Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:21:38 (3678584): wrapper (7.7.26015): starting
11:21:38 (3678584): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:21:38] Arguments: --nthreads 8
[2025-06-04 11:21:38] Threads: 8
[2025-06-04 11:21:38] Checking for CVMFS
[2025-06-04 11:21:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:21:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:21:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:21:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:21:39] 2.12.6.0 54733 37350 531468 146786 0 466 22937012 32935937 31236 16776704 1 498529304 99.712 353799195 21629 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 11:21:39] CVMFS is ok
[2025-06-04 11:21:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:21:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:21:39] Further information can be found at the LHC@home message board.
[2025-06-04 11:21:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:21:39] Checking for apptainer binary...
[2025-06-04 11:21:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:21:39] Running /usr/bin/apptainer --version
[2025-06-04 11:21:39] apptainer version 1.4.1-1.el9
[2025-06-04 11:21:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:21:39] c7-2-10.aglt2.org
[2025-06-04 11:21:39] apptainer works
[2025-06-04 11:21:39] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:21:39] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:21:39] Starting ATLAS job with PandaID=6679668415
[2025-06-04 11:21:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:15:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:15:11]  is_tar=False
[2025-06-04 12:15:11]  lfn=log.45006595._056606.job.log.tgz.1
[2025-06-04 12:15:11]  mtime=0
[2025-06-04 12:15:11]  protocol_id=None
[2025-06-04 12:15:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 12:15:11]  replicas=None
[2025-06-04 12:15:11]  scope=mc23_13p6TeV
[2025-06-04 12:15:11]  status=None
[2025-06-04 12:15:11]  status_code=0
[2025-06-04 12:15:11]  storage_token=
[2025-06-04 12:15:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679668415/log.45006595._056606.job.log.tgz.1
[2025-06-04 12:15:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/8f/log.45006595._056606.job.log.tgz.1
[2025-06-04 12:15:11]  workdir=None
[2025-06-04 12:15:11] ]
[2025-06-04 12:15:11] 2025-06-04 16:14:43,529 | INFO     | transferring file log.45006595._056606.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679668415/log.45006595._056606.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 12:15:11] 2025-06-04 16:14:43,530 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679668415/log.45006595._056606.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._056606.job
[2025-06-04 12:15:11] 2025-06-04 16:14:43,550 | INFO     | adding to output.list: log.45006595._056606.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/8f/log.45006595._056606.job.log.tg
[2025-06-04 12:15:11] 2025-06-04 16:14:43,551 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 12:15:11] 2025-06-04 16:14:43,551 | INFO     | summary of transferred files:
[2025-06-04 12:15:11] 2025-06-04 16:14:43,551 | INFO     |  -- lfn=log.45006595._056606.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 12:15:11] 2025-06-04 16:14:43,551 | INFO     | stage-out finished correctly
[2025-06-04 12:15:11] 2025-06-04 16:14:43,618 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 12:15:11] 2025-06-04 16:14:44,088 | INFO     | monitor loop #232: job 0:6679668415 is in state 'finished'
[2025-06-04 12:15:11] 2025-06-04 16:14:44,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:15:11] 2025-06-04 16:14:45,653 | INFO     | job 6679668415 has state=finished
[2025-06-04 12:15:11] 2025-06-04 16:14:45,653 | INFO     | preparing for final server update for job 6679668415 in state='finished'
[2025-06-04 12:15:11] 2025-06-04 16:14:45,653 | INFO     | this job has now completed (state=finished)
[2025-06-04 12:15:11] 2025-06-04 16:14:45,653 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 12:15:11] 2025-06-04 16:14:45,653 | INFO     | log transfer has been attempted: DONE
[2025-06-04 12:15:11] 2025-06-04 16:14:45,653 | INFO     | job 6679668415 has finished - writing final server update
[2025-06-04 12:15:11] 2025-06-04 16:14:45,654 | INFO     | total number of processed events: 400 (read)
[2025-06-04 12:15:11] 2025-06-04 16:14:45,670 | INFO     | executing command: lscpu
[2025-06-04 12:15:11] 2025-06-04 16:14:45,770 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 12:15:11] 2025-06-04 16:14:46,591 | INFO     | monitor loop #233: job 0:6679668415 is in state 'finished'
[2025-06-04 12:15:11] 2025-06-04 16:14:46,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:15:11] 2025-06-04 16:14:49,095 | INFO     | monitor loop #234: job 0:6679668415 is in state 'finished'
[2025-06-04 12:15:11] 2025-06-04 16:14:49,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:15:11] 2025-06-04 16:14:50,031 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 12:15:11] 2025-06-04 16:14:50,031 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679668415/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:15:11] 2025-06-04 16:14:50,033 | INFO     | extracted standard info from prmon json
[2025-06-04 12:15:11] 2025-06-04 16:14:50,033 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:15:11] 2025-06-04 16:14:50,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:15:11] 2025-06-04 16:14:50,033 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:15:11] 2025-06-04 16:14:50,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:15:11] 2025-06-04 16:14:50,035 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:15:11] 2025-06-04 16:14:50,035 | INFO     | sum of square deviations: 28242390.0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,035 | INFO     | sum of deviations: -474493197.0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,035 | INFO     | mean x: 1749052183.0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,035 | INFO     | mean y: 2386934.688888889
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | -- intersect: 29387766926.661915
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | intersect: 29387766926.661915
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | chi2: 0.028510580559385434
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | -- intersect: 29387766926.661915
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | current memory leak: -16.80 B/s (using 45 data points, chi2=0.03)
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | ..............................
