Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 17:04:00 (28128): Detected: vboxwrapper 26206
2025-06-04 17:04:00 (28128): Detected: BOINC client v8.0.2
2025-06-04 17:04:01 (28128): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-04 17:04:01 (28128): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 17:04:02 (28128): Create VM. (boinc_546c4389068ba1bf, slot#15)
2025-06-04 17:04:02 (28128): Setting Memory Size for VM. (4300MB)
2025-06-04 17:04:02 (28128): Setting CPU Count for VM. (3)
2025-06-04 17:04:03 (28128): Setting Chipset Options for VM.
2025-06-04 17:04:03 (28128): Setting Graphics Controller Options for VM.
2025-06-04 17:04:03 (28128): Setting Boot Options for VM.
2025-06-04 17:04:03 (28128): Setting Network Configuration for NAT.
2025-06-04 17:04:04 (28128): Enabling VM Network Access.
2025-06-04 17:04:04 (28128): Disabling USB Support for VM.
2025-06-04 17:04:04 (28128): Disabling COM Port Support for VM.
2025-06-04 17:04:05 (28128): Disabling LPT Port Support for VM.
2025-06-04 17:04:05 (28128): Disabling Audio Support for VM.
2025-06-04 17:04:05 (28128): Disabling Clipboard Support for VM.
2025-06-04 17:04:05 (28128): Disabling Drag and Drop Support for VM.
2025-06-04 17:04:06 (28128): Adding storage controller(s) to VM.
2025-06-04 17:04:06 (28128): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 17:04:06 (28128): Adding VirtualBox Guest Additions to VM.
2025-06-04 17:04:07 (28128): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 17:04:07 (28128): forwarding host port 57111 to guest port 80
2025-06-04 17:04:07 (28128): Enabling remote desktop for VM.
2025-06-04 17:04:07 (28128): Required extension pack not installed, remote desktop not enabled.
2025-06-04 17:04:07 (28128): Enabling shared directory for VM.
2025-06-04 17:04:08 (28128): Starting VM using VBoxManage interface. (boinc_546c4389068ba1bf, slot#15)
2025-06-04 17:04:13 (28128): Successfully started VM. (PID = '25952')
2025-06-04 17:04:13 (28128): Reporting VM Process ID to BOINC.
2025-06-04 17:04:13 (28128): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-04 17:04:13 (28128): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 17:04:13 (28128): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 17:04:13 (28128): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 17:04:13 (28128): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 17:04:13 (28128): Detected: Web Application Enabled (http://localhost:57111)
2025-06-04 17:04:13 (28128): Preference change detected
2025-06-04 17:04:13 (28128): Setting CPU throttle for VM. (90%)
2025-06-04 17:04:13 (28128): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 17:04:15 (28128): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 17:04:15 (28128): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 17:04:17 (28128): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 17:04:17 (28128): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 17:04:17 (28128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 17:04:22 (28128): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 17:04:22 (28128): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 17:04:26 (28128): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000078 main     Log opened 2025-06-04T17:04:24.269929000Z
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000181 main     OS Product: Linux
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000199 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000214 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000230 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000230 main     Process ID: 1289
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000230 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 17:04:26 (28128): Guest Log: 00:00:00.000699 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 17:04:26 (28128): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 17:04:26 (28128): Guest Log: [INFO] Mounting shared directory
2025-06-04 17:04:26 (28128): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 17:04:31 (28128): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 17:04:31 (28128): Guest Log: [INFO] Detected branch: prod
2025-06-04 17:04:32 (28128): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 17:04:32 (28128): Guest Log: Copying input files
2025-06-04 17:04:32 (28128): Guest Log: Copied input files into RunAtlas.
2025-06-04 17:04:32 (28128): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 17:04:32 (28128): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 17:04:32 (28128): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 17:04:32 (28128): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 17:04:36 (28128): Guest Log: 00:00:10.004157 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 787 758 000ns (GuestNow=1 749 049 475 483 605 000 ns GuestLast=1 749 056 664 271 363 000 ns fSetTimeLastLoop=true )
2025-06-04 17:04:43 (28128): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 17:04:43 (28128): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 17:04:43 (28128): Guest Log: 2.6.3.0 1563 0 32228 146783 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 17:04:44 (28128): Guest Log: copied the webapp to /var/www
2025-06-04 17:04:44 (28128): Guest Log: ATHENA_PROC_NUMBER=3
2025-06-04 17:04:44 (28128): Guest Log: ATHENA_CORE_NUMBER=3
2025-06-04 17:04:45 (28128): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 17:04:45 (28128): Guest Log:  *** Starting ATLAS job. (PandaID=6679367342 taskID=45006595) ***
2025-06-04 17:51:17 (28128): Preference change detected
2025-06-04 17:51:17 (28128): Setting CPU throttle for VM. (100%)
2025-06-04 17:51:17 (28128): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 18:44:16 (28128): Status Report: Elapsed Time: '6000.000000'
2025-06-04 18:44:16 (28128): Status Report: CPU Time: '3551.640625'
2025-06-04 20:24:19 (28128): Status Report: Elapsed Time: '12000.000000'
2025-06-04 20:24:19 (28128): Status Report: CPU Time: '21472.078125'
2025-06-04 20:30:47 (28128): Guest Log:  *** Job finished ***
2025-06-04 20:30:47 (28128): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:46,834 | INFO     | [job] validate thread has finished
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:46,853 | INFO     | [payload] run_realtimelog thread has finished
