Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
11:14:47 (4111452): wrapper (7.7.26015): starting
11:14:47 (4111452): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 11:14:47] Arguments: --nthreads 4
[2025-06-04 11:14:47] Threads: 4
[2025-06-04 11:14:47] Checking for CVMFS
[2025-06-04 11:14:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:14:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:14:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:14:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:14:47] 2.12.6.0 2389267 2793 53608 146788 2 79 4096704 6144001 5660 130560 0 14538728 99.998 704443 4912 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2025-06-04 11:14:47] CVMFS is ok
[2025-06-04 11:14:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:14:47] Checking for apptainer binary...
[2025-06-04 11:14:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:14:47] Running /usr/bin/apptainer --version
[2025-06-04 11:14:47] apptainer version 1.3.4
[2025-06-04 11:14:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:14:48] Starfish-Cruncher
[2025-06-04 11:14:48] apptainer works
[2025-06-04 11:14:48] Set ATHENA_PROC_NUMBER=4
[2025-06-04 11:14:48] Set ATHENA_CORE_NUMBER=4
[2025-06-04 11:14:48] Starting ATLAS job with PandaID=6679743219
[2025-06-04 11:14:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:52:50]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:52:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 12:52:50]  is_altstaged=None
[2025-06-04 12:52:50]  is_tar=False
[2025-06-04 12:52:50]  lfn=log.45006595._056676.job.log.tgz.1
[2025-06-04 12:52:50]  mtime=0
[2025-06-04 12:52:50]  protocol_id=None
[2025-06-04 12:52:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 12:52:50]  replicas=None
[2025-06-04 12:52:50]  scope=mc23_13p6TeV
[2025-06-04 12:52:50]  status=None
[2025-06-04 12:52:50]  status_code=0
[2025-06-04 12:52:50]  storage_token=
[2025-06-04 12:52:50]  surl=/var/lib/boinc-client/slots/7/PanDA_Pilot-6679743219/log.45006595._056676.job.log.tgz.1
[2025-06-04 12:52:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/47/log.45006595._056676.job.log.tgz.1
[2025-06-04 12:52:50]  workdir=None
[2025-06-04 12:52:50] ]
[2025-06-04 12:52:50] 2025-06-04 17:52:32,001 | INFO     | transferring file log.45006595._056676.job.log.tgz.1 from /var/lib/boinc-client/slots/7/PanDA_Pilot-6679743219/log.45006595._056676.job.log.tgz.1 to /var/lib/boinc
[2025-06-04 12:52:50] 2025-06-04 17:52:32,001 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/7/PanDA_Pilot-6679743219/log.45006595._056676.job.log.tgz.1 /var/lib/boinc-client/slots/7/log.450065
[2025-06-04 12:52:50] 2025-06-04 17:52:32,016 | INFO     | adding to output.list: log.45006595._056676.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/47/log.45006595._056676.job.log.tg
[2025-06-04 12:52:50] 2025-06-04 17:52:32,016 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 12:52:50] 2025-06-04 17:52:32,016 | INFO     | summary of transferred files:
[2025-06-04 12:52:50] 2025-06-04 17:52:32,016 | INFO     |  -- lfn=log.45006595._056676.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 12:52:50] 2025-06-04 17:52:32,017 | INFO     | stage-out finished correctly
[2025-06-04 12:52:50] 2025-06-04 17:52:32,198 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 12:52:50] 2025-06-04 17:52:34,590 | INFO     | job 6679743219 has state=finished
[2025-06-04 12:52:50] 2025-06-04 17:52:34,590 | INFO     | preparing for final server update for job 6679743219 in state='finished'
[2025-06-04 12:52:50] 2025-06-04 17:52:34,590 | INFO     | this job has now completed (state=finished)
[2025-06-04 12:52:50] 2025-06-04 17:52:34,590 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 12:52:50] 2025-06-04 17:52:34,590 | INFO     | log transfer has been attempted: DONE
[2025-06-04 12:52:50] 2025-06-04 17:52:34,590 | INFO     | job 6679743219 has finished - writing final server update
[2025-06-04 12:52:50] 2025-06-04 17:52:34,591 | INFO     | total number of processed events: 400 (read)
[2025-06-04 12:52:50] 2025-06-04 17:52:34,592 | INFO     | executing command: lscpu
[2025-06-04 12:52:50] 2025-06-04 17:52:34,620 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 12:52:50] 2025-06-04 17:52:37,373 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 12:52:50] 2025-06-04 17:52:37,373 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6679743219/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:52:50] 2025-06-04 17:52:37,374 | INFO     | extracted standard info from prmon json
[2025-06-04 12:52:50] 2025-06-04 17:52:37,374 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:52:50] 2025-06-04 17:52:37,374 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:52:50] 2025-06-04 17:52:37,374 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:52:50] 2025-06-04 17:52:37,374 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:52:50] 2025-06-04 17:52:37,376 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:52:50] 2025-06-04 17:52:37,376 | INFO     | sum of square deviations: 218571540.0
[2025-06-04 12:52:50] 2025-06-04 17:52:37,376 | INFO     | sum of deviations: -10897036584.0
[2025-06-04 12:52:50] 2025-06-04 17:52:37,376 | INFO     | mean x: 1749056708.0
[2025-06-04 12:52:50] 2025-06-04 17:52:37,376 | INFO     | mean y: 2420211.5730337077
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | -- intersect: 87202862385.18175
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | intersect: 87202862385.18175
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | chi2: 0.023505542407085023
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | -- intersect: 87202862385.18175
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | current memory leak: -49.86 B/s (using 89 data points, chi2=0.02)
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | ..............................