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | . Timing measurements:
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | . get job = 0 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | . initial setup = 2 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,036 | INFO     | . payload setup = 6 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,037 | INFO     | . stage-in = 0 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,037 | INFO     | . payload execution = 3147 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,037 | INFO     | . stage-out = 0 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,037 | INFO     | . log creation = 0 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,037 | INFO     | ..............................
[2025-06-04 12:15:11] 2025-06-04 16:14:50,505 | INFO     | 
[2025-06-04 12:15:11] 2025-06-04 16:14:50,505 | INFO     | job summary report
[2025-06-04 12:15:11] 2025-06-04 16:14:50,505 | INFO     | --------------------------------------------------
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | PanDA job id: 6679668415
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | task id: 45006595
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | errors: (none)
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | pilot state: finished 
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | transexitcode: 0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | exeerrorcode: 0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | exeerrordiag: 
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | exitcode: 0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | exitmsg: OK
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | cpuconsumptiontime: 23176 s
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | nevents: 400
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | neventsw: 0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | pid: 3709959
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | pgrp: 3709959
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | corecount: 8
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | event service: False
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | sizes: {0: 2397241, 5: 2397447, 11: 2397503, 3157: 2422896, 3158: 2422895, 3159: 2432076, 3165: 2432190}
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | --------------------------------------------------
[2025-06-04 12:15:11] 2025-06-04 16:14:50,506 | INFO     | 
[2025-06-04 12:15:11] 2025-06-04 16:14:50,507 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,528 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | job 6679668415 has completed (purged errors)
[2025-06-04 12:15:11] 2025-06-04 16:14:50,529 | INFO     | overall cleanup function is called
[2025-06-04 12:15:11] 2025-06-04 16:14:51,537 | INFO     | --- collectZombieJob: --- 10, [3709959]
[2025-06-04 12:15:11] 2025-06-04 16:14:51,538 | INFO     | zombie collector waiting for pid 3709959
[2025-06-04 12:15:11] 2025-06-04 16:14:51,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:15:11] 2025-06-04 16:14:51,538 | INFO     | collected zombie processes
[2025-06-04 12:15:11] 2025-06-04 16:14:51,538 | INFO     | will attempt to kill all subprocesses of pid=3709959
[2025-06-04 12:15:11] 2025-06-04 16:14:52,341 | INFO     | process IDs to be killed: [3709959] (in reverse order)
[2025-06-04 12:15:11] 2025-06-04 16:14:52,506 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:15:11] 2025-06-04 16:14:52,506 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:15:11] 2025-06-04 16:14:52,569 | INFO     | did not find any defunct processes belonging to 3709959
[2025-06-04 12:15:11] 2025-06-04 16:14:52,615 | INFO     | did not find any defunct processes belonging to 3709959
[2025-06-04 12:15:11] 2025-06-04 16:14:52,615 | INFO     | ready for new job
[2025-06-04 12:15:11] 2025-06-04 16:14:52,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:15:11] 2025-06-04 16:14:52,617 | INFO     | **************************************
[2025-06-04 12:15:11] 2025-06-04 16:14:52,617 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:15:11] 2025-06-04 16:14:52,617 | INFO     | **************************************
[2025-06-04 12:15:11] 2025-06-04 16:14:52,617 | INFO     | 
[2025-06-04 12:15:11] 2025-06-04 16:14:52,634 | INFO     | architecture information:
[2025-06-04 12:15:11] 2025-06-04 16:14:52,635 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:15:11] 2025-06-04 16:14:52,650 | INFO     | cat /etc/os-release:
[2025-06-04 12:15:11] NAME="CentOS Linux"
[2025-06-04 12:15:11] VERSION="7 (Core)"
[2025-06-04 12:15:11] ID="centos"
[2025-06-04 12:15:11] ID_LIKE="rhel fedora"
[2025-06-04 12:15:11] VERSION_ID="7"
