Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:22:46 (444626): wrapper (7.7.26015): starting
07:22:46 (444626): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 07:22:46] Arguments: --nthreads 12
[2025-06-05 07:22:46] Threads: 12
[2025-06-05 07:22:46] Checking for CVMFS
[2025-06-05 07:22:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 07:22:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 07:22:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 07:22:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 07:22:46] 2.12.7.0 8354 9431 90684 146807 1 60 38131111 46080000 922 130560 0 12764237 99.996 1279321 37820 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-05 07:22:46] CVMFS is ok
[2025-06-05 07:22:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 07:22:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 07:22:46] Further information can be found at the LHC@home message board.
[2025-06-05 07:22:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 07:22:46] Checking for apptainer binary...
[2025-06-05 07:22:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 07:22:46] Running /usr/bin/apptainer --version
[2025-06-05 07:22:46] apptainer version 1.4.1-1.el9
[2025-06-05 07:22:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 07:22:46] minis01.farm.particle.cz
[2025-06-05 07:22:46] apptainer works
[2025-06-05 07:22:46] Set ATHENA_PROC_NUMBER=12
[2025-06-05 07:22:46] Set ATHENA_CORE_NUMBER=12
[2025-06-05 07:22:46] Starting ATLAS job with PandaID=6679711781
[2025-06-05 07:22:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:09:21]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:09:21]  mtime=0
[2025-06-05 08:09:21]  protocol_id=None
[2025-06-05 08:09:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 08:09:21]  replicas=None
[2025-06-05 08:09:21]  scope=mc23_13p6TeV
[2025-06-05 08:09:21]  status=None
[2025-06-05 08:09:21]  status_code=0
[2025-06-05 08:09:21]  storage_token=
[2025-06-05 08:09:21]  surl=/scratch/.boinc/slots/0/PanDA_Pilot-6679711781/log.45006595._056649.job.log.tgz.1
[2025-06-05 08:09:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/4e/log.45006595._056649.job.log.tgz.1
[2025-06-05 08:09:21]  workdir=None
[2025-06-05 08:09:21] ]
[2025-06-05 08:09:21] 2025-06-05 06:08:55,220 | INFO     | transferring file log.45006595._056649.job.log.tgz.1 from /scratch/.boinc/slots/0/PanDA_Pilot-6679711781/log.45006595._056649.job.log.tgz.1 to /scratch/.boinc/slot
[2025-06-05 08:09:21] 2025-06-05 06:08:55,221 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/0/PanDA_Pilot-6679711781/log.45006595._056649.job.log.tgz.1 /scratch/.boinc/slots/0/log.45006595._056649.j
[2025-06-05 08:09:21] 2025-06-05 06:08:55,236 | INFO     | adding to output.list: log.45006595._056649.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/4e/log.45006595._056649.job.log.tg
[2025-06-05 08:09:21] 2025-06-05 06:08:55,237 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 08:09:21] 2025-06-05 06:08:55,237 | INFO     | summary of transferred files:
[2025-06-05 08:09:21] 2025-06-05 06:08:55,237 | INFO     |  -- lfn=log.45006595._056649.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 08:09:21] 2025-06-05 06:08:55,237 | INFO     | stage-out finished correctly
[2025-06-05 08:09:21] 2025-06-05 06:08:55,851 | INFO     | monitor loop #211: job 0:6679711781 is in state 'finished'
[2025-06-05 08:09:21] 2025-06-05 06:08:55,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:09:21] 2025-06-05 06:08:56,190 | INFO     | PID=448414 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-05 08:09:21] 2025-06-05 06:08:56,190 | INFO     | .. there are 2 such processes running
[2025-06-05 08:09:21] 2025-06-05 06:08:57,445 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 08:09:21] 2025-06-05 06:08:57,513 | INFO     | job 6679711781 has state=finished
