Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:50:51 (3532138): wrapper (7.7.26015): starting
07:50:51 (3532138): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 07:50:51] Arguments: --nthreads 12
[2025-06-04 07:50:51] Threads: 12
[2025-06-04 07:50:51] Checking for CVMFS
[2025-06-04 07:50:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:50:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:50:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:50:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:50:52] 2.11.5.0 676980 23775 224412 146783 3 19 39272659 45568000 16143 130560 0 242360214 99.800 142217761 23075 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-04 07:50:52] CVMFS is ok
[2025-06-04 07:50:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:50:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:50:52] Further information can be found at the LHC@home message board.
[2025-06-04 07:50:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:50:52] Checking for apptainer binary...
[2025-06-04 07:50:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:50:52] Running /usr/bin/apptainer --version
[2025-06-04 07:50:52] apptainer version 1.4.0-1.el9
[2025-06-04 07:50:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:50:53] wns0104.triumf.lcg
[2025-06-04 07:50:53] apptainer works
[2025-06-04 07:50:53] Set ATHENA_PROC_NUMBER=12
[2025-06-04 07:50:53] Set ATHENA_CORE_NUMBER=12
[2025-06-04 07:50:53] Starting ATLAS job with PandaID=6679799570
[2025-06-04 07:50:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:54:10]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | found no stored workdir sizes
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | INFO     | will not add max space = 0 B to job metrics
[2025-06-04 07:54:10] 2025-06-04 14:53:56,980 | WARNING  | wrong length of table data, x=[1749048696.0], y=[1504.0] (must be same and length>=4)
[2025-06-04 07:54:10] 2025-06-04 14:53:56,980 | INFO     | ..............................
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . Timing measurements:
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . get job = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . initial setup = 2 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . payload setup = 6 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . stage-in = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . payload execution = 23 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . stage-out = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . log creation = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | ..............................
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6679799570/pilotlog.txt
[2025-06-04 07:54:10] 2025-06-04 14:53:56,995 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-04 07:54:10] - Log from pilotlog.txt -
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | INFO     | extracted standard info from prmon json
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | found no stored workdir sizes
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | INFO     | will not add max space = 0 B to job metrics
[2025-06-04 07:54:10] 2025-06-04 14:53:56,980 | WARNING  | wrong length of table data, x=[1749048696.0], y=[1504.0] (must be same and length>=4)
[2025-06-04 07:54:10] 2025-06-04 14:53:56,980 | INFO     | ..............................
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . Timing measurements:
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . get job = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . initial setup = 2 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . payload setup = 6 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . stage-in = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . payload execution = 23 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . stage-out = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . log creation = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | ..............................
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6679799570/pilotlog.txt
[2025-06-04 07:54:10] 2025-06-04 14:53:56,996 | WARNING  | 
[2025-06-04 07:54:10] [begin log extracts]
[2025-06-04 07:54:10] - Log from pilotlog.txt -
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | INFO     | extracted standard info from prmon json
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:54:10] 2025-06-04 14:53:56,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | WARNING  | found no stored workdir sizes
[2025-06-04 07:54:10] 2025-06-04 14:53:56,978 | INFO     | will not add max space = 0 B to job metrics
[2025-06-04 07:54:10] 2025-06-04 14:53:56,980 | WARNING  | wrong length of table data, x=[1749048696.0], y=[1504.0] (must be same and length>=4)
[2025-06-04 07:54:10] 2025-06-04 14:53:56,980 | INFO     | ..............................
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . Timing measurements:
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . get job = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . initial setup = 2 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . payload setup = 6 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . stage-in = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . payload execution = 23 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . stage-out = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | . log creation = 0 s
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | ..............................