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | . Timing measurements:
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | . get job = 0 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | . initial setup = 2 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | . payload setup = 4 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,377 | INFO     | . stage-in = 0 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,378 | INFO     | . payload execution = 5833 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,378 | INFO     | . stage-out = 0 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,378 | INFO     | . log creation = 0 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,378 | INFO     | ..............................
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | 
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | job summary report
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | --------------------------------------------------
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | PanDA job id: 6679743219
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | task id: 45006595
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | errors: (none)
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | pilot state: finished 
[2025-06-04 12:52:50] 2025-06-04 17:52:37,446 | INFO     | transexitcode: 0
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | exeerrorcode: 0
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | exeerrordiag: 
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | exitcode: 0
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | exitmsg: OK
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | cpuconsumptiontime: 22492 s
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | nevents: 400
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | neventsw: 0
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | pid: 4128712
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | pgrp: 4128712
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | corecount: 4
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | event service: False
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | sizes: {0: 2397125, 1: 2397324, 3: 2397530, 11: 2397558, 5841: 2424219, 5842: 2433358, 5847: 2433472}
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | --------------------------------------------------
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | 
[2025-06-04 12:52:50] 2025-06-04 17:52:37,447 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-06-04 12:52:50] 2025-06-04 17:52:37,463 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,463 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,464 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:52:50] 2025-06-04 17:52:37,465 | INFO     | job 6679743219 has completed (purged errors)
[2025-06-04 12:52:50] 2025-06-04 17:52:37,465 | INFO     | overall cleanup function is called
[2025-06-04 12:52:50] 2025-06-04 17:52:37,892 | WARNING  | process 4128712 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 12:52:50] 2025-06-04 17:52:38,002 | INFO     | using path: /var/lib/boinc-client/slots/7/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:52:50] 2025-06-04 17:52:38,146 | INFO     | number of running child processes to parent process 4128712: 1
[2025-06-04 12:52:50] 2025-06-04 17:52:38,146 | INFO     | maximum number of monitored processes: 6
[2025-06-04 12:52:50] 2025-06-04 17:52:38,146 | INFO     | aborting job monitoring since job object (job id=6679743219) has expired
[2025-06-04 12:52:50] 2025-06-04 17:52:38,472 | INFO     | --- collectZombieJob: --- 10, [4128712]
[2025-06-04 12:52:50] 2025-06-04 17:52:38,472 | INFO     | zombie collector waiting for pid 4128712
[2025-06-04 12:52:50] 2025-06-04 17:52:38,472 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:52:50] 2025-06-04 17:52:38,473 | INFO     | collected zombie processes
[2025-06-04 12:52:50] 2025-06-04 17:52:38,473 | INFO     | will attempt to kill all subprocesses of pid=4128712
[2025-06-04 12:52:50] 2025-06-04 17:52:38,610 | INFO     | process IDs to be killed: [4128712] (in reverse order)
[2025-06-04 12:52:50] 2025-06-04 17:52:38,664 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:52:50] 2025-06-04 17:52:38,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:52:50] 2025-06-04 17:52:38,669 | INFO     | did not find any defunct processes belonging to 4128712
[2025-06-04 12:52:50] 2025-06-04 17:52:38,672 | INFO     | did not find any defunct processes belonging to 4128712
[2025-06-04 12:52:50] 2025-06-04 17:52:38,672 | INFO     | ready for new job
[2025-06-04 12:52:50] 2025-06-04 17:52:38,672 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:52:50] 2025-06-04 17:52:38,674 | INFO     | **************************************
