Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:31:35 (1381786): wrapper (7.7.26015): starting
10:31:35 (1381786): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 10:31:35] Arguments: --nthreads 10
[2025-06-04 10:31:35] Threads: 10
[2025-06-04 10:31:35] Checking for CVMFS
[2025-06-04 10:31:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:31:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:31:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:31:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:31:35] 2.12.6.0 9586 1460 183568 146781 1 406 28808949 32935936 14994 16776704 0 6388118 99.602 5144691 32930 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 10:31:35] CVMFS is ok
[2025-06-04 10:31:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:31:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:31:35] Further information can be found at the LHC@home message board.
[2025-06-04 10:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:31:35] Checking for apptainer binary...
[2025-06-04 10:31:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:31:35] Running /usr/bin/apptainer --version
[2025-06-04 10:31:35] apptainer version 1.4.1-1.el9
[2025-06-04 10:31:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:31:35] c-8-36.aglt2.org
[2025-06-04 10:31:35] apptainer works
[2025-06-04 10:31:35] Set ATHENA_PROC_NUMBER=10
[2025-06-04 10:31:35] Set ATHENA_CORE_NUMBER=10
[2025-06-04 10:31:35] Starting ATLAS job with PandaID=6679767906
[2025-06-04 10:31:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:22:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:22:49] 2025-06-04 16:22:37,988 | INFO     | -- intersect: -144597650763.39285
[2025-06-04 12:22:49] 2025-06-04 16:22:37,988 | INFO     | intersect: -144597650763.39285
[2025-06-04 12:22:49] 2025-06-04 16:22:37,988 | INFO     | chi2: 3.5533898198798446
[2025-06-04 12:22:49] 2025-06-04 16:22:37,988 | INFO     | sum of square deviations: 348788620.1153839
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | sum of deviations: 32693212027.057705
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | mean x: 1749050672.6346154
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | mean y: 2232992.8173076925
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | -- intersect: -163942578244.41507
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | intersect: -163942578244.41507
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | chi2: 3.530187085036793
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | current chi2=3.530187085036793 (change=0.6529746529142775 %)
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | right removable region: 103
[2025-06-04 12:22:49] 2025-06-04 16:22:37,989 | INFO     | sum of square deviations: 348780080.1153839
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | sum of deviations: 11271173718.634615
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | mean x: 1749050977.6346154
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | mean y: 2297416.9903846155
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | -- intersect: -56520017174.90285
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | intersect: -56520017174.90285
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | chi2: 1.39408095623114
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | current chi2=1.39408095623114 (change=60.76757612036273 %)
[2025-06-04 12:22:49] 2025-06-04 16:22:37,990 | INFO     | sum of square deviations: 300849330.0202012
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | sum of deviations: -6015939178.979797
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | mean x: 1749051130.1414142
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | mean y: 2352360.1414141413
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | -- intersect: 34977285557.26733
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | intersect: 34977285557.26733
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | chi2: 0.1104741479620035
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | current chi2=0.1104741479620035 (change=92.07548546817056 %)
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | sum of square deviations: 257523317.41489398
[2025-06-04 12:22:49] 2025-06-04 16:22:37,991 | INFO     | sum of deviations: -7602011593.946808
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | mean x: 1749051282.6489363
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | mean y: 2357696.0319148935
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | -- intersect: 51633830381.9913
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | intersect: 51633830381.9913
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | chi2: 0.04878205095909922
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | current chi2=0.04878205095909922 (change=55.84301679712675 %)
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | sum of square deviations: 218580946.38202274
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | sum of deviations: -6856948075.11236
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | mean x: 1749051435.1348314
[2025-06-04 12:22:49] 2025-06-04 16:22:37,992 | INFO     | mean y: 2354782.842696629
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | -- intersect: 54870608717.74594
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | intersect: 54870608717.74594
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | chi2: 0.047742774864134224
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | current chi2=0.047742774864134224 (change=2.130447725201966 %)
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | left removable region: 40
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | sum of square deviations: 77518196.98412687
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | sum of deviations: -870062885.0
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | mean x: 1749051862.1269841
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | mean y: 2330190.0
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | -- intersect: 19633657650.937164
[2025-06-04 12:22:49] 2025-06-04 16:22:37,993 | INFO     | intersect: 19633657650.937164
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | chi2: 0.029250031958438314
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | -- intersect: 19633657650.937164
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | current memory leak: -11.22 B/s (using 63 data points, chi2=0.03)
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | ..............................
