Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:44:22 (31862): wrapper (7.7.26015): starting
01:44:22 (31862): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 01:44:22] Arguments: --nthreads 8
[2025-06-05 01:44:22] Threads: 8
[2025-06-05 01:44:22] Checking for CVMFS
[2025-06-05 01:44:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:44:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:44:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:44:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:44:23] 2.11.2.0 8450 33897 95272 146798 2 201 17133768 25165825 3632 130560 0 17997947 99.775 20540968 2026 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 01:44:23] CVMFS is ok
[2025-06-05 01:44:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:44:23] Checking for apptainer binary...
[2025-06-05 01:44:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:44:23] Running /usr/bin/apptainer --version
[2025-06-05 01:44:23] apptainer version 1.3.2-1.el7
[2025-06-05 01:44:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:44:24] cg-vwn262.simple-grid.lan
[2025-06-05 01:44:24] apptainer works
[2025-06-05 01:44:24] Set ATHENA_PROC_NUMBER=8
[2025-06-05 01:44:24] Set ATHENA_CORE_NUMBER=8
[2025-06-05 01:44:24] Starting ATLAS job with PandaID=6666851123
[2025-06-05 01:44:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 07:20:30]  *** The last 200 lines of the pilot log: ***
[2025-06-05 07:20:30] 2025-06-05 04:59:36,346 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6666851123/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 07:20:30] 2025-06-05 04:59:36,347 | INFO     | extracted standard info from prmon json
[2025-06-05 07:20:30] 2025-06-05 04:59:36,347 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 07:20:30] 2025-06-05 04:59:36,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 07:20:30] 2025-06-05 04:59:36,348 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 07:20:30] 2025-06-05 04:59:36,348 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 07:20:30] 2025-06-05 04:59:36,354 | INFO     | fitting pss+swap vs Time
[2025-06-05 07:20:30] 2025-06-05 04:59:36,355 | INFO     | sum of square deviations: 9059954057.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,366 | INFO     | sum of deviations: 112219138.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,366 | INFO     | mean x: 1749090107.5
[2025-06-05 07:20:30] 2025-06-05 04:59:36,366 | INFO     | mean y: 2498481.7662337665
[2025-06-05 07:20:30] 2025-06-05 04:59:36,366 | INFO     | -- intersect: -19166240.031811588
[2025-06-05 07:20:30] 2025-06-05 04:59:36,367 | INFO     | intersect: -19166240.031811588
[2025-06-05 07:20:30] 2025-06-05 04:59:36,367 | INFO     | chi2: 2.5190800367245547
[2025-06-05 07:20:30] 2025-06-05 04:59:36,368 | INFO     | sum of square deviations: 8625843592.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,371 | INFO     | sum of deviations: 20258294223.999992
[2025-06-05 07:20:30] 2025-06-05 04:59:36,371 | INFO     | mean x: 1749089955.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,371 | INFO     | mean y: 2505464.99669967
[2025-06-05 07:20:30] 2025-06-05 04:59:36,371 | INFO     | -- intersect: -4105333792.08137
[2025-06-05 07:20:30] 2025-06-05 04:59:36,372 | INFO     | intersect: -4105333792.08137
[2025-06-05 07:20:30] 2025-06-05 04:59:36,372 | INFO     | chi2: 1.7517938108689524
[2025-06-05 07:20:30] 2025-06-05 04:59:36,372 | INFO     | current chi2=1.7517938108689524 (change=30.45898560862202 %)
[2025-06-05 07:20:30] 2025-06-05 04:59:36,373 | INFO     | sum of square deviations: 8205826414.5
[2025-06-05 07:20:30] 2025-06-05 04:59:36,376 | INFO     | sum of deviations: 19856887780.500004
[2025-06-05 07:20:30] 2025-06-05 04:59:36,376 | INFO     | mean x: 1749089802.5
