Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:45:05 (2930026): wrapper (7.7.26015): starting
03:45:05 (2930026): wrapper: running run_atlas (--nthreads 6)
[2025-06-05 03:45:05] Arguments: --nthreads 6
[2025-06-05 03:45:05] Threads: 6
[2025-06-05 03:45:05] Checking for CVMFS
[2025-06-05 03:45:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 03:45:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 03:45:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 03:45:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 03:45:06] 2.11.5.0 1253570 2847 87764 146791 3 56 14892218 20971521 929 130560 0 4616186 99.996 681874 90 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-05 03:45:06] CVMFS is ok
[2025-06-05 03:45:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 03:45:06] Checking for apptainer binary...
[2025-06-05 03:45:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 03:45:06] Running /usr/bin/apptainer --version
[2025-06-05 03:45:06] apptainer version 1.3.6-1.el9
[2025-06-05 03:45:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 03:45:06] testio006
[2025-06-05 03:45:06] apptainer works
[2025-06-05 03:45:06] Set ATHENA_PROC_NUMBER=6
[2025-06-05 03:45:06] Set ATHENA_CORE_NUMBER=6
[2025-06-05 03:45:06] Starting ATLAS job with PandaID=6679706743
[2025-06-05 03:45:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 05:10:49]  *** The last 200 lines of the pilot log: ***
[2025-06-05 05:10:49] 2025-06-04 20:09:36,297 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:38,800 | INFO     | monitor loop #384: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:38,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:41,303 | INFO     | monitor loop #385: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:41,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:43,806 | INFO     | monitor loop #386: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:43,806 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:46,309 | INFO     | monitor loop #387: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:46,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:48,812 | INFO     | monitor loop #388: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:48,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:51,315 | INFO     | monitor loop #389: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:51,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:53,818 | INFO     | monitor loop #390: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:53,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:56,321 | INFO     | monitor loop #391: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:56,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:09:56,687 | INFO     | PID=2933718 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 05:10:49] 2025-06-04 20:09:56,687 | INFO     | .. there are 2 such processes running
[2025-06-05 05:10:49] 2025-06-04 20:09:58,824 | INFO     | monitor loop #392: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:09:58,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:01,327 | INFO     | monitor loop #393: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:10:01,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:01,699 | INFO     | 5089s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 05:10:49] 2025-06-04 20:10:03,830 | INFO     | monitor loop #394: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:10:03,830 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:06,333 | INFO     | monitor loop #395: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:10:06,333 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:08,836 | INFO     | monitor loop #396: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:10:08,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:11,339 | INFO     | monitor loop #397: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:10:11,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:13,842 | INFO     | monitor loop #398: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:10:13,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:16,345 | INFO     | monitor loop #399: job 0:6679706743 is in state 'finished'
[2025-06-05 05:10:49] 2025-06-04 20:10:16,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:10:49] 2025-06-04 20:10:17,166 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 05:10:49] 2025-06-04 20:10:17,168 | INFO     | found 8 cores (8 cores per socket, 1 sockets) HT, CPU MHz: 3974.9223124999994
[2025-06-05 05:10:49] 2025-06-04 20:10:17,171 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6679706743/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 05:10:49] 2025-06-04 20:10:17,171 | INFO     | extracted standard info from prmon json
[2025-06-05 05:10:49] 2025-06-04 20:10:17,171 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 05:10:49] 2025-06-04 20:10:17,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 05:10:49] 2025-06-04 20:10:17,171 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 05:10:49] 2025-06-04 20:10:17,171 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 05:10:49] 2025-06-04 20:10:17,172 | INFO     | fitting pss+swap vs Time
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | sum of square deviations: 130793150.0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | sum of deviations: 7658669682.0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | mean x: 1749065301.0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | mean y: 2411244.1066666665
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | -- intersect: -102415134266.54816
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | intersect: -102415134266.54816
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | chi2: 1.0127559280253602
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | -- intersect: -102415134266.54816
[2025-06-05 05:10:49] 2025-06-04 20:10:17,173 | INFO     | current memory leak: 58.56 B/s (using 75 data points, chi2=1.01)
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | could have reported an average CPU frequency of 3951 MHz (6 samples)
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | ..............................
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . Timing measurements:
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . get job = 0 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . initial setup = 4 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . payload setup = 4 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . stage-in = 0 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . payload execution = 4998 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . stage-out = 0 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | . log creation = 0 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,174 | INFO     | ..............................