[2025-06-05 08:09:21] 2025-06-05 06:08:57,513 | INFO     | preparing for final server update for job 6679711781 in state='finished'
[2025-06-05 08:09:21] 2025-06-05 06:08:57,514 | INFO     | this job has now completed (state=finished)
[2025-06-05 08:09:21] 2025-06-05 06:08:57,514 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 08:09:21] 2025-06-05 06:08:57,514 | INFO     | log transfer has been attempted: DONE
[2025-06-05 08:09:21] 2025-06-05 06:08:57,514 | INFO     | job 6679711781 has finished - writing final server update
[2025-06-05 08:09:21] 2025-06-05 06:08:57,514 | INFO     | total number of processed events: 400 (read)
[2025-06-05 08:09:21] 2025-06-05 06:08:57,517 | INFO     | executing command: lscpu
[2025-06-05 08:09:21] 2025-06-05 06:08:57,553 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 08:09:21] 2025-06-05 06:08:58,354 | INFO     | monitor loop #212: job 0:6679711781 is in state 'finished'
[2025-06-05 08:09:21] 2025-06-05 06:08:58,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:09:21] 2025-06-05 06:09:00,857 | INFO     | monitor loop #213: job 0:6679711781 is in state 'finished'
[2025-06-05 08:09:21] 2025-06-05 06:09:00,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:09:21] 2025-06-05 06:09:01,033 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 08:09:21] 2025-06-05 06:09:01,033 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6679711781/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:09:21] 2025-06-05 06:09:01,034 | INFO     | extracted standard info from prmon json
[2025-06-05 08:09:21] 2025-06-05 06:09:01,034 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:09:21] 2025-06-05 06:09:01,034 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:09:21] 2025-06-05 06:09:01,035 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:09:21] 2025-06-05 06:09:01,035 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:09:21] 2025-06-05 06:09:01,036 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:09:21] 2025-06-05 06:09:01,037 | INFO     | sum of square deviations: 17003109.5
[2025-06-05 08:09:21] 2025-06-05 06:09:01,037 | INFO     | sum of deviations: -23272719.99999997
[2025-06-05 08:09:21] 2025-06-05 06:09:01,037 | INFO     | mean x: 1749102432.5
[2025-06-05 08:09:21] 2025-06-05 06:09:01,037 | INFO     | mean y: 3053487.1052631577
[2025-06-05 08:09:21] 2025-06-05 06:09:01,037 | INFO     | -- intersect: 2397108007.7146463
[2025-06-05 08:09:21] 2025-06-05 06:09:01,037 | INFO     | intersect: 2397108007.7146463
[2025-06-05 08:09:21] 2025-06-05 06:09:01,037 | INFO     | chi2: 0.009265796249384794
[2025-06-05 08:09:21] 2025-06-05 06:09:01,038 | INFO     | -- intersect: 2397108007.7146463
[2025-06-05 08:09:21] 2025-06-05 06:09:01,038 | INFO     | current memory leak: -1.37 B/s (using 38 data points, chi2=0.01)
[2025-06-05 08:09:21] 2025-06-05 06:09:01,038 | INFO     | ..............................
[2025-06-05 08:09:21] 2025-06-05 06:09:01,038 | INFO     | . Timing measurements:
[2025-06-05 08:09:21] 2025-06-05 06:09:01,038 | INFO     | . get job = 0 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,038 | INFO     | . initial setup = 1 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,039 | INFO     | . payload setup = 5 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,039 | INFO     | . stage-in = 0 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,039 | INFO     | . payload execution = 2736 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,039 | INFO     | . stage-out = 0 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,039 | INFO     | . log creation = 0 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,039 | INFO     | ..............................