[2025-06-05 07:20:30] 2025-06-05 04:59:36,376 | INFO     | mean y: 2505319.244966443
[2025-06-05 07:20:30] 2025-06-05 04:59:36,376 | INFO     | -- intersect: -4230033631.967504
[2025-06-05 07:20:30] 2025-06-05 04:59:36,384 | INFO     | intersect: -4230033631.967504
[2025-06-05 07:20:30] 2025-06-05 04:59:36,385 | INFO     | chi2: 1.75224573868614
[2025-06-05 07:20:30] 2025-06-05 04:59:36,385 | INFO     | current chi2=1.75224573868614 (change=-0.02579800284621126 %)
[2025-06-05 07:20:30] 2025-06-05 04:59:36,385 | INFO     | right removable region: 297
[2025-06-05 07:20:30] 2025-06-05 04:59:36,385 | INFO     | sum of square deviations: 8625843592.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,388 | INFO     | sum of deviations: -51820903182.999985
[2025-06-05 07:20:30] 2025-06-05 04:59:36,389 | INFO     | mean x: 1749090260.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,389 | INFO     | mean y: 2516608.2277227724
[2025-06-05 07:20:30] 2025-06-05 04:59:36,389 | INFO     | -- intersect: 10510409089.126799
[2025-06-05 07:20:30] 2025-06-05 04:59:36,389 | INFO     | intersect: 10510409089.126799
[2025-06-05 07:20:30] 2025-06-05 04:59:36,390 | INFO     | chi2: 0.9576017920266874
[2025-06-05 07:20:30] 2025-06-05 04:59:36,390 | INFO     | current chi2=0.9576017920266874 (change=61.98605133357281 %)
[2025-06-05 07:20:30] 2025-06-05 04:59:36,390 | INFO     | sum of square deviations: 8205826414.5
[2025-06-05 07:20:30] 2025-06-05 04:59:36,393 | INFO     | sum of deviations: -49124693118.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,394 | INFO     | mean x: 1749090412.5
[2025-06-05 07:20:30] 2025-06-05 04:59:36,394 | INFO     | mean y: 2515610.2281879196
[2025-06-05 07:20:30] 2025-06-05 04:59:36,394 | INFO     | -- intersect: 10473554773.068443
[2025-06-05 07:20:30] 2025-06-05 04:59:36,394 | INFO     | intersect: 10473554773.068443
[2025-06-05 07:20:30] 2025-06-05 04:59:36,395 | INFO     | chi2: 0.9443482214011246
[2025-06-05 07:20:30] 2025-06-05 04:59:36,395 | INFO     | current chi2=0.9443482214011246 (change=1.3840377843814013 %)
[2025-06-05 07:20:30] 2025-06-05 04:59:36,395 | INFO     | left removable region: 20
[2025-06-05 07:20:30] 2025-06-05 04:59:36,395 | INFO     | sum of square deviations: 6590404498.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,398 | INFO     | sum of deviations: -9385633606.000002
[2025-06-05 07:20:30] 2025-06-05 04:59:36,398 | INFO     | mean x: 1749090382.0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,398 | INFO     | mean y: 2515475.501805054
[2025-06-05 07:20:30] 2025-06-05 04:59:36,398 | INFO     | -- intersect: 2493458402.330115
[2025-06-05 07:20:30] 2025-06-05 04:59:36,399 | INFO     | intersect: 2493458402.330115
[2025-06-05 07:20:30] 2025-06-05 04:59:36,399 | INFO     | chi2: 0.10130212079558101
[2025-06-05 07:20:30] 2025-06-05 04:59:36,399 | INFO     | -- intersect: 2493458402.330115
[2025-06-05 07:20:30] 2025-06-05 04:59:36,399 | INFO     | current memory leak: -1.42 B/s (using 277 data points, chi2=0.10)
[2025-06-05 07:20:30] 2025-06-05 04:59:36,400 | INFO     | ..............................
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . Timing measurements:
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . get job = 0 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . initial setup = 2 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . payload setup = 13 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . stage-in = 0 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . payload execution = 18752 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . stage-out = 4 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | . log creation = 1 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,401 | INFO     | ..............................