[2025-06-05 05:10:49] 2025-06-04 20:10:17,237 | INFO     | 
[2025-06-05 05:10:49] 2025-06-04 20:10:17,237 | INFO     | job summary report
[2025-06-05 05:10:49] 2025-06-04 20:10:17,237 | INFO     | --------------------------------------------------
[2025-06-05 05:10:49] 2025-06-04 20:10:17,237 | INFO     | PanDA job id: 6679706743
[2025-06-05 05:10:49] 2025-06-04 20:10:17,237 | INFO     | task id: 45006595
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | errors: (none)
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | pilot state: finished 
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | transexitcode: 0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | exeerrorcode: 0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | exeerrordiag: 
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | exitcode: 0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | exitmsg: OK
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | cpuconsumptiontime: 25434 s
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | nevents: 400
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | neventsw: 0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | pid: 2940239
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | pgrp: 2940239
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | corecount: 6
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | event service: False
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | sizes: {0: 2397632, 3: 2397894, 11: 2397922, 5006: 2424254, 5007: 2433195, 5008: 2433251, 5086: 2433573}
[2025-06-05 05:10:49] 2025-06-04 20:10:17,238 | INFO     | --------------------------------------------------
[2025-06-05 05:10:49] 2025-06-04 20:10:17,239 | INFO     | 
[2025-06-05 05:10:49] 2025-06-04 20:10:17,239 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-05 05:10:49] 2025-06-04 20:10:17,255 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,255 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,255 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,255 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,255 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,256 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 05:10:49] 2025-06-04 20:10:17,257 | INFO     | job 6679706743 has completed (purged errors)
[2025-06-05 05:10:49] 2025-06-04 20:10:17,257 | INFO     | overall cleanup function is called
[2025-06-05 05:10:49] 2025-06-04 20:10:18,263 | INFO     | --- collectZombieJob: --- 10, [2940239]
[2025-06-05 05:10:49] 2025-06-04 20:10:18,263 | INFO     | zombie collector waiting for pid 2940239
[2025-06-05 05:10:49] 2025-06-04 20:10:18,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 05:10:49] 2025-06-04 20:10:18,263 | INFO     | collected zombie processes
[2025-06-05 05:10:49] 2025-06-04 20:10:18,263 | INFO     | will attempt to kill all subprocesses of pid=2940239
[2025-06-05 05:10:49] 2025-06-04 20:10:18,348 | INFO     | process IDs to be killed: [2940239] (in reverse order)
[2025-06-05 05:10:49] 2025-06-04 20:10:18,385 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 05:10:49] 2025-06-04 20:10:18,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 05:10:49] 2025-06-04 20:10:18,388 | INFO     | did not find any defunct processes belonging to 2940239
[2025-06-05 05:10:49] 2025-06-04 20:10:18,390 | INFO     | did not find any defunct processes belonging to 2940239
[2025-06-05 05:10:49] 2025-06-04 20:10:18,391 | INFO     | ready for new job
[2025-06-05 05:10:49] 2025-06-04 20:10:18,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 05:10:49] 2025-06-04 20:10:18,391 | INFO     | ***************************************
[2025-06-05 05:10:49] 2025-06-04 20:10:18,392 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-05 05:10:49] 2025-06-04 20:10:18,392 | INFO     | ***************************************
[2025-06-05 05:10:49] 2025-06-04 20:10:18,392 | INFO     | 
[2025-06-05 05:10:49] 2025-06-04 20:10:18,392 | INFO     | architecture information:
[2025-06-05 05:10:49] 2025-06-04 20:10:18,393 | INFO     | executing command: cat /etc/os-release
[2025-06-05 05:10:49] 2025-06-04 20:10:18,402 | INFO     | cat /etc/os-release:
[2025-06-05 05:10:49] NAME="CentOS Linux"
[2025-06-05 05:10:49] VERSION="7 (Core)"
[2025-06-05 05:10:49] ID="centos"
[2025-06-05 05:10:49] ID_LIKE="rhel fedora"
[2025-06-05 05:10:49] VERSION_ID="7"
[2025-06-05 05:10:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 05:10:49] ANSI_COLOR="0;31"
[2025-06-05 05:10:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 05:10:49] HOME_URL="https://www.centos.org/"
[2025-06-05 05:10:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 05:10:49] 