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | . Timing measurements:
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | . get job = 0 s
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | . initial setup = 2 s
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | . payload setup = 6 s
[2025-06-04 12:22:49] 2025-06-04 16:22:37,994 | INFO     | . stage-in = 0 s
[2025-06-04 12:22:49] 2025-06-04 16:22:37,995 | INFO     | . payload execution = 6624 s
[2025-06-04 12:22:49] 2025-06-04 16:22:37,995 | INFO     | . stage-out = 1 s
[2025-06-04 12:22:49] 2025-06-04 16:22:37,995 | INFO     | . log creation = 0 s
[2025-06-04 12:22:49] 2025-06-04 16:22:37,995 | INFO     | ..............................
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | 
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | job summary report
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | --------------------------------------------------
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | PanDA job id: 6679767906
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | task id: 45006595
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | errors: (none)
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | pilot state: finished 
[2025-06-04 12:22:49] 2025-06-04 16:22:38,053 | INFO     | transexitcode: 0
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | exeerrorcode: 0
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | exeerrordiag: 
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | exitcode: 0
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | exitmsg: OK
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | cpuconsumptiontime: 43432 s
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | nevents: 400
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | neventsw: 0
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | pid: 1403246
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | pgrp: 1403246
[2025-06-04 12:22:49] 2025-06-04 16:22:38,054 | INFO     | corecount: 10
[2025-06-04 12:22:49] 2025-06-04 16:22:38,055 | INFO     | event service: False
[2025-06-04 12:22:49] 2025-06-04 16:22:38,055 | INFO     | sizes: {0: 2397241, 4: 2397447, 11: 2397475, 6630: 2424543, 6631: 2424542, 6632: 2433567, 6633: 2433751, 6637: 2433921}
[2025-06-04 12:22:49] 2025-06-04 16:22:38,055 | INFO     | --------------------------------------------------
[2025-06-04 12:22:49] 2025-06-04 16:22:38,055 | INFO     | 
[2025-06-04 12:22:49] 2025-06-04 16:22:38,055 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 12:22:49] 2025-06-04 16:22:38,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,071 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,071 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,071 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,071 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,071 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,073 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:22:49] 2025-06-04 16:22:38,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,073 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:22:49] 2025-06-04 16:22:38,073 | INFO     | job 6679767906 has completed (purged errors)
[2025-06-04 12:22:49] 2025-06-04 16:22:38,073 | INFO     | overall cleanup function is called
[2025-06-04 12:22:49] 2025-06-04 16:22:39,081 | INFO     | --- collectZombieJob: --- 10, [1403246]
[2025-06-04 12:22:49] 2025-06-04 16:22:39,081 | INFO     | zombie collector waiting for pid 1403246
[2025-06-04 12:22:49] 2025-06-04 16:22:39,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:22:49] 2025-06-04 16:22:39,081 | INFO     | collected zombie processes
[2025-06-04 12:22:49] 2025-06-04 16:22:39,081 | INFO     | will attempt to kill all subprocesses of pid=1403246
[2025-06-04 12:22:49] 2025-06-04 16:22:39,415 | INFO     | process IDs to be killed: [1403246] (in reverse order)
[2025-06-04 12:22:49] 2025-06-04 16:22:39,518 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:22:49] 2025-06-04 16:22:39,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:22:49] 2025-06-04 16:22:39,531 | INFO     | did not find any defunct processes belonging to 1403246
[2025-06-04 12:22:49] 2025-06-04 16:22:39,544 | INFO     | did not find any defunct processes belonging to 1403246
[2025-06-04 12:22:49] 2025-06-04 16:22:39,545 | INFO     | ready for new job
[2025-06-04 12:22:49] 2025-06-04 16:22:39,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:22:49] 2025-06-04 16:22:39,546 | INFO     | **************************************
[2025-06-04 12:22:49] 2025-06-04 16:22:39,547 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:22:49] 2025-06-04 16:22:39,547 | INFO     | **************************************
[2025-06-04 12:22:49] 2025-06-04 16:22:39,547 | INFO     | 
[2025-06-04 12:22:49] 2025-06-04 16:22:39,560 | INFO     | architecture information:
[2025-06-04 12:22:49] 2025-06-04 16:22:39,561 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:22:49] 2025-06-04 16:22:39,579 | INFO     | cat /etc/os-release:
[2025-06-04 12:22:49] NAME="CentOS Linux"
[2025-06-04 12:22:49] VERSION="7 (Core)"
[2025-06-04 12:22:49] ID="centos"
[2025-06-04 12:22:49] ID_LIKE="rhel fedora"
[2025-06-04 12:22:49] VERSION_ID="7"
[2025-06-04 12:22:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:22:49] ANSI_COLOR="0;31"
[2025-06-04 12:22:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:22:49] HOME_URL="https://www.centos.org/"
[2025-06-04 12:22:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:22:49] 
[2025-06-04 12:22:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:22:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:22:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:22:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:22:49] 
[2025-06-04 12:22:49] 2025-06-04 16:22:39,580 | INFO     | **************************************
[2025-06-04 12:22:49] 2025-06-04 16:22:40,083 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 12:22:49] 2025-06-04 16:22:40,101 | INFO     | sufficient remaining disk space (76589039616 B)
[2025-06-04 12:22:49] 2025-06-04 16:22:40,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:22:49] 2025-06-04 16:22:40,102 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:22:49] 2025-06-04 16:22:40,102 | INFO     | update_server=False
[2025-06-04 12:22:49] 2025-06-04 16:22:40,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:22:49] 2025-06-04 16:22:40,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:22:49] 2025-06-04 16:22:40,211 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 12:22:49] 2025-06-04 16:22:40,211 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 12:22:49] 2025-06-04 16:22:40,212 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:22:49] 2025-06-04 16:22:40,212 | INFO     | will abort loop
[2025-06-04 12:22:49] 2025-06-04 16:22:40,273 | INFO     | all payload control threads have been joined
[2025-06-04 12:22:49] 2025-06-04 16:22:40,784 | INFO     | PID=1385381 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 12:22:49] 2025-06-04 16:22:40,785 | INFO     | .. there are 18 such processes running
[2025-06-04 12:22:49] 2025-06-04 16:22:40,785 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:22:49] 2025-06-04 16:22:40,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:22:49] 2025-06-04 16:22:40,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:22:49] 2025-06-04 16:22:41,009 | INFO     | all job control threads have been joined
[2025-06-04 12:22:49] 2025-06-04 16:22:41,099 | INFO     | all data control threads have been joined
[2025-06-04 12:22:49] 2025-06-04 16:22:41,107 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:41,217 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:41,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:22:49] 2025-06-04 16:22:41,278 | INFO     | [payload] control thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:41,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:41,669 | INFO     | [job] validate thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:41,725 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:41,819 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:42,014 | INFO     | [job] control thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:42,104 | INFO     | [data] control thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:42,176 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:42,247 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:42,453 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:42,536 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:43,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:22:49] 2025-06-04 16:22:43,239 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:44,070 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:44,108 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:22:49] 2025-06-04 16:22:44,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630401722176)>', '<ExcThread(monitor, started 140629770233600)>']
[2025-06-04 12:22:49] 2025-06-04 16:22:44,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:22:49] 2025-06-04 16:22:44,806 | INFO     | [monitor] control thread has ended
[2025-06-04 12:22:49] 2025-06-04 16:22:49,443 | INFO     | all workflow threads have been joined
[2025-06-04 12:22:49] 2025-06-04 16:22:49,444 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:22:49] 2025-06-04 16:22:49,444 | INFO     | traces error code: 0
[2025-06-04 12:22:49] 2025-06-04 16:22:49,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:22:49] 2025-06-04 16:22:49,637 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:22:49] 2025-06-04 16:22:49,640 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:22:49] 2025-06-04 16:22:49,643 [wrapper] pilotpid: 1385381