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 07:54:10] 2025-06-04 14:53:56,981 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6679799570/pilotlog.txt
[2025-06-04 07:54:10] [end log extracts]
[2025-06-04 07:54:10] 2025-06-04 14:53:56,996 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-04 07:54:10] 2025-06-04 14:53:56,997 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | 
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | job summary report
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | --------------------------------------------------
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | PanDA job id: 6679799570
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | task id: 45006595
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-04 07:51:46,656 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | pilot state: failed 
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | transexitcode: 65
[2025-06-04 07:54:10] 2025-06-04 14:53:57,482 | INFO     | exeerrorcode: 65
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | exitcode: 65
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | cpuconsumptiontime: 16 s
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | nevents: 0
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | neventsw: 0
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | pid: 3542007
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | pgrp: 3542007
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | corecount: 12
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | event service: False
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | sizes: {0: 2397288, 6: 2397494, 11: 2397522, 33: 2424906, 35: 2424906, 155: 2425048}
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | --------------------------------------------------
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | 
[2025-06-04 07:54:10] 2025-06-04 14:53:57,483 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-04 07:54:10] 2025-06-04 14:53:57,498 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,498 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,498 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,498 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,498 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:54:10] 2025-06-04 14:53:57,499 | INFO     | job 6679799570 has completed (purged errors)
[2025-06-04 07:54:10] 2025-06-04 14:53:57,500 | INFO     | overall cleanup function is called
[2025-06-04 07:54:10] 2025-06-04 14:53:58,506 | INFO     | --- collectZombieJob: --- 10, [3542007]
[2025-06-04 07:54:10] 2025-06-04 14:53:58,506 | INFO     | zombie collector waiting for pid 3542007
[2025-06-04 07:54:10] 2025-06-04 14:53:58,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:54:10] 2025-06-04 14:53:58,506 | INFO     | collected zombie processes
[2025-06-04 07:54:10] 2025-06-04 14:53:58,506 | INFO     | will attempt to kill all subprocesses of pid=3542007
[2025-06-04 07:54:10] 2025-06-04 14:53:58,697 | INFO     | process IDs to be killed: [3542007] (in reverse order)
[2025-06-04 07:54:10] 2025-06-04 14:53:58,768 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:54:10] 2025-06-04 14:53:58,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:54:10] 2025-06-04 14:53:58,777 | INFO     | did not find any defunct processes belonging to 3542007
[2025-06-04 07:54:10] 2025-06-04 14:53:58,785 | INFO     | did not find any defunct processes belonging to 3542007
[2025-06-04 07:54:10] 2025-06-04 14:53:58,785 | INFO     | ready for new job
[2025-06-04 07:54:10] 2025-06-04 14:53:58,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:54:10] 2025-06-04 14:53:58,787 | INFO     | **************************************
[2025-06-04 07:54:10] 2025-06-04 14:53:58,787 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:54:10] 2025-06-04 14:53:58,787 | INFO     | **************************************
[2025-06-04 07:54:10] 2025-06-04 14:53:58,787 | INFO     | 
[2025-06-04 07:54:10] 2025-06-04 14:53:58,789 | INFO     | architecture information:
[2025-06-04 07:54:10] 2025-06-04 14:53:58,789 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:54:10] 2025-06-04 14:53:58,800 | INFO     | cat /etc/os-release:
[2025-06-04 07:54:10] NAME="CentOS Linux"
[2025-06-04 07:54:10] VERSION="7 (Core)"
[2025-06-04 07:54:10] ID="centos"
[2025-06-04 07:54:10] ID_LIKE="rhel fedora"
[2025-06-04 07:54:10] VERSION_ID="7"
[2025-06-04 07:54:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:54:10] ANSI_COLOR="0;31"
[2025-06-04 07:54:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:54:10] HOME_URL="https://www.centos.org/"
[2025-06-04 07:54:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:54:10] 
[2025-06-04 07:54:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:54:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:54:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:54:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:54:10] 
[2025-06-04 07:54:10] 2025-06-04 14:53:58,800 | INFO     | **************************************
[2025-06-04 07:54:10] 2025-06-04 14:53:59,303 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-04 07:54:10] 2025-06-04 14:53:59,315 | INFO     | sufficient remaining disk space (1828338008064 B)
[2025-06-04 07:54:10] 2025-06-04 14:53:59,315 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | INFO     | update_server=False
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:54:10] 2025-06-04 14:53:59,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:54:10] 2025-06-04 14:53:59,698 | INFO     | all data control threads have been joined
[2025-06-04 07:54:10] 2025-06-04 14:53:59,851 | INFO     | all payload control threads have been joined
[2025-06-04 07:54:10] 2025-06-04 14:53:59,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:54:10] 2025-06-04 14:53:59,882 | INFO     | aborting loop
[2025-06-04 07:54:10] 2025-06-04 14:54:00,321 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:00,360 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:00,483 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:00,689 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:54:10] 2025-06-04 14:54:00,704 | INFO     | [data] control thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:00,726 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:00,745 | INFO     | all job control threads have been joined
