Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:04:10 (1610497): wrapper (7.7.26015): starting
11:04:10 (1610497): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:04:10] Arguments: --nthreads 8
[2025-06-04 11:04:10] Threads: 8
[2025-06-04 11:04:10] Checking for CVMFS
[2025-06-04 11:04:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:04:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:04:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:04:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:04:11] 2.12.6.0 5779 31562 459420 146768 -601 939 25280304 32935936 16269 16776704 3 91031196 99.643 88705201 10214 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 11:04:11] CVMFS is ok
[2025-06-04 11:04:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:04:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:04:11] Further information can be found at the LHC@home message board.
[2025-06-04 11:04:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:04:11] Checking for apptainer binary...
[2025-06-04 11:04:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:04:11] Running /usr/bin/apptainer --version
[2025-06-04 11:04:11] apptainer version 1.4.1-1.el9
[2025-06-04 11:04:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:04:11] c6-12-25-2.aglt2.org
[2025-06-04 11:04:11] apptainer works
[2025-06-04 11:04:11] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:04:11] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:04:11] Starting ATLAS job with PandaID=6679680378
[2025-06-04 11:04:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:22:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:22:12] 2025-06-04 18:21:55,822 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6679680378/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 14:22:12] 2025-06-04 18:21:55,823 | INFO     | extracted standard info from prmon json
[2025-06-04 14:22:12] 2025-06-04 18:21:55,824 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:22:12] 2025-06-04 18:21:55,824 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:22:12] 2025-06-04 18:21:55,825 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:22:12] 2025-06-04 18:21:55,825 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:22:12] 2025-06-04 18:21:55,830 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:22:12] 2025-06-04 18:21:55,831 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 14:22:12] 2025-06-04 18:21:55,833 | INFO     | sum of deviations: 53716849703.50001
[2025-06-04 14:22:12] 2025-06-04 18:21:55,833 | INFO     | mean x: 1749055402.5
[2025-06-04 14:22:12] 2025-06-04 18:21:55,833 | INFO     | mean y: 2196807.56185567
[2025-06-04 14:22:12] 2025-06-04 18:21:55,834 | INFO     | -- intersect: -41497223186.82415
[2025-06-04 14:22:12] 2025-06-04 18:21:55,834 | INFO     | intersect: -41497223186.82415
[2025-06-04 14:22:12] 2025-06-04 18:21:55,834 | INFO     | chi2: 3.326548470868473
[2025-06-04 14:22:12] 2025-06-04 18:21:55,835 | INFO     | sum of square deviations: 2093397390.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,836 | INFO     | sum of deviations: 64779975349.00001
[2025-06-04 14:22:12] 2025-06-04 18:21:55,837 | INFO     | mean x: 1749055250.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,837 | INFO     | mean y: 2206478.3492063493
[2025-06-04 14:22:12] 2025-06-04 18:21:55,837 | INFO     | -- intersect: -54122135378.71169
[2025-06-04 14:22:12] 2025-06-04 18:21:55,837 | INFO     | intersect: -54122135378.71169
[2025-06-04 14:22:12] 2025-06-04 18:21:55,837 | INFO     | chi2: 2.524226420665773