[2025-06-04 12:22:49] 2025-06-04 16:22:49,646 [wrapper] Pilot exit status: 0
[2025-06-04 12:22:49] 2025-06-04 16:22:49,656 [wrapper] pandaids: 6679767906
[2025-06-04 12:22:49] 2025-06-04 16:22:49,721 [wrapper] cleanup supervisor_pilot 1973913 1385382
[2025-06-04 12:22:49] 2025-06-04 16:22:49,724 [wrapper] Test setup, not cleaning
[2025-06-04 12:22:49] 2025-06-04 16:22:49,728 [wrapper] apfmon messages muted
[2025-06-04 12:22:49] 2025-06-04 16:22:49,730 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:22:49] 2025-06-04 16:22:49,733 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:22:49]  *** Error codes and diagnostics ***
[2025-06-04 12:22:49]     "exeErrorCode": 0,
[2025-06-04 12:22:49]     "exeErrorDiag": "",
[2025-06-04 12:22:49]     "pilotErrorCode": 0,
[2025-06-04 12:22:49]     "pilotErrorDiag": "",
[2025-06-04 12:22:49]  *** Listing of results directory ***
[2025-06-04 12:22:49] total 389920
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 09:47 pilot3.tar.gz
[2025-06-04 12:22:49] -rwx------. 1 boincer umatlas     37140 Jun  4 10:06 runpilot2-wrapper.sh
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 10:06 queuedata.json
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas       100 Jun  4 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:22:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 10:31 run_atlas
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas       105 Jun  4 10:31 job.xml
[2025-06-04 12:22:49] -rw-r--r--. 2 boincer umatlas 213800995 Jun  4 10:31 EVNT.45006593._002157.pool.root.1
[2025-06-04 12:22:49] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 10:31 input.tar.gz
[2025-06-04 12:22:49] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:31 start_atlas.sh
[2025-06-04 12:22:49] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 10:31 shared
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas         0 Jun  4 10:31 boinc_lockfile
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 10:31 pandaJob.out
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas    986819 Jun  4 10:31 agis_schedconf.cvmfs.json
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas   1598969 Jun  4 10:31 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:22:49] drwx------. 4 boincer umatlas      4096 Jun  4 10:31 pilot3
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas      6658 Jun  4 12:18 init_data.xml
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas        95 Jun  4 12:21 pilot_heartbeat.json
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas 179697763 Jun  4 12:22 HITS.45006595._056693.pool.root.1
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas       529 Jun  4 12:22 boinc_task_state.xml
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas      1043 Jun  4 12:22 memory_monitor_summary.json
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas    366303 Jun  4 12:22 log.45006595._056693.job.log.tgz.1
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas      7722 Jun  4 12:22 heartbeat.json
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 12:22 boinc_mmap_file
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas        27 Jun  4 12:22 wrapper_checkpoint.txt
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas      4935 Jun  4 12:22 pilotlog.txt
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas    607049 Jun  4 12:22 log.45006595._056693.job.log.1
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas       357 Jun  4 12:22 output.list
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas       620 Jun  4 12:22 runtime_log
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas    993280 Jun  4 12:22 result.tar.gz
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas      8651 Jun  4 12:22 runtime_log.err
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas       651 Jun  4 12:22 GrGKDmXw3g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcznKDm9xp9Wm.diag
[2025-06-04 12:22:49] -rw-r--r--. 1 boincer umatlas     20972 Jun  4 12:22 stderr.txt
[2025-06-04 12:22:49] HITS file was successfully produced:
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas 179697763 Jun  4 12:22 shared/HITS.pool.root.1
[2025-06-04 12:22:49]  *** Contents of shared directory: ***
[2025-06-04 12:22:49] total 385772
[2025-06-04 12:22:49] -rw-r--r--. 2 boincer umatlas 213800995 Jun  4 10:31 ATLAS.root_0
[2025-06-04 12:22:49] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 10:31 input.tar.gz
[2025-06-04 12:22:49] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:31 start_atlas.sh
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas 179697763 Jun  4 12:22 HITS.pool.root.1
[2025-06-04 12:22:49] -rw-------. 1 boincer umatlas    993280 Jun  4 12:22 result.tar.gz
12:22:51 (1381786): run_atlas exited; CPU time 43669.483252
12:22:51 (1381786): called boinc_finish(0)

</stderr_txt>
]]>

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