Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:43:15 (93182): wrapper (7.7.26015): starting
11:43:15 (93182): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:43:15] Arguments: --nthreads 8
[2025-06-04 11:43:15] Threads: 8
[2025-06-04 11:43:15] Checking for CVMFS
[2025-06-04 11:43:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:43:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:43:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:43:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:43:16] 2.11.2.0 7082 28978 202628 146786 1 193 9269095 18432001 7156 130560 0 121778467 99.596 100234477 30872 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 11:43:16] CVMFS is ok
[2025-06-04 11:43:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:43:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:43:16] Further information can be found at the LHC@home message board.
[2025-06-04 11:43:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:43:16] Checking for apptainer binary...
[2025-06-04 11:43:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:43:16] Running /usr/bin/apptainer --version
[2025-06-04 11:43:16] apptainer version 1.3.2-1.el7
[2025-06-04 11:43:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:43:16] c-211-35-3.aglt2.org
[2025-06-04 11:43:16] apptainer works
[2025-06-04 11:43:16] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:43:16] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:43:16] Starting ATLAS job with PandaID=6667033586
[2025-06-04 11:43:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:12:42]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:12:42]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 13:12:42]  is_altstaged=None
[2025-06-04 13:12:42]  is_tar=False
[2025-06-04 13:12:42]  lfn=log.44871837._067775.job.log.tgz.1
[2025-06-04 13:12:42]  mtime=0
[2025-06-04 13:12:42]  protocol_id=None
[2025-06-04 13:12:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 13:12:42]  replicas=None
[2025-06-04 13:12:42]  scope=mc23_13p6TeV
[2025-06-04 13:12:42]  status=None
[2025-06-04 13:12:42]  status_code=0
[2025-06-04 13:12:42]  storage_token=
[2025-06-04 13:12:42]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6667033586/log.44871837._067775.job.log.tgz.1
[2025-06-04 13:12:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/94/log.44871837._067775.job.log.tgz.1
[2025-06-04 13:12:42]  workdir=None
[2025-06-04 13:12:42] ]
[2025-06-04 13:12:42] 2025-06-04 17:12:21,057 | INFO     | transferring file log.44871837._067775.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6667033586/log.44871837._067775.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 13:12:42] 2025-06-04 17:12:21,057 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6667033586/log.44871837._067775.job.log.tgz.1 /tmp/boinchome/slots/4/log.44871837._067775.job
[2025-06-04 13:12:42] 2025-06-04 17:12:21,084 | INFO     | adding to output.list: log.44871837._067775.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/94/log.44871837._067775.job.log.tg
[2025-06-04 13:12:42] 2025-06-04 17:12:21,085 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 13:12:42] 2025-06-04 17:12:21,085 | INFO     | summary of transferred files:
[2025-06-04 13:12:42] 2025-06-04 17:12:21,085 | INFO     |  -- lfn=log.44871837._067775.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 13:12:42] 2025-06-04 17:12:21,085 | INFO     | stage-out finished correctly
[2025-06-04 13:12:42] 2025-06-04 17:12:21,328 | INFO     | monitor loop #401: job 0:6667033586 is in state 'finished'
[2025-06-04 13:12:42] 2025-06-04 17:12:21,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:12:42] 2025-06-04 17:12:22,154 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 13:12:42] 2025-06-04 17:12:23,832 | INFO     | monitor loop #402: job 0:6667033586 is in state 'finished'
[2025-06-04 13:12:42] 2025-06-04 17:12:23,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:12:42] 2025-06-04 17:12:25,194 | INFO     | job 6667033586 has state=finished
[2025-06-04 13:12:42] 2025-06-04 17:12:25,195 | INFO     | preparing for final server update for job 6667033586 in state='finished'
[2025-06-04 13:12:42] 2025-06-04 17:12:25,196 | INFO     | this job has now completed (state=finished)
[2025-06-04 13:12:42] 2025-06-04 17:12:25,196 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 13:12:42] 2025-06-04 17:12:25,196 | INFO     | log transfer has been attempted: DONE
[2025-06-04 13:12:42] 2025-06-04 17:12:25,196 | INFO     | job 6667033586 has finished - writing final server update
[2025-06-04 13:12:42] 2025-06-04 17:12:25,197 | INFO     | total number of processed events: 400 (read)
[2025-06-04 13:12:42] 2025-06-04 17:12:25,205 | INFO     | executing command: lscpu
[2025-06-04 13:12:42] 2025-06-04 17:12:25,289 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 13:12:42] 2025-06-04 17:12:25,314 | INFO     | PID=106057 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 13:12:42] 2025-06-04 17:12:25,314 | INFO     | .. there are 13 such processes running
[2025-06-04 13:12:42] 2025-06-04 17:12:26,335 | INFO     | monitor loop #403: job 0:6667033586 is in state 'finished'