[2025-06-05 08:09:21] 2025-06-05 06:09:01,399 | INFO     | 
[2025-06-05 08:09:21] 2025-06-05 06:09:01,399 | INFO     | job summary report
[2025-06-05 08:09:21] 2025-06-05 06:09:01,399 | INFO     | --------------------------------------------------
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | PanDA job id: 6679711781
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | task id: 45006595
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | errors: (none)
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | pilot state: finished 
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | transexitcode: 0
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | exeerrorcode: 0
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | exeerrordiag: 
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | exitcode: 0
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | exitmsg: OK
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | cpuconsumptiontime: 28538 s
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | nevents: 400
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | neventsw: 0
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | pid: 455188
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | pgrp: 455188
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | corecount: 12
[2025-06-05 08:09:21] 2025-06-05 06:09:01,400 | INFO     | event service: False
[2025-06-05 08:09:21] 2025-06-05 06:09:01,401 | INFO     | sizes: {0: 2397292, 4: 2397498, 11: 2397526, 2745: 2422835, 2746: 2431833, 2748: 2431833, 2752: 2432131}
[2025-06-05 08:09:21] 2025-06-05 06:09:01,401 | INFO     | --------------------------------------------------
[2025-06-05 08:09:21] 2025-06-05 06:09:01,401 | INFO     | 
[2025-06-05 08:09:21] 2025-06-05 06:09:01,401 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-06-05 08:09:21] 2025-06-05 06:09:01,416 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,416 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,416 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,416 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,416 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,416 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,418 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:09:21] 2025-06-05 06:09:01,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,418 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:09:21] 2025-06-05 06:09:01,418 | INFO     | job 6679711781 has completed (purged errors)
[2025-06-05 08:09:21] 2025-06-05 06:09:01,418 | INFO     | overall cleanup function is called
[2025-06-05 08:09:21] 2025-06-05 06:09:02,426 | INFO     | --- collectZombieJob: --- 10, [455188]
[2025-06-05 08:09:21] 2025-06-05 06:09:02,427 | INFO     | zombie collector waiting for pid 455188
[2025-06-05 08:09:21] 2025-06-05 06:09:02,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:09:21] 2025-06-05 06:09:02,427 | INFO     | collected zombie processes
[2025-06-05 08:09:21] 2025-06-05 06:09:02,427 | INFO     | will attempt to kill all subprocesses of pid=455188
[2025-06-05 08:09:21] 2025-06-05 06:09:02,558 | INFO     | process IDs to be killed: [455188] (in reverse order)
[2025-06-05 08:09:21] 2025-06-05 06:09:02,604 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:09:21] 2025-06-05 06:09:02,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:09:21] 2025-06-05 06:09:02,608 | INFO     | did not find any defunct processes belonging to 455188
[2025-06-05 08:09:21] 2025-06-05 06:09:02,612 | INFO     | did not find any defunct processes belonging to 455188
[2025-06-05 08:09:21] 2025-06-05 06:09:02,612 | INFO     | ready for new job
[2025-06-05 08:09:21] 2025-06-05 06:09:02,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:09:21] 2025-06-05 06:09:02,613 | INFO     | **************************************
[2025-06-05 08:09:21] 2025-06-05 06:09:02,613 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:09:21] 2025-06-05 06:09:02,613 | INFO     | **************************************
[2025-06-05 08:09:21] 2025-06-05 06:09:02,613 | INFO     | 
[2025-06-05 08:09:21] 2025-06-05 06:09:02,615 | INFO     | architecture information:
[2025-06-05 08:09:21] 2025-06-05 06:09:02,615 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:09:21] 2025-06-05 06:09:02,628 | INFO     | cat /etc/os-release:
[2025-06-05 08:09:21] NAME="CentOS Linux"
[2025-06-05 08:09:21] VERSION="7 (Core)"
[2025-06-05 08:09:21] ID="centos"
[2025-06-05 08:09:21] ID_LIKE="rhel fedora"
[2025-06-05 08:09:21] VERSION_ID="7"
[2025-06-05 08:09:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:09:21] ANSI_COLOR="0;31"