[2025-06-05 05:10:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 05:10:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 05:10:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 05:10:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 05:10:49] 
[2025-06-05 05:10:49] 2025-06-04 20:10:18,402 | INFO     | ***************************************
[2025-06-05 05:10:49] 2025-06-04 20:10:18,905 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-05 05:10:49] 2025-06-04 20:10:18,918 | INFO     | sufficient remaining disk space (83934314496 B)
[2025-06-05 05:10:49] 2025-06-04 20:10:18,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 05:10:49] 2025-06-04 20:10:18,918 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 05:10:49] 2025-06-04 20:10:18,918 | INFO     | update_server=False
[2025-06-05 05:10:49] 2025-06-04 20:10:18,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 05:10:49] 2025-06-04 20:10:18,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 05:10:49] 2025-06-04 20:10:18,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:10:49] 2025-06-04 20:10:19,597 | INFO     | all data control threads have been joined
[2025-06-05 05:10:49] 2025-06-04 20:10:19,713 | INFO     | all job control threads have been joined
[2025-06-05 05:10:49] 2025-06-04 20:10:19,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:10:49] 2025-06-04 20:10:19,853 | INFO     | aborting loop
[2025-06-05 05:10:49] 2025-06-04 20:10:19,924 | INFO     | [job] retrieve thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:19,924 | INFO     | [job] queue monitor thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:20,320 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:20,415 | INFO     | all payload control threads have been joined
[2025-06-05 05:10:49] 2025-06-04 20:10:20,603 | INFO     | [data] control thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:20,714 | INFO     | [job] control thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:20,858 | INFO     | [job] job monitor thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:20,924 | INFO     | [data] copytool_out thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:20,956 | INFO     | [job] validate thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:21,124 | INFO     | [payload] validate_post thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:21,129 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:21,247 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:21,294 | INFO     | [data] copytool_in thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:21,361 | INFO     | [payload] failed_post thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:21,420 | INFO     | [payload] control thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:22,196 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 05:10:49] 2025-06-04 20:10:26,201 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:29,951 | INFO     | job.realtimelogging is not enabled
[2025-06-05 05:10:49] 2025-06-04 20:10:30,956 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 05:10:49] 2025-06-04 20:10:32,536 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140138651756352)>', '<ExcThread(monitor, started 140138298451712)>']
[2025-06-05 05:10:49] 2025-06-04 20:10:37,561 | INFO     | all workflow threads have been joined
[2025-06-05 05:10:49] 2025-06-04 20:10:37,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 05:10:49] 2025-06-04 20:10:37,561 | INFO     | traces error code: 0
[2025-06-05 05:10:49] 2025-06-04 20:10:37,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 05:10:49] 2025-06-04 20:10:48,919 | INFO     | PID=2933718 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 05:10:49] 2025-06-04 20:10:48,919 | INFO     | .. there are 2 such processes running
[2025-06-05 05:10:49] 2025-06-04 20:10:48,919 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 05:10:49] 2025-06-04 20:10:48,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 05:10:49] 2025-06-04 20:10:48,920 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 05:10:49] 2025-06-04 20:10:48,920 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 05:10:49] 2025-06-04 20:10:48,920 | INFO     | [monitor] control thread has ended
[2025-06-05 05:10:49] 2025-06-04 20:10:49,015 [wrapper] ==== pilot stdout END ====
[2025-06-05 05:10:49] 2025-06-04 20:10:49,017 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 05:10:49] 2025-06-04 20:10:49,019 [wrapper] pilotpid: 2933718
[2025-06-05 05:10:49] 2025-06-04 20:10:49,022 [wrapper] Pilot exit status: 0
[2025-06-05 05:10:49] 2025-06-04 20:10:49,030 [wrapper] pandaids: 6679706743
[2025-06-05 05:10:49] 2025-06-04 20:10:49,056 [wrapper] cleanup supervisor_pilot 2976061 2933719
