Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:43:11 (153411): wrapper (7.7.26015): starting
10:43:11 (153411): wrapper: running run_atlas (--nthreads 9)
[2025-06-04 10:43:11] Arguments: --nthreads 9
[2025-06-04 10:43:11] Threads: 9
[2025-06-04 10:43:11] Checking for CVMFS
[2025-06-04 10:43:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:43:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:43:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:43:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:43:12] 2.11.2.0 6636 28918 247232 146783 1 65 17600012 18432000 6790 130560 0 69240384 99.497 67705536 29312 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 10:43:12] CVMFS is ok
[2025-06-04 10:43:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:43:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:43:12] Further information can be found at the LHC@home message board.
[2025-06-04 10:43:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:43:12] Checking for apptainer binary...
[2025-06-04 10:43:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:43:12] Running /usr/bin/apptainer --version
[2025-06-04 10:43:12] apptainer version 1.3.2-1.el7
[2025-06-04 10:43:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:43:13] c-210-37-3.aglt2.org
[2025-06-04 10:43:13] apptainer works
[2025-06-04 10:43:13] Set ATHENA_PROC_NUMBER=9
[2025-06-04 10:43:13] Set ATHENA_CORE_NUMBER=9
[2025-06-04 10:43:13] Starting ATLAS job with PandaID=6679707438
[2025-06-04 10:43:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:46:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:46:35]  is_tar=False
[2025-06-04 11:46:35]  lfn=log.45006595._056645.job.log.tgz.1
[2025-06-04 11:46:35]  mtime=0
[2025-06-04 11:46:35]  protocol_id=None
[2025-06-04 11:46:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:46:35]  replicas=None
[2025-06-04 11:46:35]  scope=mc23_13p6TeV
[2025-06-04 11:46:35]  status=None
[2025-06-04 11:46:35]  status_code=0
[2025-06-04 11:46:35]  storage_token=
[2025-06-04 11:46:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679707438/log.45006595._056645.job.log.tgz.1
[2025-06-04 11:46:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/ff/log.45006595._056645.job.log.tgz.1
[2025-06-04 11:46:35]  workdir=None
[2025-06-04 11:46:35] ]
[2025-06-04 11:46:35] 2025-06-04 15:46:07,080 | INFO     | transferring file log.45006595._056645.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679707438/log.45006595._056645.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:46:35] 2025-06-04 15:46:07,080 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679707438/log.45006595._056645.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._056645.job
[2025-06-04 11:46:35] 2025-06-04 15:46:07,105 | INFO     | adding to output.list: log.45006595._056645.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/ff/log.45006595._056645.job.log.tg
[2025-06-04 11:46:35] 2025-06-04 15:46:07,106 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:46:35] 2025-06-04 15:46:07,106 | INFO     | summary of transferred files:
[2025-06-04 11:46:35] 2025-06-04 15:46:07,106 | INFO     |  -- lfn=log.45006595._056645.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:46:35] 2025-06-04 15:46:07,106 | INFO     | stage-out finished correctly
[2025-06-04 11:46:35] 2025-06-04 15:46:08,629 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:46:35] 2025-06-04 15:46:08,893 | INFO     | monitor loop #287: job 0:6679707438 is in state 'finished'
[2025-06-04 11:46:35] 2025-06-04 15:46:08,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:46:35] 2025-06-04 15:46:09,961 | INFO     | job 6679707438 has state=finished
[2025-06-04 11:46:35] 2025-06-04 15:46:09,962 | INFO     | preparing for final server update for job 6679707438 in state='finished'
[2025-06-04 11:46:35] 2025-06-04 15:46:09,963 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:46:35] 2025-06-04 15:46:09,963 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:46:35] 2025-06-04 15:46:09,963 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:46:35] 2025-06-04 15:46:09,964 | INFO     | job 6679707438 has finished - writing final server update
[2025-06-04 11:46:35] 2025-06-04 15:46:09,964 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:46:35] 2025-06-04 15:46:09,971 | INFO     | executing command: lscpu
[2025-06-04 11:46:35] 2025-06-04 15:46:10,004 | INFO     | PID=156998 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 11:46:35] 2025-06-04 15:46:10,004 | INFO     | .. there are 10 such processes running
[2025-06-04 11:46:35] 2025-06-04 15:46:10,024 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:46:35] 2025-06-04 15:46:11,396 | INFO     | monitor loop #288: job 0:6679707438 is in state 'finished'
[2025-06-04 11:46:35] 2025-06-04 15:46:11,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:46:35] 2025-06-04 15:46:13,900 | INFO     | monitor loop #289: job 0:6679707438 is in state 'finished'