[2025-06-04 12:52:50] 2025-06-04 17:52:38,674 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:52:50] 2025-06-04 17:52:38,674 | INFO     | **************************************
[2025-06-04 12:52:50] 2025-06-04 17:52:38,674 | INFO     | 
[2025-06-04 12:52:50] 2025-06-04 17:52:38,675 | INFO     | architecture information:
[2025-06-04 12:52:50] 2025-06-04 17:52:38,675 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:52:50] 2025-06-04 17:52:38,687 | INFO     | cat /etc/os-release:
[2025-06-04 12:52:50] NAME="CentOS Linux"
[2025-06-04 12:52:50] VERSION="7 (Core)"
[2025-06-04 12:52:50] ID="centos"
[2025-06-04 12:52:50] ID_LIKE="rhel fedora"
[2025-06-04 12:52:50] VERSION_ID="7"
[2025-06-04 12:52:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:52:50] ANSI_COLOR="0;31"
[2025-06-04 12:52:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:52:50] HOME_URL="https://www.centos.org/"
[2025-06-04 12:52:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:52:50] 
[2025-06-04 12:52:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:52:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:52:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:52:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:52:50] 
[2025-06-04 12:52:50] 2025-06-04 17:52:38,687 | INFO     | **************************************
[2025-06-04 12:52:50] 2025-06-04 17:52:39,176 | INFO     | PID=4121855 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 12:52:50] 2025-06-04 17:52:39,176 | INFO     | .. there are 5 such processes running
[2025-06-04 12:52:50] 2025-06-04 17:52:39,190 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-06-04 12:52:50] 2025-06-04 17:52:39,202 | INFO     | sufficient remaining disk space (1816730271744 B)
[2025-06-04 12:52:50] 2025-06-04 17:52:39,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | INFO     | update_server=False
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:52:50] 2025-06-04 17:52:39,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:52:50] 2025-06-04 17:52:39,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:52:50] 2025-06-04 17:52:39,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:52:50] 2025-06-04 17:52:39,204 | INFO     | aborting loop
[2025-06-04 12:52:50] 2025-06-04 17:52:39,439 | INFO     | all data control threads have been joined
[2025-06-04 12:52:50] 2025-06-04 17:52:39,602 | INFO     | all payload control threads have been joined
[2025-06-04 12:52:50] 2025-06-04 17:52:40,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:52:50] 2025-06-04 17:52:40,208 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,209 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,209 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,344 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,441 | INFO     | [data] control thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,543 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,607 | INFO     | [payload] control thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:40,819 | INFO     | all job control threads have been joined
[2025-06-04 12:52:50] 2025-06-04 17:52:41,151 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:41,452 | INFO     | [job] validate thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:41,453 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:41,501 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:41,645 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:41,824 | INFO     | [job] control thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:42,100 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:43,208 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:52:50] 2025-06-04 17:52:45,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137801742600000)>', '<ExcThread(monitor, started 137801385379584)>']
[2025-06-04 12:52:50] 2025-06-04 17:52:46,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:52:50] 2025-06-04 17:52:46,239 | INFO     | [monitor] control thread has ended
[2025-06-04 12:52:50] 2025-06-04 17:52:50,282 | INFO     | all workflow threads have been joined
[2025-06-04 12:52:50] 2025-06-04 17:52:50,282 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:52:50] 2025-06-04 17:52:50,283 | INFO     | traces error code: 0
[2025-06-04 12:52:50] 2025-06-04 17:52:50,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:52:50] 2025-06-04 17:52:50,352 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:52:50] 2025-06-04 17:52:50,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:52:50] 2025-06-04 17:52:50,356 [wrapper] pilotpid: 4121855
[2025-06-04 12:52:50] 2025-06-04 17:52:50,358 [wrapper] Pilot exit status: 0