[2025-06-04 13:12:42] 2025-06-04 17:12:26,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 13:12:42] 2025-06-04 17:12:28,419 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 13:12:42] 2025-06-04 17:12:28,420 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6667033586/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:12:42] 2025-06-04 17:12:28,421 | INFO     | extracted standard info from prmon json
[2025-06-04 13:12:42] 2025-06-04 17:12:28,421 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:12:42] 2025-06-04 17:12:28,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:12:42] 2025-06-04 17:12:28,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:12:42] 2025-06-04 17:12:28,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:12:42] 2025-06-04 17:12:28,425 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:12:42] 2025-06-04 17:12:28,425 | INFO     | sum of square deviations: 164765880.0
[2025-06-04 13:12:42] 2025-06-04 17:12:28,426 | INFO     | sum of deviations: -265490055.99999988
[2025-06-04 13:12:42] 2025-06-04 17:12:28,426 | INFO     | mean x: 1749054570.0
[2025-06-04 13:12:42] 2025-06-04 17:12:28,426 | INFO     | mean y: 2495082.8518518517
[2025-06-04 13:12:42] 2025-06-04 17:12:28,426 | INFO     | -- intersect: 2820776366.1876717
[2025-06-04 13:12:42] 2025-06-04 17:12:28,427 | INFO     | intersect: 2820776366.1876717
[2025-06-04 13:12:42] 2025-06-04 17:12:28,427 | INFO     | chi2: 0.00339185144862399
[2025-06-04 13:12:42] 2025-06-04 17:12:28,427 | INFO     | -- intersect: 2820776366.1876717
[2025-06-04 13:12:42] 2025-06-04 17:12:28,427 | INFO     | current memory leak: -1.61 B/s (using 81 data points, chi2=0.00)
[2025-06-04 13:12:42] 2025-06-04 17:12:28,428 | INFO     | ..............................
[2025-06-04 13:12:42] 2025-06-04 17:12:28,428 | INFO     | . Timing measurements:
[2025-06-04 13:12:42] 2025-06-04 17:12:28,428 | INFO     | . get job = 0 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,428 | INFO     | . initial setup = 2 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,428 | INFO     | . payload setup = 4 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,428 | INFO     | . stage-in = 0 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,429 | INFO     | . payload execution = 5313 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,429 | INFO     | . stage-out = 0 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,429 | INFO     | . log creation = 0 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,429 | INFO     | ..............................
[2025-06-04 13:12:42] 2025-06-04 17:12:28,523 | INFO     | 
[2025-06-04 13:12:42] 2025-06-04 17:12:28,523 | INFO     | job summary report
[2025-06-04 13:12:42] 2025-06-04 17:12:28,523 | INFO     | --------------------------------------------------
[2025-06-04 13:12:42] 2025-06-04 17:12:28,523 | INFO     | PanDA job id: 6667033586
[2025-06-04 13:12:42] 2025-06-04 17:12:28,523 | INFO     | task id: 44871837
[2025-06-04 13:12:42] 2025-06-04 17:12:28,523 | INFO     | errors: (none)
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | pilot state: finished 
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | transexitcode: 0
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | exeerrorcode: 0
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | exeerrordiag: 
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | exitcode: 0
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | exitmsg: OK
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | cpuconsumptiontime: 40009 s
[2025-06-04 13:12:42] 2025-06-04 17:12:28,524 | INFO     | nevents: 400
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | neventsw: 0
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | pid: 132669
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | pgrp: 132669
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | corecount: 8
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | event service: False
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | sizes: {0: 2397386, 3: 2397592, 11: 2397620, 5321: 2424089, 5323: 2433030, 5325: 2433086, 5331: 2433384}
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | --------------------------------------------------
[2025-06-04 13:12:42] 2025-06-04 17:12:28,525 | INFO     | 
[2025-06-04 13:12:42] 2025-06-04 17:12:28,526 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-06-04 13:12:42] 2025-06-04 17:12:28,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,551 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:12:42] 2025-06-04 17:12:28,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:12:42] 2025-06-04 17:12:28,553 | INFO     | job 6667033586 has completed (purged errors)
[2025-06-04 13:12:42] 2025-06-04 17:12:28,553 | INFO     | overall cleanup function is called
[2025-06-04 13:12:42] 2025-06-04 17:12:29,561 | INFO     | --- collectZombieJob: --- 10, [132669]
[2025-06-04 13:12:42] 2025-06-04 17:12:29,562 | INFO     | zombie collector waiting for pid 132669
[2025-06-04 13:12:42] 2025-06-04 17:12:29,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:12:42] 2025-06-04 17:12:29,562 | INFO     | collected zombie processes
[2025-06-04 13:12:42] 2025-06-04 17:12:29,562 | INFO     | will attempt to kill all subprocesses of pid=132669