[2025-06-04 14:22:12] 2025-06-04 18:21:55,838 | INFO     | current chi2=2.524226420665773 (change=24.118754235173824 %)
[2025-06-04 14:22:12] 2025-06-04 18:21:55,838 | INFO     | right removable region: 188
[2025-06-04 14:22:12] 2025-06-04 18:21:55,838 | INFO     | sum of square deviations: 2093397390.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,840 | INFO     | sum of deviations: 15123507044.999998
[2025-06-04 14:22:12] 2025-06-04 18:21:55,840 | INFO     | mean x: 1749055555.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,840 | INFO     | mean y: 2231142.6825396824
[2025-06-04 14:22:12] 2025-06-04 18:21:55,841 | INFO     | -- intersect: -12633618187.45295
[2025-06-04 14:22:12] 2025-06-04 18:21:55,841 | INFO     | intersect: -12633618187.45295
[2025-06-04 14:22:12] 2025-06-04 18:21:55,841 | INFO     | chi2: 1.2933685687031258
[2025-06-04 14:22:12] 2025-06-04 18:21:55,841 | INFO     | current chi2=1.2933685687031258 (change=61.11980390397073 %)
[2025-06-04 14:22:12] 2025-06-04 18:21:55,842 | INFO     | sum of square deviations: 1931608310.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,843 | INFO     | sum of deviations: -2366345916.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,844 | INFO     | mean x: 1749055707.5
[2025-06-04 14:22:12] 2025-06-04 18:21:55,844 | INFO     | mean y: 2247566.8260869565
[2025-06-04 14:22:12] 2025-06-04 18:21:55,844 | INFO     | -- intersect: 2144954661.6713746
[2025-06-04 14:22:12] 2025-06-04 18:21:55,844 | INFO     | intersect: 2144954661.6713746
[2025-06-04 14:22:12] 2025-06-04 18:21:55,844 | INFO     | chi2: 0.9150984580382215
[2025-06-04 14:22:12] 2025-06-04 18:21:55,845 | INFO     | current chi2=0.9150984580382215 (change=29.246892171208373 %)
[2025-06-04 14:22:12] 2025-06-04 18:21:55,845 | INFO     | sum of square deviations: 1778377530.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,847 | INFO     | sum of deviations: -6737432127.000001
[2025-06-04 14:22:12] 2025-06-04 18:21:55,847 | INFO     | mean x: 1749055860.0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,847 | INFO     | mean y: 2251867.25698324
[2025-06-04 14:22:12] 2025-06-04 18:21:55,847 | INFO     | -- intersect: 6628598041.95343
[2025-06-04 14:22:12] 2025-06-04 18:21:55,847 | INFO     | intersect: 6628598041.95343
[2025-06-04 14:22:12] 2025-06-04 18:21:55,848 | INFO     | chi2: 0.8768678488974649
[2025-06-04 14:22:12] 2025-06-04 18:21:55,848 | INFO     | current chi2=0.8768678488974649 (change=4.17775910394549 %)
[2025-06-04 14:22:12] 2025-06-04 18:21:55,848 | INFO     | left removable region: 30
[2025-06-04 14:22:12] 2025-06-04 18:21:55,848 | INFO     | sum of square deviations: 1223016419.5
[2025-06-04 14:22:12] 2025-06-04 18:21:55,850 | INFO     | sum of deviations: 2746735114.5000005
[2025-06-04 14:22:12] 2025-06-04 18:21:55,850 | INFO     | mean x: 1749056134.5
[2025-06-04 14:22:12] 2025-06-04 18:21:55,850 | INFO     | mean y: 2266776.3481012657
[2025-06-04 14:22:12] 2025-06-04 18:21:55,850 | INFO     | -- intersect: -3925884821.017093
[2025-06-04 14:22:12] 2025-06-04 18:21:55,850 | INFO     | intersect: -3925884821.017093
[2025-06-04 14:22:12] 2025-06-04 18:21:55,851 | INFO     | chi2: 0.05148719215058018
[2025-06-04 14:22:12] 2025-06-04 18:21:55,851 | INFO     | -- intersect: -3925884821.017093
[2025-06-04 14:22:12] 2025-06-04 18:21:55,851 | INFO     | current memory leak: 2.25 B/s (using 158 data points, chi2=0.05)
[2025-06-04 14:22:12] 2025-06-04 18:21:55,852 | INFO     | ..............................