[2025-06-05 08:09:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:09:21] HOME_URL="https://www.centos.org/"
[2025-06-05 08:09:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:09:21] 
[2025-06-05 08:09:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:09:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:09:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:09:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:09:21] 
[2025-06-05 08:09:21] 2025-06-05 06:09:02,628 | INFO     | **************************************
[2025-06-05 08:09:21] 2025-06-05 06:09:03,131 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-06-05 08:09:21] 2025-06-05 06:09:03,145 | INFO     | sufficient remaining disk space (715702403072 B)
[2025-06-05 08:09:21] 2025-06-05 06:09:03,145 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:09:21] 2025-06-05 06:09:03,146 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:09:21] 2025-06-05 06:09:03,146 | INFO     | update_server=False
[2025-06-05 08:09:21] 2025-06-05 06:09:03,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:09:21] 2025-06-05 06:09:03,146 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 08:09:21] 2025-06-05 06:09:03,147 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:09:21] 2025-06-05 06:09:03,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:09:21] 2025-06-05 06:09:03,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:09:21] 2025-06-05 06:09:03,172 | INFO     | all payload control threads have been joined
[2025-06-05 08:09:21] 2025-06-05 06:09:03,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:09:21] 2025-06-05 06:09:03,361 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 08:09:21] 2025-06-05 06:09:03,361 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 08:09:21] 2025-06-05 06:09:03,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:09:21] 2025-06-05 06:09:03,362 | INFO     | will abort loop
[2025-06-05 08:09:21] 2025-06-05 06:09:03,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:09:21] 2025-06-05 06:09:04,023 | INFO     | all data control threads have been joined
[2025-06-05 08:09:21] 2025-06-05 06:09:04,151 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:04,177 | INFO     | [payload] control thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:04,188 | INFO     | [job] validate thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:04,230 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:04,242 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:04,276 | INFO     | all job control threads have been joined
[2025-06-05 08:09:21] 2025-06-05 06:09:04,367 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:04,471 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:04,590 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:05,028 | INFO     | [data] control thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:05,038 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:05,262 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:05,282 | INFO     | [job] control thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:05,323 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:06,124 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:09:21] 2025-06-05 06:09:07,130 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:07,525 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:13,705 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:09:21] 2025-06-05 06:09:14,711 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:09:21] 2025-06-05 06:09:15,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140594228184896)>', '<ExcThread(monitor, started 140593606948608)>']
[2025-06-05 08:09:21] 2025-06-05 06:09:16,212 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:09:21] 2025-06-05 06:09:16,212 | INFO     | [monitor] control thread has ended
[2025-06-05 08:09:21] 2025-06-05 06:09:20,837 | INFO     | all workflow threads have been joined
[2025-06-05 08:09:21] 2025-06-05 06:09:20,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:09:21] 2025-06-05 06:09:20,838 | INFO     | traces error code: 0
[2025-06-05 08:09:21] 2025-06-05 06:09:20,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:09:21] 2025-06-05 06:09:20,943 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:09:21] 2025-06-05 06:09:20,946 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:09:21] 2025-06-05 06:09:20,948 [wrapper] pilotpid: 448414
[2025-06-05 08:09:21] 2025-06-05 06:09:20,950 [wrapper] Pilot exit status: 0
[2025-06-05 08:09:21] 2025-06-05 06:09:20,960 [wrapper] pandaids: 6679711781