[2025-06-05 07:20:30] 2025-06-05 04:59:36,578 | INFO     | 
[2025-06-05 07:20:30] 2025-06-05 04:59:36,578 | INFO     | job summary report
[2025-06-05 07:20:30] 2025-06-05 04:59:36,578 | INFO     | --------------------------------------------------
[2025-06-05 07:20:30] 2025-06-05 04:59:36,578 | INFO     | PanDA job id: 6666851123
[2025-06-05 07:20:30] 2025-06-05 04:59:36,578 | INFO     | task id: 44871837
[2025-06-05 07:20:30] 2025-06-05 04:59:36,578 | INFO     | errors: (none)
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | pilot state: finished 
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | transexitcode: 0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | exeerrorcode: 0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | exeerrordiag: 
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | exitcode: 0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | exitmsg: OK
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | cpuconsumptiontime: 71782 s
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | nevents: 400
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | neventsw: 0
[2025-06-05 07:20:30] 2025-06-05 04:59:36,579 | INFO     | pid: 11738
[2025-06-05 07:20:30] 2025-06-05 04:59:36,580 | INFO     | pgrp: 11738
[2025-06-05 07:20:30] 2025-06-05 04:59:36,580 | INFO     | corecount: 8
[2025-06-05 07:20:30] 2025-06-05 04:59:36,580 | INFO     | event service: False
[2025-06-05 07:20:30] 2025-06-05 04:59:36,580 | INFO     | sizes: {0: 2397216, 1: 2397415, 10: 2397621, 12: 2397649, 18770: 2429415, 18771: 2429414, 18775: 2438541, 18777: 2438597, 18869: 2438767}
[2025-06-05 07:20:30] 2025-06-05 04:59:36,580 | INFO     | --------------------------------------------------
[2025-06-05 07:20:30] 2025-06-05 04:59:36,580 | INFO     | 
[2025-06-05 07:20:30] 2025-06-05 04:59:36,580 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-05 07:20:30] 2025-06-05 04:59:37,198 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,198 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,198 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,199 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,200 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 07:20:30] 2025-06-05 04:59:37,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,200 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 07:20:30] 2025-06-05 04:59:37,200 | INFO     | job 6666851123 has completed (purged errors)
[2025-06-05 07:20:30] 2025-06-05 04:59:37,200 | INFO     | overall cleanup function is called
[2025-06-05 07:20:30] 2025-06-05 04:59:38,209 | INFO     | --- collectZombieJob: --- 10, [11738]
[2025-06-05 07:20:30] 2025-06-05 04:59:38,209 | INFO     | zombie collector waiting for pid 11738
[2025-06-05 07:20:30] 2025-06-05 04:59:38,209 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 07:20:30] 2025-06-05 04:59:38,209 | INFO     | collected zombie processes
[2025-06-05 07:20:30] 2025-06-05 04:59:38,209 | INFO     | will attempt to kill all subprocesses of pid=11738
[2025-06-05 07:20:30] 2025-06-05 04:59:38,339 | INFO     | process IDs to be killed: [11738] (in reverse order)
[2025-06-05 07:20:30] 2025-06-05 04:59:38,954 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 07:20:30] 2025-06-05 04:59:38,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 07:20:30] 2025-06-05 04:59:38,958 | INFO     | did not find any defunct processes belonging to 11738
[2025-06-05 07:20:30] 2025-06-05 04:59:38,961 | INFO     | did not find any defunct processes belonging to 11738
[2025-06-05 07:20:30] 2025-06-05 04:59:38,961 | INFO     | ready for new job
[2025-06-05 07:20:30] 2025-06-05 04:59:38,961 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 07:20:30] 2025-06-05 04:59:38,963 | INFO     | **************************************
[2025-06-05 07:20:30] 2025-06-05 04:59:38,963 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 07:20:30] 2025-06-05 04:59:38,963 | INFO     | **************************************
[2025-06-05 07:20:30] 2025-06-05 04:59:38,964 | INFO     | 
[2025-06-05 07:20:30] 2025-06-05 04:59:38,964 | INFO     | pilot is running in a VM
[2025-06-05 07:20:30] 2025-06-05 04:59:38,964 | INFO     | architecture information:
[2025-06-05 07:20:30] 2025-06-05 04:59:38,980 | INFO     | executing command: cat /etc/os-release
[2025-06-05 07:20:30] 2025-06-05 04:59:39,263 | INFO     | cat /etc/os-release:
[2025-06-05 07:20:30] NAME="CentOS Linux"
[2025-06-05 07:20:30] VERSION="7 (Core)"
[2025-06-05 07:20:30] ID="centos"
[2025-06-05 07:20:30] ID_LIKE="rhel fedora"
[2025-06-05 07:20:30] VERSION_ID="7"