[2025-06-04 14:22:12] 2025-06-04 18:21:55,852 | INFO     | . Timing measurements:
[2025-06-04 14:22:12] 2025-06-04 18:21:55,852 | INFO     | . get job = 0 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,853 | INFO     | . initial setup = 4 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,853 | INFO     | . payload setup = 13 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,853 | INFO     | . stage-in = 0 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,853 | INFO     | . payload execution = 11787 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,853 | INFO     | . stage-out = 6 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,853 | INFO     | . log creation = 0 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,853 | INFO     | ..............................
[2025-06-04 14:22:12] 2025-06-04 18:21:55,994 | INFO     | 
[2025-06-04 14:22:12] 2025-06-04 18:21:55,995 | INFO     | job summary report
[2025-06-04 14:22:12] 2025-06-04 18:21:55,995 | INFO     | --------------------------------------------------
[2025-06-04 14:22:12] 2025-06-04 18:21:55,995 | INFO     | PanDA job id: 6679680378
[2025-06-04 14:22:12] 2025-06-04 18:21:55,995 | INFO     | task id: 45006595
[2025-06-04 14:22:12] 2025-06-04 18:21:55,995 | INFO     | errors: (none)
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | pilot state: finished 
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | transexitcode: 0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | exeerrorcode: 0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | exeerrordiag: 
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | exitcode: 0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | exitmsg: OK
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | cpuconsumptiontime: 87292 s
[2025-06-04 14:22:12] 2025-06-04 18:21:55,996 | INFO     | nevents: 400
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | neventsw: 0
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | pid: 1637702
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | pgrp: 1637702
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | corecount: 8
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | event service: False
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | sizes: {0: 2397064, 1: 2397148, 2: 2397347, 11: 2397553, 13: 2397581, 11805: 2427430, 11812: 2436371, 11813: 2436427, 11822: 2436597}
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | --------------------------------------------------
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | 
[2025-06-04 14:22:12] 2025-06-04 18:21:55,997 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 14:22:12] 2025-06-04 18:21:56,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:22:12] 2025-06-04 18:21:56,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:22:12] 2025-06-04 18:21:56,030 | INFO     | job 6679680378 has completed (purged errors)
[2025-06-04 14:22:12] 2025-06-04 18:21:56,030 | INFO     | overall cleanup function is called
[2025-06-04 14:22:12] 2025-06-04 18:21:57,039 | INFO     | --- collectZombieJob: --- 10, [1637702]
[2025-06-04 14:22:12] 2025-06-04 18:21:57,039 | INFO     | zombie collector waiting for pid 1637702
[2025-06-04 14:22:12] 2025-06-04 18:21:57,040 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:22:12] 2025-06-04 18:21:57,040 | INFO     | collected zombie processes
[2025-06-04 14:22:12] 2025-06-04 18:21:57,041 | INFO     | will attempt to kill all subprocesses of pid=1637702
[2025-06-04 14:22:12] 2025-06-04 18:21:57,877 | INFO     | process IDs to be killed: [1637702] (in reverse order)
[2025-06-04 14:22:12] 2025-06-04 18:21:58,120 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:22:12] 2025-06-04 18:21:58,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:22:12] 2025-06-04 18:21:58,146 | INFO     | did not find any defunct processes belonging to 1637702
[2025-06-04 14:22:12] 2025-06-04 18:21:58,167 | INFO     | did not find any defunct processes belonging to 1637702
[2025-06-04 14:22:12] 2025-06-04 18:21:58,167 | INFO     | ready for new job
[2025-06-04 14:22:12] 2025-06-04 18:21:58,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:22:12] 2025-06-04 18:21:58,171 | INFO     | **************************************
[2025-06-04 14:22:12] 2025-06-04 18:21:58,172 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:22:12] 2025-06-04 18:21:58,172 | INFO     | **************************************
[2025-06-04 14:22:12] 2025-06-04 18:21:58,172 | INFO     | 
[2025-06-04 14:22:12] 2025-06-04 18:21:58,199 | INFO     | architecture information:
[2025-06-04 14:22:12] 2025-06-04 18:21:58,200 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:22:12] 2025-06-04 18:21:58,233 | INFO     | cat /etc/os-release:
[2025-06-04 14:22:12] NAME="CentOS Linux"
[2025-06-04 14:22:12] VERSION="7 (Core)"
[2025-06-04 14:22:12] ID="centos"
[2025-06-04 14:22:12] ID_LIKE="rhel fedora"
[2025-06-04 14:22:12] VERSION_ID="7"
[2025-06-04 14:22:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:22:12] ANSI_COLOR="0;31"
[2025-06-04 14:22:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:22:12] HOME_URL="https://www.centos.org/"
[2025-06-04 14:22:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:22:12] 
[2025-06-04 14:22:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:22:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:22:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:22:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:22:12] 
[2025-06-04 14:22:12] 2025-06-04 18:21:58,233 | INFO     | **************************************
[2025-06-04 14:22:12] 2025-06-04 18:21:58,737 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 14:22:12] 2025-06-04 18:21:58,771 | INFO     | sufficient remaining disk space (95430901760 B)
[2025-06-04 14:22:12] 2025-06-04 18:21:58,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:22:12] 2025-06-04 18:21:58,773 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:22:12] 2025-06-04 18:21:58,773 | INFO     | update_server=False
[2025-06-04 14:22:12] 2025-06-04 18:21:58,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:22:12] 2025-06-04 18:21:58,774 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 14:22:12] 2025-06-04 18:21:58,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:22:12] 2025-06-04 18:21:58,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:22:12] 2025-06-04 18:21:58,775 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:22:12] 2025-06-04 18:21:58,776 | INFO     | aborting loop
[2025-06-04 14:22:12] 2025-06-04 18:21:58,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:22:12] 2025-06-04 18:21:58,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:22:12] 2025-06-04 18:21:59,214 | INFO     | all payload control threads have been joined
[2025-06-04 14:22:12] 2025-06-04 18:21:59,778 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:21:59,782 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:21:59,851 | INFO     | all data control threads have been joined
[2025-06-04 14:22:12] 2025-06-04 18:21:59,854 | INFO     | all job control threads have been joined
[2025-06-04 14:22:12] 2025-06-04 18:22:00,219 | INFO     | [payload] control thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,461 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,524 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,533 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,535 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,718 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,782 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,857 | INFO     | [data] control thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,859 | INFO     | [job] control thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:00,878 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:01,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:22:12] 2025-06-04 18:22:01,094 | INFO     | [job] validate thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:01,108 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:01,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:22:12] 2025-06-04 18:22:02,010 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:05,183 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:22:12] 2025-06-04 18:22:06,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996402206528)>', '<ExcThread(monitor, started 139995901835008)>']
[2025-06-04 14:22:12] 2025-06-04 18:22:06,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:22:12] 2025-06-04 18:22:06,818 | INFO     | [monitor] control thread has ended
[2025-06-04 14:22:12] 2025-06-04 18:22:11,827 | INFO     | all workflow threads have been joined
[2025-06-04 14:22:12] 2025-06-04 18:22:11,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:22:12] 2025-06-04 18:22:11,828 | INFO     | traces error code: 0
[2025-06-04 14:22:12] 2025-06-04 18:22:11,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:22:12] 2025-06-04 18:22:12,051 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:22:12] 2025-06-04 18:22:12,055 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:22:12] 2025-06-04 18:22:12,060 [wrapper] pilotpid: 1618610
[2025-06-04 14:22:12] 2025-06-04 18:22:12,064 [wrapper] Pilot exit status: 0
[2025-06-04 14:22:12] 2025-06-04 18:22:12,087 [wrapper] pandaids: 6679680378