[2025-06-05 08:09:21] 2025-06-05 06:09:20,990 [wrapper] cleanup supervisor_pilot  505119 448415
[2025-06-05 08:09:21] 2025-06-05 06:09:20,993 [wrapper] Test setup, not cleaning
[2025-06-05 08:09:21] 2025-06-05 06:09:20,995 [wrapper] apfmon messages muted
[2025-06-05 08:09:21] 2025-06-05 06:09:20,998 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:09:21] 2025-06-05 06:09:21,000 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:09:21]  *** Error codes and diagnostics ***
[2025-06-05 08:09:21]     "exeErrorCode": 0,
[2025-06-05 08:09:21]     "exeErrorDiag": "",
[2025-06-05 08:09:21]     "pilotErrorCode": 0,
[2025-06-05 08:09:21]     "pilotErrorDiag": "",
[2025-06-05 08:09:21]  *** Listing of results directory ***
[2025-06-05 08:09:21] total 392460
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc    495897 Jun  4 14:39 pilot3.tar.gz
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc      5111 Jun  4 15:04 queuedata.json
[2025-06-05 08:09:21] -rwx------ 1 boinc boinc     37140 Jun  4 15:07 runpilot2-wrapper.sh
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc       100 Jun  5 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:09:21] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 07:22 run_atlas
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc       105 Jun  5 07:22 job.xml
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc      6523 Jun  5 07:22 init_data.xml
[2025-06-05 08:09:21] -rw-r--r-- 2 boinc boinc 218689505 Jun  5 07:22 EVNT.45006593._001734.pool.root.1
[2025-06-05 08:09:21] -rw-r--r-- 2 boinc boinc     15093 Jun  5 07:22 start_atlas.sh
[2025-06-05 08:09:21] drwxrwx--x 2 boinc boinc      4096 Jun  5 07:22 shared
[2025-06-05 08:09:21] -rw-r--r-- 2 boinc boinc    508880 Jun  5 07:22 input.tar.gz
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc         0 Jun  5 07:22 boinc_lockfile
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc      2524 Jun  5 07:22 pandaJob.out
[2025-06-05 08:09:21] -rw------- 1 boinc boinc    987109 Jun  5 07:22 agis_schedconf.cvmfs.json
[2025-06-05 08:09:21] -rw------- 1 boinc boinc   1598969 Jun  5 07:22 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:09:21] drwx------ 4 boinc boinc      4096 Jun  5 07:22 pilot3
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc       529 Jun  5 08:08 boinc_task_state.xml
[2025-06-05 08:09:21] -rw------- 1 boinc boinc 178065811 Jun  5 08:08 HITS.45006595._056649.pool.root.1
[2025-06-05 08:09:21] -rw------- 1 boinc boinc        95 Jun  5 08:08 pilot_heartbeat.json
[2025-06-05 08:09:21] -rw------- 1 boinc boinc      1012 Jun  5 08:08 memory_monitor_summary.json
[2025-06-05 08:09:21] -rw------- 1 boinc boinc    346002 Jun  5 08:08 log.45006595._056649.job.log.tgz.1
[2025-06-05 08:09:21] -rw------- 1 boinc boinc      7681 Jun  5 08:09 heartbeat.json
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc      8192 Jun  5 08:09 boinc_mmap_file
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc        27 Jun  5 08:09 wrapper_checkpoint.txt
[2025-06-05 08:09:21] -rw------- 1 boinc boinc      4736 Jun  5 08:09 pilotlog.txt
[2025-06-05 08:09:21] -rw------- 1 boinc boinc    296240 Jun  5 08:09 log.45006595._056649.job.log.1
[2025-06-05 08:09:21] -rw------- 1 boinc boinc       357 Jun  5 08:09 output.list
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc       620 Jun  5 08:09 runtime_log
[2025-06-05 08:09:21] -rw------- 1 boinc boinc    665600 Jun  5 08:09 result.tar.gz
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc      8720 Jun  5 08:09 runtime_log.err
[2025-06-05 08:09:21] -rw------- 1 boinc boinc       663 Jun  5 08:09 P72KDm602g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7ynKDmeVKmon.diag
[2025-06-05 08:09:21] -rw-r--r-- 1 boinc boinc     21704 Jun  5 08:09 stderr.txt
[2025-06-05 08:09:21] HITS file was successfully produced:
[2025-06-05 08:09:21] -rw------- 1 boinc boinc 178065811 Jun  5 08:08 shared/HITS.pool.root.1
[2025-06-05 08:09:21]  *** Contents of shared directory: ***
[2025-06-05 08:09:21] total 388636
[2025-06-05 08:09:21] -rw-r--r-- 2 boinc boinc 218689505 Jun  5 07:22 ATLAS.root_0
[2025-06-05 08:09:21] -rw-r--r-- 2 boinc boinc     15093 Jun  5 07:22 start_atlas.sh
[2025-06-05 08:09:21] -rw-r--r-- 2 boinc boinc    508880 Jun  5 07:22 input.tar.gz
[2025-06-05 08:09:21] -rw------- 1 boinc boinc 178065811 Jun  5 08:08 HITS.pool.root.1
[2025-06-05 08:09:21] -rw------- 1 boinc boinc    665600 Jun  5 08:09 result.tar.gz
08:09:22 (444626): run_atlas exited; CPU time 28546.930222
08:09:22 (444626): called boinc_finish(0)

</stderr_txt>
]]>

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