[2025-06-04 12:52:50] 2025-06-04 17:52:50,364 [wrapper] pandaids: 6679743219
[2025-06-04 12:52:50] 2025-06-04 17:52:50,398 [wrapper] cleanup supervisor_pilot   68786 4121856
[2025-06-04 12:52:50] 2025-06-04 17:52:50,400 [wrapper] Test setup, not cleaning
[2025-06-04 12:52:50] 2025-06-04 17:52:50,402 [wrapper] apfmon messages muted
[2025-06-04 12:52:50] 2025-06-04 17:52:50,404 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:52:50] 2025-06-04 17:52:50,406 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:52:50]  *** Error codes and diagnostics ***
[2025-06-04 12:52:50]     "exeErrorCode": 0,
[2025-06-04 12:52:50]     "exeErrorDiag": "",
[2025-06-04 12:52:50]     "pilotErrorCode": 0,
[2025-06-04 12:52:50]     "pilotErrorDiag": "",
[2025-06-04 12:52:50]  *** Listing of results directory ***
[2025-06-04 12:52:50] total 394084
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc    495897 Jun  4 08:35 pilot3.tar.gz
[2025-06-04 12:52:50] -rwx------ 1 boinc boinc     37140 Jun  4 08:39 runpilot2-wrapper.sh
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc      5111 Jun  4 08:39 queuedata.json
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc       100 Jun  4 11:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:52:50] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 11:14 run_atlas
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc       105 Jun  4 11:14 job.xml
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc      9628 Jun  4 11:14 init_data.xml
[2025-06-04 12:52:50] -rw-r--r-- 2 boinc boinc 216591767 Jun  4 11:14 EVNT.45006593._000604.pool.root.1
[2025-06-04 12:52:50] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:14 start_atlas.sh
[2025-06-04 12:52:50] drwxrwx--x 2 boinc boinc      4096 Jun  4 11:14 shared
[2025-06-04 12:52:50] -rw-r--r-- 2 boinc boinc    508874 Jun  4 11:14 input.tar.gz
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc         0 Jun  4 11:14 boinc_lockfile
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc      2523 Jun  4 11:14 pandaJob.out
[2025-06-04 12:52:50] -rw------- 1 boinc boinc    990984 Jun  4 11:14 agis_schedconf.cvmfs.json
[2025-06-04 12:52:50] -rw------- 1 boinc boinc   1598969 Jun  4 11:14 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:52:50] drwx------ 4 boinc boinc      4096 Jun  4 11:14 pilot3
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc       529 Jun  4 12:52 boinc_task_state.xml
[2025-06-04 12:52:50] -rw------- 1 boinc boinc 181431853 Jun  4 12:52 HITS.45006595._056676.pool.root.1
[2025-06-04 12:52:50] -rw------- 1 boinc boinc        95 Jun  4 12:52 pilot_heartbeat.json
[2025-06-04 12:52:50] -rw------- 1 boinc boinc      1021 Jun  4 12:52 memory_monitor_summary.json
[2025-06-04 12:52:50] -rw------- 1 boinc boinc    264201 Jun  4 12:52 log.45006595._056676.job.log.tgz.1
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc        27 Jun  4 12:52 wrapper_checkpoint.txt
[2025-06-04 12:52:50] -rw------- 1 boinc boinc      7674 Jun  4 12:52 heartbeat.json
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc      8192 Jun  4 12:52 boinc_mmap_file
[2025-06-04 12:52:50] -rw------- 1 boinc boinc      4879 Jun  4 12:52 pilotlog.txt
[2025-06-04 12:52:50] -rw------- 1 boinc boinc    574848 Jun  4 12:52 log.45006595._056676.job.log.1
[2025-06-04 12:52:50] -rw------- 1 boinc boinc       357 Jun  4 12:52 output.list
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc       620 Jun  4 12:52 runtime_log
[2025-06-04 12:52:50] -rw------- 1 boinc boinc    860160 Jun  4 12:52 result.tar.gz
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc      8761 Jun  4 12:52 runtime_log.err
[2025-06-04 12:52:50] -rw------- 1 boinc boinc       651 Jun  4 12:52 qSpKDmDW3g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTznKDmQWPxim.diag
[2025-06-04 12:52:50] -rw-r--r-- 1 boinc boinc     21171 Jun  4 12:52 stderr.txt
[2025-06-04 12:52:50] HITS file was successfully produced:
[2025-06-04 12:52:50] -rw------- 1 boinc boinc 181431853 Jun  4 12:52 shared/HITS.pool.root.1
[2025-06-04 12:52:50]  *** Contents of shared directory: ***
[2025-06-04 12:52:50] total 390060
[2025-06-04 12:52:50] -rw-r--r-- 2 boinc boinc 216591767 Jun  4 11:14 ATLAS.root_0
[2025-06-04 12:52:50] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:14 start_atlas.sh
[2025-06-04 12:52:50] -rw-r--r-- 2 boinc boinc    508874 Jun  4 11:14 input.tar.gz
[2025-06-04 12:52:50] -rw------- 1 boinc boinc 181431853 Jun  4 12:52 HITS.pool.root.1
[2025-06-04 12:52:50] -rw------- 1 boinc boinc    860160 Jun  4 12:52 result.tar.gz
12:52:52 (4111452): run_atlas exited; CPU time 22567.909340
12:52:52 (4111452): called boinc_finish(0)

</stderr_txt>
]]>

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