[2025-06-04 14:22:12] 2025-06-04 18:22:12,266 [wrapper] cleanup supervisor_pilot 2143581 1618611
[2025-06-04 14:22:12] 2025-06-04 18:22:12,272 [wrapper] Test setup, not cleaning
[2025-06-04 14:22:12] 2025-06-04 18:22:12,278 [wrapper] apfmon messages muted
[2025-06-04 14:22:12] 2025-06-04 18:22:12,285 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:22:12] 2025-06-04 18:22:12,291 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:22:12]  *** Error codes and diagnostics ***
[2025-06-04 14:22:12]     "exeErrorCode": 0,
[2025-06-04 14:22:12]     "exeErrorDiag": "",
[2025-06-04 14:22:12]     "pilotErrorCode": 0,
[2025-06-04 14:22:12]     "pilotErrorDiag": "",
[2025-06-04 14:22:12]  *** Listing of results directory ***
[2025-06-04 14:22:12] total 381656
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 08:15 queuedata.json
[2025-06-04 14:22:12] -rwx------. 1 boincer umatlas     37140 Jun  4 08:18 runpilot2-wrapper.sh
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 08:18 pilot3.tar.gz
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas       100 Jun  4 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:22:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 11:04 run_atlas
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas       105 Jun  4 11:04 job.xml
[2025-06-04 14:22:12] -rw-r--r--. 2 boincer umatlas 215158309 Jun  4 11:04 EVNT.45006593._001607.pool.root.1
[2025-06-04 14:22:12] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 11:04 shared
[2025-06-04 14:22:12] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 11:04 input.tar.gz
[2025-06-04 14:22:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 11:04 start_atlas.sh
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas         0 Jun  4 11:04 boinc_lockfile
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 11:04 pandaJob.out
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas    986745 Jun  4 11:04 agis_schedconf.cvmfs.json
[2025-06-04 14:22:12] drwx------. 4 boincer umatlas      4096 Jun  4 11:04 pilot3
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas 168962086 Jun  4 14:20 HITS.45006595._056617.pool.root.1
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas       531 Jun  4 14:20 boinc_task_state.xml
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas        95 Jun  4 14:21 pilot_heartbeat.json
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas      1031 Jun  4 14:21 memory_monitor_summary.json
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas   1598969 Jun  4 14:21 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas    389043 Jun  4 14:21 log.45006595._056617.job.log.tgz.1
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas      6859 Jun  4 14:21 init_data.xml
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 14:21 boinc_mmap_file
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas        28 Jun  4 14:21 wrapper_checkpoint.txt
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas      7719 Jun  4 14:21 heartbeat.json
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas      4476 Jun  4 14:22 pilotlog.txt
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas   1046331 Jun  4 14:22 log.45006595._056617.job.log.1
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas       357 Jun  4 14:22 output.list
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas       620 Jun  4 14:22 runtime_log
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas   1454080 Jun  4 14:22 result.tar.gz
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas      8670 Jun  4 14:22 runtime_log.err
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas       655 Jun  4 14:22 4uLODmdF2g7n9Rq4apOajLDm4fhM0noT9bVof3QYDmx2aKDmMZbRPo.diag
[2025-06-04 14:22:12] -rw-r--r--. 1 boincer umatlas     20888 Jun  4 14:22 stderr.txt
[2025-06-04 14:22:12] HITS file was successfully produced:
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas 168962086 Jun  4 14:20 shared/HITS.pool.root.1
[2025-06-04 14:22:12]  *** Contents of shared directory: ***
[2025-06-04 14:22:12] total 377060
[2025-06-04 14:22:12] -rw-r--r--. 2 boincer umatlas 215158309 Jun  4 11:04 ATLAS.root_0
[2025-06-04 14:22:12] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 11:04 input.tar.gz
[2025-06-04 14:22:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 11:04 start_atlas.sh
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas 168962086 Jun  4 14:20 HITS.pool.root.1
[2025-06-04 14:22:12] -rw-------. 1 boincer umatlas   1454080 Jun  4 14:22 result.tar.gz
14:22:13 (1610497): run_atlas exited; CPU time 88471.335181
14:22:13 (1610497): called boinc_finish(0)

</stderr_txt>
]]>

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