[2025-06-04 13:12:42] 2025-06-04 17:12:29,771 | INFO     | process IDs to be killed: [132669] (in reverse order)
[2025-06-04 13:12:42] 2025-06-04 17:12:29,868 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:12:42] 2025-06-04 17:12:29,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:12:42] 2025-06-04 17:12:29,880 | INFO     | did not find any defunct processes belonging to 132669
[2025-06-04 13:12:42] 2025-06-04 17:12:29,889 | INFO     | did not find any defunct processes belonging to 132669
[2025-06-04 13:12:42] 2025-06-04 17:12:29,890 | INFO     | ready for new job
[2025-06-04 13:12:42] 2025-06-04 17:12:29,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:12:42] 2025-06-04 17:12:29,891 | INFO     | **************************************
[2025-06-04 13:12:42] 2025-06-04 17:12:29,891 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:12:42] 2025-06-04 17:12:29,892 | INFO     | **************************************
[2025-06-04 13:12:42] 2025-06-04 17:12:29,892 | INFO     | 
[2025-06-04 13:12:42] 2025-06-04 17:12:29,898 | INFO     | architecture information:
[2025-06-04 13:12:42] 2025-06-04 17:12:29,898 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:12:42] 2025-06-04 17:12:29,914 | INFO     | cat /etc/os-release:
[2025-06-04 13:12:42] NAME="CentOS Linux"
[2025-06-04 13:12:42] VERSION="7 (Core)"
[2025-06-04 13:12:42] ID="centos"
[2025-06-04 13:12:42] ID_LIKE="rhel fedora"
[2025-06-04 13:12:42] VERSION_ID="7"
[2025-06-04 13:12:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:12:42] ANSI_COLOR="0;31"
[2025-06-04 13:12:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:12:42] HOME_URL="https://www.centos.org/"
[2025-06-04 13:12:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:12:42] 
[2025-06-04 13:12:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:12:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:12:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:12:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:12:42] 
[2025-06-04 13:12:42] 2025-06-04 17:12:29,914 | INFO     | **************************************
[2025-06-04 13:12:42] 2025-06-04 17:12:30,417 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-06-04 13:12:42] 2025-06-04 17:12:30,439 | INFO     | sufficient remaining disk space (106143154176 B)
[2025-06-04 13:12:42] 2025-06-04 17:12:30,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:12:42] 2025-06-04 17:12:30,439 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:12:42] 2025-06-04 17:12:30,439 | INFO     | update_server=False
[2025-06-04 13:12:42] 2025-06-04 17:12:30,440 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:12:42] 2025-06-04 17:12:30,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:12:42] 2025-06-04 17:12:30,440 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:12:42] 2025-06-04 17:12:30,441 | INFO     | aborting loop
[2025-06-04 13:12:42] 2025-06-04 17:12:30,444 | INFO     | all data control threads have been joined
[2025-06-04 13:12:42] 2025-06-04 17:12:30,665 | INFO     | all payload control threads have been joined
[2025-06-04 13:12:42] 2025-06-04 17:12:31,329 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:12:42] 2025-06-04 17:12:31,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:12:42] 2025-06-04 17:12:31,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:12:42] 2025-06-04 17:12:31,443 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:31,445 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:31,446 | INFO     | [data] control thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:31,446 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:31,538 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:31,654 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:12:42] 2025-06-04 17:12:31,672 | INFO     | [payload] control thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:31,746 | INFO     | all job control threads have been joined
[2025-06-04 13:12:42] 2025-06-04 17:12:32,134 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:32,141 | INFO     | [job] validate thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:32,174 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:32,254 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:32,517 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:32,520 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:32,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:12:42] 2025-06-04 17:12:32,752 | INFO     | [job] control thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:32,876 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:33,665 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:36,756 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:12:42] 2025-06-04 17:12:36,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140027057219392)>', '<ExcThread(monitor, started 140026402830080)>']
[2025-06-04 13:12:42] 2025-06-04 17:12:37,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:12:42] 2025-06-04 17:12:37,360 | INFO     | [monitor] control thread has ended
[2025-06-04 13:12:42] 2025-06-04 17:12:41,807 | INFO     | all workflow threads have been joined
[2025-06-04 13:12:42] 2025-06-04 17:12:41,808 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:12:42] 2025-06-04 17:12:41,808 | INFO     | traces error code: 0
