1598969 Jun  4 11:54 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:19:35] drwx------ 4 boincer umatlas      4096 Jun  4 11:54 pilot3
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas 190430028 Jun  4 13:18 HITS.44871837._079996.pool.root.1
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas      6856 Jun  4 13:18 init_data.xml
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas       529 Jun  4 13:18 boinc_task_state.xml
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas        95 Jun  4 13:18 pilot_heartbeat.json
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas      1041 Jun  4 13:19 memory_monitor_summary.json
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas    299791 Jun  4 13:19 log.44871837._079996.job.log.tgz.1
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas      7720 Jun  4 13:19 heartbeat.json
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 13:19 boinc_mmap_file
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas        27 Jun  4 13:19 wrapper_checkpoint.txt
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas      4425 Jun  4 13:19 pilotlog.txt
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas    489065 Jun  4 13:19 log.44871837._079996.job.log.1
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas       357 Jun  4 13:19 output.list
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas       620 Jun  4 13:19 runtime_log
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas    808960 Jun  4 13:19 result.tar.gz
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas       652 Jun  4 13:19 saxNDm9CPe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlSbKDmlrwrkm.diag
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 13:19 runtime_log.err
[2025-06-04 13:19:35] -rw-r--r-- 1 boincer umatlas     21274 Jun  4 13:19 stderr.txt
[2025-06-04 13:19:35] HITS file was successfully produced:
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas 190430028 Jun  4 13:18 shared/HITS.pool.root.1
[2025-06-04 13:19:35]  *** Contents of shared directory: ***
[2025-06-04 13:19:35] total 406264
[2025-06-04 13:19:35] -rw-r--r-- 2 boincer umatlas 224238747 Jun  4 11:54 ATLAS.root_0
[2025-06-04 13:19:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 11:54 start_atlas.sh
[2025-06-04 13:19:35] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 11:54 input.tar.gz
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas 190430028 Jun  4 13:18 HITS.pool.root.1
[2025-06-04 13:19:35] -rw------- 1 boincer umatlas    808960 Jun  4 13:19 result.tar.gz
13:19:37 (2913727): run_atlas exited; CPU time 37388.098039
13:19:37 (2913727): called boinc_finish(0)

</stderr_txt>
]]>

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