[2025-06-04 07:54:10] 2025-06-04 14:54:00,857 | INFO     | [payload] control thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:00,888 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:01,173 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:01,305 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:01,320 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:01,322 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:01,530 | INFO     | [job] validate thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:01,678 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:01,750 | INFO     | [job] control thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:02,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:54:10] 2025-06-04 14:54:03,082 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:04,696 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:54:10] 2025-06-04 14:54:04,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140173350422336)>', '<ExcThread(monitor, started 140172825978624)>']
[2025-06-04 07:54:10] 2025-06-04 14:54:05,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:54:10] 2025-06-04 14:54:05,351 | INFO     | [monitor] control thread has ended
[2025-06-04 07:54:10] 2025-06-04 14:54:09,993 | INFO     | all workflow threads have been joined
[2025-06-04 07:54:10] 2025-06-04 14:54:09,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:54:10] 2025-06-04 14:54:09,993 | INFO     | traces error code: 0
[2025-06-04 07:54:10] 2025-06-04 14:54:09,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:54:10] 2025-06-04 14:54:10,119 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:54:10] 2025-06-04 14:54:10,121 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:54:10] 2025-06-04 14:54:10,124 [wrapper] pilotpid: 3535698
[2025-06-04 07:54:10] 2025-06-04 14:54:10,126 [wrapper] Pilot exit status: 0
[2025-06-04 07:54:10] 2025-06-04 14:54:10,135 [wrapper] pandaids: 6679799570
[2025-06-04 07:54:10] 2025-06-04 14:54:10,184 [wrapper] cleanup supervisor_pilot 3535704 3535699
[2025-06-04 07:54:10] 2025-06-04 14:54:10,187 [wrapper] Test setup, not cleaning
[2025-06-04 07:54:10] 2025-06-04 14:54:10,189 [wrapper] apfmon messages muted
[2025-06-04 07:54:10] 2025-06-04 14:54:10,191 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:54:10] 2025-06-04 14:54:10,193 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:54:10]  *** Error codes and diagnostics ***
[2025-06-04 07:54:10]     "exeErrorCode": 65,
[2025-06-04 07:54:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-04 07:54:10]     "pilotErrorCode": 1305,
[2025-06-04 07:54:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-04 07:54:10]  *** Listing of results directory ***
[2025-06-04 07:54:10] total 212356
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc    495897 Jun  4 07:23 pilot3.tar.gz
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:48 queuedata.json
[2025-06-04 07:54:10] -rwx------. 1 boinc boinc     37140 Jun  4 07:50 runpilot2-wrapper.sh
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc       100 Jun  4 07:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:54:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 07:50 run_atlas
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc       105 Jun  4 07:50 job.xml
[2025-06-04 07:54:10] -rw-r--r--. 2 boinc boinc 213430232 Jun  4 07:50 EVNT.45006593._001890.pool.root.1
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc      6600 Jun  4 07:50 init_data.xml
[2025-06-04 07:54:10] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:50 start_atlas.sh
[2025-06-04 07:54:10] drwxrwx--x. 2 boinc boinc      4096 Jun  4 07:50 shared
[2025-06-04 07:54:10] -rw-r--r--. 2 boinc boinc    508890 Jun  4 07:50 input.tar.gz
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc         0 Jun  4 07:50 boinc_lockfile
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc      2524 Jun  4 07:50 pandaJob.out
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc    987207 Jun  4 07:51 agis_schedconf.cvmfs.json
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc   1598969 Jun  4 07:51 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:54:10] drwx------. 4 boinc boinc      4096 Jun  4 07:51 pilot3
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc       965 Jun  4 07:51 memory_monitor_summary.json
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc       522 Jun  4 07:51 boinc_task_state.xml
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc     20711 Jun  4 07:51 log.45006595._056738.job.log.tgz.1
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc        95 Jun  4 07:53 pilot_heartbeat.json
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc      8299 Jun  4 07:53 heartbeat.json
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc      8192 Jun  4 07:54 boinc_mmap_file
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc        22 Jun  4 07:54 wrapper_checkpoint.txt
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc      4475 Jun  4 07:54 pilotlog.txt
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc     73541 Jun  4 07:54 log.45006595._056738.job.log.1
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc       188 Jun  4 07:54 output.list
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc       620 Jun  4 07:54 runtime_log
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc    112640 Jun  4 07:54 result.tar.gz
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc       647 Jun  4 07:54 wf8MDmic4g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmI0nKDmxLU9zn.diag
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc      8484 Jun  4 07:54 runtime_log.err
[2025-06-04 07:54:10] -rw-r--r--. 1 boinc boinc     21470 Jun  4 07:54 stderr.txt
[2025-06-04 07:54:10] No HITS result produced
[2025-06-04 07:54:10]  *** Contents of shared directory: ***
[2025-06-04 07:54:10] total 209060
[2025-06-04 07:54:10] -rw-r--r--. 2 boinc boinc 213430232 Jun  4 07:50 ATLAS.root_0
[2025-06-04 07:54:10] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:50 start_atlas.sh
[2025-06-04 07:54:10] -rw-r--r--. 2 boinc boinc    508890 Jun  4 07:50 input.tar.gz
[2025-06-04 07:54:10] -rw-------. 1 boinc boinc    112640 Jun  4 07:54 result.tar.gz
07:54:12 (3532138): run_atlas exited; CPU time 21.176078
07:54:12 (3532138): called boinc_finish(0)

</stderr_txt>
]]>

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