[2025-06-04 13:12:42] 2025-06-04 17:12:41,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:12:42] 2025-06-04 17:12:41,925 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:12:42] 2025-06-04 17:12:41,928 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:12:42] 2025-06-04 17:12:41,931 [wrapper] pilotpid: 106057
[2025-06-04 13:12:42] 2025-06-04 17:12:41,934 [wrapper] Pilot exit status: 0
[2025-06-04 13:12:42] 2025-06-04 17:12:41,944 [wrapper] pandaids: 6667033586
[2025-06-04 13:12:42] 2025-06-04 17:12:41,984 [wrapper] cleanup supervisor_pilot 279199 106059
[2025-06-04 13:12:42] 2025-06-04 17:12:41,987 [wrapper] Test setup, not cleaning
[2025-06-04 13:12:42] 2025-06-04 17:12:41,990 [wrapper] apfmon messages muted
[2025-06-04 13:12:42] 2025-06-04 17:12:41,992 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:12:42] 2025-06-04 17:12:41,995 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:12:42]  *** Error codes and diagnostics ***
[2025-06-04 13:12:42]     "exeErrorCode": 0,
[2025-06-04 13:12:42]     "exeErrorDiag": "",
[2025-06-04 13:12:42]     "pilotErrorCode": 0,
[2025-06-04 13:12:42]     "pilotErrorDiag": "",
[2025-06-04 13:12:42]  *** Listing of results directory ***
[2025-06-04 13:12:42] total 418132
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas    495897 May 27 08:18 pilot3.tar.gz
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas      5111 May 27 09:03 queuedata.json
[2025-06-04 13:12:42] -rwx------ 1 boincer umatlas     37140 May 27 09:04 runpilot2-wrapper.sh
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas       100 Jun  4 11:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:12:42] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 11:43 run_atlas
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas       105 Jun  4 11:43 job.xml
[2025-06-04 13:12:42] -rw-r--r-- 2 boincer umatlas 227322494 Jun  4 11:43 EVNT.44871834._002667.pool.root.1
[2025-06-04 13:12:42] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 11:43 start_atlas.sh
[2025-06-04 13:12:42] drwxrwx--x 2 boincer umatlas      4096 Jun  4 11:43 shared
[2025-06-04 13:12:42] -rw-r--r-- 2 boincer umatlas    508885 Jun  4 11:43 input.tar.gz
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas         0 Jun  4 11:43 boinc_lockfile
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas      2556 Jun  4 11:43 pandaJob.out
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas    990989 Jun  4 11:43 agis_schedconf.cvmfs.json
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas   1598969 Jun  4 11:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:12:42] drwx------ 4 boincer umatlas      4096 Jun  4 11:43 pilot3
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas      6299 Jun  4 13:09 init_data.xml
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas        95 Jun  4 13:11 pilot_heartbeat.json
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas 195385347 Jun  4 13:11 HITS.44871837._067775.pool.root.1
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas       529 Jun  4 13:11 boinc_task_state.xml
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas      1049 Jun  4 13:12 memory_monitor_summary.json
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas    294566 Jun  4 13:12 log.44871837._067775.job.log.tgz.1
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas      7736 Jun  4 13:12 heartbeat.json
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas        27 Jun  4 13:12 wrapper_checkpoint.txt
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 13:12 boinc_mmap_file
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas      4354 Jun  4 13:12 pilotlog.txt
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas    518327 Jun  4 13:12 log.44871837._067775.job.log.1
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas       357 Jun  4 13:12 output.list
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas       620 Jun  4 13:12 runtime_log
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas    829440 Jun  4 13:12 result.tar.gz
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas       658 Jun  4 13:12 x5jNDm298d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLUZKDmIgIL2n.diag
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 13:12 runtime_log.err
[2025-06-04 13:12:42] -rw-r--r-- 1 boincer umatlas     21434 Jun  4 13:12 stderr.txt
[2025-06-04 13:12:42] HITS file was successfully produced:
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas 195385347 Jun  4 13:11 shared/HITS.pool.root.1
[2025-06-04 13:12:42]  *** Contents of shared directory: ***
[2025-06-04 13:12:42] total 414140
[2025-06-04 13:12:42] -rw-r--r-- 2 boincer umatlas 227322494 Jun  4 11:43 ATLAS.root_0
[2025-06-04 13:12:42] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 11:43 start_atlas.sh
[2025-06-04 13:12:42] -rw-r--r-- 2 boincer umatlas    508885 Jun  4 11:43 input.tar.gz
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas 195385347 Jun  4 13:11 HITS.pool.root.1
[2025-06-04 13:12:42] -rw------- 1 boincer umatlas    829440 Jun  4 13:12 result.tar.gz
13:12:44 (93182): run_atlas exited; CPU time 40137.387681
13:12:44 (93182): called boinc_finish(0)

</stderr_txt>
]]>

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