[2025-06-04 12:15:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:15:11] ANSI_COLOR="0;31"
[2025-06-04 12:15:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:15:11] HOME_URL="https://www.centos.org/"
[2025-06-04 12:15:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:15:11] 
[2025-06-04 12:15:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:15:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:15:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:15:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:15:11] 
[2025-06-04 12:15:11] 2025-06-04 16:14:52,650 | INFO     | **************************************
[2025-06-04 12:15:11] 2025-06-04 16:14:52,719 | INFO     | PID=3685386 has CPU usage=15.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 12:15:11] 2025-06-04 16:14:52,719 | INFO     | .. there are 40 such processes running
[2025-06-04 12:15:11] 2025-06-04 16:14:53,153 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 12:15:11] 2025-06-04 16:14:53,173 | INFO     | sufficient remaining disk space (76032245760 B)
[2025-06-04 12:15:11] 2025-06-04 16:14:53,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:15:11] 2025-06-04 16:14:53,174 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:15:11] 2025-06-04 16:14:53,174 | INFO     | update_server=False
[2025-06-04 12:15:11] 2025-06-04 16:14:53,174 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:15:11] 2025-06-04 16:14:53,174 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:15:11] 2025-06-04 16:14:53,175 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 12:15:11] 2025-06-04 16:14:53,175 | INFO     | aborting loop
[2025-06-04 12:15:11] 2025-06-04 16:14:53,175 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:15:11] 2025-06-04 16:14:53,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:15:11] 2025-06-04 16:14:53,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:15:11] 2025-06-04 16:14:53,324 | INFO     | all data control threads have been joined
[2025-06-04 12:15:11] 2025-06-04 16:14:54,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:15:11] 2025-06-04 16:14:54,180 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:54,181 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:54,191 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:15:11] 2025-06-04 16:14:54,268 | INFO     | all payload control threads have been joined
[2025-06-04 12:15:11] 2025-06-04 16:14:54,278 | INFO     | all job control threads have been joined
[2025-06-04 12:15:11] 2025-06-04 16:14:54,319 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:54,329 | INFO     | [data] control thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:54,620 | INFO     | [job] validate thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:54,783 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:54,811 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:54,957 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:55,027 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:55,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:15:11] 2025-06-04 16:14:55,204 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:55,273 | INFO     | [payload] control thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:55,283 | INFO     | [job] control thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:56,123 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:56,136 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:14:58,197 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:15:03,874 | INFO     | job.realtimelogging is not enabled
[2025-06-04 12:15:11] 2025-06-04 16:15:04,875 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:15:11] 2025-06-04 16:15:05,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140699669337920)>', '<ExcThread(monitor, started 140698900756224)>']
[2025-06-04 12:15:11] 2025-06-04 16:15:06,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:15:11] 2025-06-04 16:15:06,240 | INFO     | [monitor] control thread has ended
[2025-06-04 12:15:11] 2025-06-04 16:15:10,874 | INFO     | all workflow threads have been joined
[2025-06-04 12:15:11] 2025-06-04 16:15:10,874 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:15:11] 2025-06-04 16:15:10,875 | INFO     | traces error code: 0
[2025-06-04 12:15:11] 2025-06-04 16:15:10,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:15:11] 2025-06-04 16:15:11,035 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:15:11] 2025-06-04 16:15:11,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:15:11] 2025-06-04 16:15:11,041 [wrapper] pilotpid: 3685386
[2025-06-04 12:15:11] 2025-06-04 16:15:11,044 [wrapper] Pilot exit status: 0
[2025-06-04 12:15:11] 2025-06-04 16:15:11,056 [wrapper] pandaids: 6679668415