[2025-06-05 07:20:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 07:20:30] ANSI_COLOR="0;31"
[2025-06-05 07:20:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 07:20:30] HOME_URL="https://www.centos.org/"
[2025-06-05 07:20:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 07:20:30] 
[2025-06-05 07:20:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 07:20:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 07:20:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 07:20:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 07:20:30] 
[2025-06-05 07:20:30] 2025-06-05 04:59:39,263 | INFO     | **************************************
[2025-06-05 07:20:30] 2025-06-05 04:59:39,767 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-05 07:20:30] 2025-06-05 04:59:39,963 | INFO     | sufficient remaining disk space (496909680640 B)
[2025-06-05 07:20:30] 2025-06-05 04:59:39,964 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 07:20:30] 2025-06-05 04:59:39,964 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 07:20:30] 2025-06-05 04:59:39,964 | INFO     | update_server=False
[2025-06-05 07:20:30] 2025-06-05 04:59:39,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 07:20:30] 2025-06-05 04:59:39,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 07:20:30] 2025-06-05 04:59:40,161 | INFO     | all data control threads have been joined
[2025-06-05 07:20:30] 2025-06-05 04:59:40,398 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 07:20:30] 2025-06-05 04:59:40,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 07:20:30] 2025-06-05 04:59:40,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 07:20:30] 2025-06-05 04:59:40,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:20:30] 2025-06-05 04:59:40,477 | INFO     | aborting loop
[2025-06-05 07:20:30] 2025-06-05 04:59:40,971 | INFO     | [job] retrieve thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 07:20:30] 2025-06-05 04:59:41,166 | INFO     | [data] control thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,239 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,305 | INFO     | [job] validate thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,315 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,393 | INFO     | [data] copytool_in thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,431 | INFO     | all payload control threads have been joined
[2025-06-05 07:20:30] 2025-06-05 04:59:41,431 | INFO     | all job control threads have been joined
[2025-06-05 07:20:30] 2025-06-05 04:59:41,483 | INFO     | [job] job monitor thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:20:30] 2025-06-05 04:59:41,608 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:41,977 | INFO     | [data] copytool_out thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:42,287 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:42,352 | INFO     | [payload] failed_post thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:42,436 | INFO     | [payload] control thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:42,436 | INFO     | [job] control thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:42,568 | INFO     | [payload] validate_post thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:42,598 | INFO     | [job] queue monitor thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:45,011 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 07:20:30] 2025-06-05 04:59:45,246 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011835160384)>', '<ExcThread(monitor, started 140011403982592)>']
[2025-06-05 07:20:30] 2025-06-05 04:59:45,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 07:20:30] 2025-06-05 04:59:45,427 | INFO     | [monitor] control thread has ended
[2025-06-05 07:20:30] 2025-06-05 04:59:50,272 | INFO     | all workflow threads have been joined
[2025-06-05 07:20:30] 2025-06-05 04:59:50,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 07:20:30] 2025-06-05 04:59:50,272 | INFO     | traces error code: 0
[2025-06-05 07:20:30] 2025-06-05 04:59:50,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 07:20:30] 2025-06-05 04:59:50,626 [wrapper] ==== pilot stdout END ====
[2025-06-05 07:20:30] 2025-06-05 04:59:50,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 07:20:30] 2025-06-05 04:59:50,729 [wrapper] pilotpid: 3949
[2025-06-05 07:20:30] 2025-06-05 04:59:50,775 [wrapper] Pilot exit status: 0
[2025-06-05 07:20:30] 2025-06-05 04:59:51,203 [wrapper] pandaids: 6666851123
[2025-06-05 07:20:30] 2025-06-05 04:59:51,964 [wrapper] cleanup supervisor_pilot 17888 3950
[2025-06-05 07:20:30] 2025-06-05 04:59:52,007 [wrapper] Test setup, not cleaning