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:48,371 | INFO     | [data] queue_monitor thread has finished
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:48,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473458976576)>', '<ExcThread(monitor, started 140472198620928)>']
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:49,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:49,382 | INFO     | [monitor] control thread has ended
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,827 | INFO     | all workflow threads have been joined
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,827 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,827 | INFO     | traces error code: 0
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,899 [wrapper] ==== pilot stdout END ====
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,902 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,905 [wrapper] pilotpid: 6256
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:53,908 [wrapper] Pilot exit status: 0
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:54,811 [wrapper] pandaids: 6679367342
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:54,827 [wrapper] cleanup supervisor_pilot  9748 6257
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:54,829 [wrapper] Test setup, not cleaning
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:54,833 [wrapper] apfmon messages muted
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:54,835 [wrapper] ==== wrapper stdout END ====
2025-06-04 20:30:47 (28128): Guest Log: 2025-06-04 18:30:54,838 [wrapper] ==== wrapper stderr END ====
2025-06-04 20:30:47 (28128): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 20:30:47 (28128): Guest Log:     "exeErrorCode": 0,
2025-06-04 20:30:47 (28128): Guest Log:     "exeErrorDiag": "",
2025-06-04 20:30:47 (28128): Guest Log:     "pilotErrorCode": 0,
2025-06-04 20:30:47 (28128): Guest Log:     "pilotErrorDiag": "",
2025-06-04 20:30:47 (28128): Guest Log:  *** Listing of results directory ***
2025-06-04 20:30:47 (28128): Guest Log: total 172464
2025-06-04 20:30:47 (28128): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 08:46 pilot3.tar.gz
2025-06-04 20:30:47 (28128): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 08:58 queuedata.json
2025-06-04 20:30:47 (28128): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 08:59 runpilot2-wrapper.sh
2025-06-04 20:30:47 (28128): Guest Log: -rwxr-xr-x. 1 atlas atlas      9092 Jun  4 15:04 init_data.xml
2025-06-04 20:30:47 (28128): Guest Log: -rwxr-xr-x. 1 atlas atlas    508892 Jun  4 15:04 input.tar.gz
2025-06-04 20:30:47 (28128): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 15:04 start_atlas.sh
2025-06-04 20:30:47 (28128): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 15:04 EVNT.45006593._001831.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 20:30:47 (28128): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  4 15:04 pandaJob.out
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 15:34 agis_ddmendpoints.agis.ALL.json
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas    990989 Jun  4 15:35 agis_schedconf.cvmfs.json
2025-06-04 20:30:47 (28128): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 15:35 pilot3
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas 170460308 Jun  4 18:30 HITS.45006595._056218.pool.root.1
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas      1025 Jun  4 18:30 memory_monitor_summary.json
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas    287167 Jun  4 18:30 log.45006595._056218.job.log.tgz.1
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 18:30 pilot_heartbeat.json
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas      7679 Jun  4 18:30 heartbeat.json
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas      4722 Jun  4 18:30 pilotlog.txt
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas    900161 Jun  4 18:30 log.45006595._056218.job.log.1
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 18:30 output.list
2025-06-04 20:30:47 (28128): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 18:30 runtime_log
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas   1208320 Jun  4 18:30 result.tar.gz
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas       646 Jun  4 18:30 X4XNDmR9yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNunKDmjOKfln.diag
2025-06-04 20:30:47 (28128): Guest Log: -rw-r--r--. 1 atlas atlas      8556 Jun  4 18:30 runtime_log.err
2025-06-04 20:30:47 (28128): Guest Log: Looking for outputfile HITS.45006595._056218.pool.root.1
2025-06-04 20:30:47 (28128): Guest Log: HITS file was successfully produced
2025-06-04 20:30:47 (28128): Guest Log: -rw-------. 1 atlas atlas 170460308 Jun  4 18:30 /home/atlas/RunAtlas/HITS.45006595._056218.pool.root.1
2025-06-04 20:30:47 (28128): Guest Log: Successfully finished the ATLAS job!
2025-06-04 20:30:47 (28128): Guest Log: Copying the results back to the shared directory!
2025-06-04 20:30:47 (28128): Guest Log:  *** Contents of shared directory: ***
2025-06-04 20:30:47 (28128): Guest Log: total 376848
2025-06-04 20:30:47 (28128): Guest Log: -rwxrwxrwx. 1 root root 213680057 Jun  4 15:04 ATLAS.root_0
2025-06-04 20:30:47 (28128): Guest Log: -rwxrwxrwx. 1 root root 170460308 Jun  4 18:30 HITS.pool.root.1
2025-06-04 20:30:47 (28128): Guest Log: -rwxrwxrwx. 1 root root      9092 Jun  4 15:04 init_data.xml
2025-06-04 20:30:47 (28128): Guest Log: -rwxrwxrwx. 1 root root    508892 Jun  4 15:03 input.tar.gz
2025-06-04 20:30:47 (28128): Guest Log: -rwxrwxrwx. 1 root root   1208320 Jun  4 18:30 result.tar.gz
2025-06-04 20:30:47 (28128): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 15:03 start_atlas.sh
2025-06-04 20:30:47 (28128): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 20:30:47 (28128): VM Completion File Detected.
2025-06-04 20:30:47 (28128): Powering off VM.
2025-06-04 20:30:48 (28128): Successfully stopped VM.
2025-06-04 20:30:48 (28128): Deregistering VM. (boinc_546c4389068ba1bf, slot#15)
2025-06-04 20:30:48 (28128): Removing network bandwidth throttle group from VM.
2025-06-04 20:30:48 (28128): Removing VM from VirtualBox.
20:30:53 (28128): called boinc_finish(0)

</stderr_txt>
]]>

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