[2025-06-04 12:15:11] 2025-06-04 16:15:11,181 [wrapper] cleanup supervisor_pilot  147625 3685387
[2025-06-04 12:15:11] 2025-06-04 16:15:11,184 [wrapper] Test setup, not cleaning
[2025-06-04 12:15:11] 2025-06-04 16:15:11,187 [wrapper] apfmon messages muted
[2025-06-04 12:15:11] 2025-06-04 16:15:11,190 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:15:11] 2025-06-04 16:15:11,193 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:15:11]  *** Error codes and diagnostics ***
[2025-06-04 12:15:11]     "exeErrorCode": 0,
[2025-06-04 12:15:11]     "exeErrorDiag": "",
[2025-06-04 12:15:11]     "pilotErrorCode": 0,
[2025-06-04 12:15:11]     "pilotErrorDiag": "",
[2025-06-04 12:15:11]  *** Listing of results directory ***
[2025-06-04 12:15:11] total 389056
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 07:48 pilot3.tar.gz
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 07:53 queuedata.json
[2025-06-04 12:15:11] -rwx------. 1 boincer umatlas     37140 Jun  4 07:54 runpilot2-wrapper.sh
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas       100 Jun  4 11:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:15:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 11:21 run_atlas
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas       105 Jun  4 11:21 job.xml
[2025-06-04 12:15:11] -rw-r--r--. 2 boincer umatlas 216199708 Jun  4 11:21 EVNT.45006593._002079.pool.root.1
[2025-06-04 12:15:11] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 11:21 shared
[2025-06-04 12:15:11] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 11:21 input.tar.gz
[2025-06-04 12:15:11] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 11:21 start_atlas.sh
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas         0 Jun  4 11:21 boinc_lockfile
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 11:21 pandaJob.out
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas    990989 Jun  4 11:21 agis_schedconf.cvmfs.json
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas   1598969 Jun  4 11:21 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:15:11] drwx------. 4 boincer umatlas      4096 Jun  4 11:21 pilot3
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas      6932 Jun  4 12:10 init_data.xml
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas       529 Jun  4 12:14 boinc_task_state.xml
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas 177099727 Jun  4 12:14 HITS.45006595._056606.pool.root.1
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas        95 Jun  4 12:14 pilot_heartbeat.json
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas      1035 Jun  4 12:14 memory_monitor_summary.json
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas    296021 Jun  4 12:14 log.45006595._056606.job.log.tgz.1
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas      7685 Jun  4 12:14 heartbeat.json
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 12:15 boinc_mmap_file
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas        27 Jun  4 12:15 wrapper_checkpoint.txt
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas      4944 Jun  4 12:15 pilotlog.txt
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas    329113 Jun  4 12:15 log.45006595._056606.job.log.1
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas       357 Jun  4 12:15 output.list
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas       620 Jun  4 12:15 runtime_log
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas    645120 Jun  4 12:15 result.tar.gz
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 12:15 runtime_log.err
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas       651 Jun  4 12:15 oodMDmgs1g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbynKDmfF1o3m.diag
[2025-06-04 12:15:11] -rw-r--r--. 1 boincer umatlas     21565 Jun  4 12:15 stderr.txt
[2025-06-04 12:15:11] HITS file was successfully produced:
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas 177099727 Jun  4 12:14 shared/HITS.pool.root.1
[2025-06-04 12:15:11]  *** Contents of shared directory: ***
[2025-06-04 12:15:11] total 385244
[2025-06-04 12:15:11] -rw-r--r--. 2 boincer umatlas 216199708 Jun  4 11:21 ATLAS.root_0
[2025-06-04 12:15:11] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 11:21 input.tar.gz
[2025-06-04 12:15:11] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 11:21 start_atlas.sh
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas 177099727 Jun  4 12:14 HITS.pool.root.1
[2025-06-04 12:15:11] -rw-------. 1 boincer umatlas    645120 Jun  4 12:15 result.tar.gz
12:15:12 (3678584): run_atlas exited; CPU time 23300.808834
12:15:12 (3678584): called boinc_finish(0)

</stderr_txt>
]]>

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