[2025-06-05 07:20:30] 2025-06-05 04:59:52,078 [wrapper] apfmon messages muted
[2025-06-05 07:20:30] 2025-06-05 04:59:52,152 [wrapper] ==== wrapper stdout END ====
[2025-06-05 07:20:30] 2025-06-05 04:59:52,230 [wrapper] ==== wrapper stderr END ====
[2025-06-05 07:20:30]  *** Error codes and diagnostics ***
[2025-06-05 07:20:30]     "exeErrorCode": 0,
[2025-06-05 07:20:30]     "exeErrorDiag": "",
[2025-06-05 07:20:30]     "pilotErrorCode": 0,
[2025-06-05 07:20:30]     "pilotErrorDiag": "",
[2025-06-05 07:20:30]  *** Listing of results directory ***
[2025-06-05 07:20:30] total 421496
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc    495897 May 27 10:13 pilot3.tar.gz
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc      5111 May 27 11:18 queuedata.json
[2025-06-05 07:20:30] -rwx------. 1 boinc boinc     37140 May 27 11:22 runpilot2-wrapper.sh
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc       100 Jun  5 01:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 07:20:30] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 01:44 run_atlas
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc       105 Jun  5 01:44 job.xml
[2025-06-05 07:20:30] -rw-r--r--. 2 boinc boinc 223799775 Jun  5 01:44 EVNT.44871834._002569.pool.root.1
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc      6392 Jun  5 01:44 init_data.xml
[2025-06-05 07:20:30] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:44 start_atlas.sh
[2025-06-05 07:20:30] drwxrwx--x. 2 boinc boinc        68 Jun  5 01:44 shared
[2025-06-05 07:20:30] -rw-r--r--. 2 boinc boinc    508886 Jun  5 01:44 input.tar.gz
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc         0 Jun  5 01:44 boinc_lockfile
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc      2556 Jun  5 01:44 pandaJob.out
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc    987117 Jun  5 01:44 agis_schedconf.cvmfs.json
[2025-06-05 07:20:30] drwx------. 4 boinc boinc      4096 Jun  5 01:44 pilot3
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc 199950853 Jun  5 06:56 HITS.44871837._065171.pool.root.1
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc       531 Jun  5 06:56 boinc_task_state.xml
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc      1016 Jun  5 06:57 memory_monitor_summary.json
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc   1598969 Jun  5 06:58 agis_ddmendpoints.agis.ALL.json
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc    409655 Jun  5 06:58 log.44871837._065171.job.log.tgz.1
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc        95 Jun  5 06:59 pilot_heartbeat.json
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc      7686 Jun  5 06:59 heartbeat.json
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc      4417 Jun  5 06:59 pilotlog.txt
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc   1613309 Jun  5 06:59 log.44871837._065171.job.log.1
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc       357 Jun  5 06:59 output.list
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc       620 Jun  5 06:59 runtime_log
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc   2037760 Jun  5 06:59 result.tar.gz
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc      8673 Jun  5 06:59 runtime_log.err
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc       656 Jun  5 06:59 IeqKDmpg5d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWdRKDm92CeKn.diag
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc      8192 Jun  5 07:20 boinc_mmap_file
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc        28 Jun  5 07:20 wrapper_checkpoint.txt
[2025-06-05 07:20:30] -rw-r--r--. 1 boinc boinc     20504 Jun  5 07:20 stderr.txt
[2025-06-05 07:20:30] HITS file was successfully produced:
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc 199950853 Jun  5 06:56 shared/HITS.pool.root.1
[2025-06-05 07:20:30]  *** Contents of shared directory: ***
[2025-06-05 07:20:30] total 416332
[2025-06-05 07:20:30] -rw-r--r--. 2 boinc boinc 223799775 Jun  5 01:44 ATLAS.root_0
[2025-06-05 07:20:30] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:44 start_atlas.sh
[2025-06-05 07:20:30] -rw-r--r--. 2 boinc boinc    508886 Jun  5 01:44 input.tar.gz
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc 199950853 Jun  5 06:56 HITS.pool.root.1
[2025-06-05 07:20:30] -rw-------. 1 boinc boinc   2037760 Jun  5 06:59 result.tar.gz
07:20:32 (31862): run_atlas exited; CPU time 72024.279637
07:20:32 (31862): called boinc_finish(0)

</stderr_txt>
]]>

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