[2025-06-05 05:10:49] 2025-06-04 20:10:49,059 [wrapper] Test setup, not cleaning
[2025-06-05 05:10:49] 2025-06-04 20:10:49,061 [wrapper] apfmon messages muted
[2025-06-05 05:10:49] 2025-06-04 20:10:49,063 [wrapper] ==== wrapper stdout END ====
[2025-06-05 05:10:49] 2025-06-04 20:10:49,064 [wrapper] ==== wrapper stderr END ====
[2025-06-05 05:10:49]  *** Error codes and diagnostics ***
[2025-06-05 05:10:49]     "exeErrorCode": 0,
[2025-06-05 05:10:49]     "exeErrorDiag": "",
[2025-06-05 05:10:49]     "pilotErrorCode": 0,
[2025-06-05 05:10:49]     "pilotErrorDiag": "",
[2025-06-05 05:10:49]  *** Listing of results directory ***
[2025-06-05 05:10:49] total 387180
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc    549845 Jun  2 18:40 pilot3.tar.gz
[2025-06-05 05:10:49] -rwx------. 1 boinc boinc     37140 Jun  4 21:59 runpilot2-wrapper.sh
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc      5111 Jun  4 21:59 queuedata.json
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc       100 Jun  5 03:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 05:10:49] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 03:45 run_atlas
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc       105 Jun  5 03:45 job.xml
[2025-06-05 05:10:49] -rw-r--r--. 2 boinc boinc 214282850 Jun  5 03:45 EVNT.45006593._002025.pool.root.1
[2025-06-05 05:10:49] -rw-r--r--. 2 boinc boinc     15093 Jun  5 03:45 start_atlas.sh
[2025-06-05 05:10:49] drwxrwx--x. 2 boinc boinc        68 Jun  5 03:45 shared
[2025-06-05 05:10:49] -rw-r--r--. 2 boinc boinc    564115 Jun  5 03:45 input.tar.gz
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc         0 Jun  5 03:45 boinc_lockfile
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc      2524 Jun  5 03:45 pandaJob.out
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc    990984 Jun  5 03:45 agis_schedconf.cvmfs.json
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc   1598969 Jun  5 03:45 agis_ddmendpoints.agis.ALL.json
[2025-06-05 05:10:49] drwx------. 6 boinc boinc      4096 Jun  5 03:45 pilot3
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc      9471 Jun  5 04:36 init_data.xml
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc 176678295 Jun  5 05:08 HITS.45006595._056643.pool.root.1
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc      1014 Jun  5 05:08 memory_monitor_summary.json
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc    290443 Jun  5 05:08 log.45006595._056643.job.log.tgz.1
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc       530 Jun  5 05:09 boinc_task_state.xml
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc        95 Jun  5 05:09 pilot_heartbeat.json
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc      7681 Jun  5 05:10 heartbeat.json
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc      8192 Jun  5 05:10 boinc_mmap_file
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc        27 Jun  5 05:10 wrapper_checkpoint.txt
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc       822 Jun  5 05:10 pilotlog.txt
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc    502293 Jun  5 05:10 log.45006595._056643.job.log.1
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc       357 Jun  5 05:10 output.list
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc       620 Jun  5 05:10 runtime_log
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc    808960 Jun  5 05:10 result.tar.gz
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc      8617 Jun  5 05:10 runtime_log.err
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc       642 Jun  5 05:10 DTfLDm7s2g7n9Rq4apOajLDm4fhM0noT9bVof3QYDm62aKDmmof32n.diag
[2025-06-05 05:10:49] -rw-r--r--. 1 boinc boinc     22103 Jun  5 05:10 stderr.txt
[2025-06-05 05:10:49] HITS file was successfully produced:
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc 176678295 Jun  5 05:08 shared/HITS.pool.root.1
[2025-06-05 05:10:49]  *** Contents of shared directory: ***
[2025-06-05 05:10:49] total 383164
[2025-06-05 05:10:49] -rw-r--r--. 2 boinc boinc 214282850 Jun  5 03:45 ATLAS.root_0
[2025-06-05 05:10:49] -rw-r--r--. 2 boinc boinc     15093 Jun  5 03:45 start_atlas.sh
[2025-06-05 05:10:49] -rw-r--r--. 2 boinc boinc    564115 Jun  5 03:45 input.tar.gz
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc 176678295 Jun  5 05:08 HITS.pool.root.1
[2025-06-05 05:10:49] -rw-------. 1 boinc boinc    808960 Jun  5 05:10 result.tar.gz
05:10:50 (2930026): run_atlas exited; CPU time 25476.308854
05:10:50 (2930026): called boinc_finish(0)

</stderr_txt>
]]>

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