[2025-06-04 11:46:35] 2025-06-04 15:46:13,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:46:35] 2025-06-04 15:46:15,018 | INFO     | 3771s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 11:46:35] 2025-06-04 15:46:15,469 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:46:35] 2025-06-04 15:46:15,470 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679707438/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:46:35] 2025-06-04 15:46:15,471 | INFO     | extracted standard info from prmon json
[2025-06-04 11:46:35] 2025-06-04 15:46:15,471 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:46:35] 2025-06-04 15:46:15,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:46:35] 2025-06-04 15:46:15,471 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:46:35] 2025-06-04 15:46:15,471 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:46:35] 2025-06-04 15:46:15,473 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:46:35] 2025-06-04 15:46:15,473 | INFO     | sum of square deviations: 51573060.0
[2025-06-04 11:46:35] 2025-06-04 15:46:15,473 | INFO     | sum of deviations: -6052090477.999999
[2025-06-04 11:46:35] 2025-06-04 15:46:15,473 | INFO     | mean x: 1749050186.0
[2025-06-04 11:46:35] 2025-06-04 15:46:15,473 | INFO     | mean y: 2671248.709090909
[2025-06-04 11:46:35] 2025-06-04 15:46:15,473 | INFO     | -- intersect: 205253435431.30222
[2025-06-04 11:46:35] 2025-06-04 15:46:15,474 | INFO     | intersect: 205253435431.30222
[2025-06-04 11:46:35] 2025-06-04 15:46:15,474 | INFO     | chi2: 0.05023862347948696
[2025-06-04 11:46:35] 2025-06-04 15:46:15,474 | INFO     | -- intersect: 205253435431.30222
[2025-06-04 11:46:35] 2025-06-04 15:46:15,474 | INFO     | current memory leak: -117.35 B/s (using 55 data points, chi2=0.05)
[2025-06-04 11:46:35] 2025-06-04 15:46:15,474 | INFO     | ..............................
[2025-06-04 11:46:35] 2025-06-04 15:46:15,474 | INFO     | . Timing measurements:
[2025-06-04 11:46:35] 2025-06-04 15:46:15,474 | INFO     | . get job = 0 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,475 | INFO     | . initial setup = 2 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,475 | INFO     | . payload setup = 7 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,475 | INFO     | . stage-in = 0 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,475 | INFO     | . payload execution = 3734 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,475 | INFO     | . stage-out = 0 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,475 | INFO     | . log creation = 0 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,475 | INFO     | ..............................
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | 
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | job summary report
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | --------------------------------------------------
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | PanDA job id: 6679707438
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | task id: 45006595
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | errors: (none)
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | pilot state: finished 
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | transexitcode: 0
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | exeerrorcode: 0
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | exeerrordiag: 
[2025-06-04 11:46:35] 2025-06-04 15:46:15,557 | INFO     | exitcode: 0
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | exitmsg: OK
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | cpuconsumptiontime: 30127 s
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | nevents: 400
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | neventsw: 0
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | pid: 163795
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | pgrp: 163795
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | corecount: 9
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | event service: False
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | sizes: {0: 2397291, 5: 2397497, 11: 2397553, 3744: 2423199, 3745: 2432140, 3747: 2432196, 3754: 2432494}
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | --------------------------------------------------
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | 
[2025-06-04 11:46:35] 2025-06-04 15:46:15,558 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:46:35] 2025-06-04 15:46:15,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,575 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:46:35] 2025-06-04 15:46:15,576 | INFO     | job 6679707438 has completed (purged errors)
[2025-06-04 11:46:35] 2025-06-04 15:46:15,576 | INFO     | overall cleanup function is called
[2025-06-04 11:46:35] 2025-06-04 15:46:16,583 | INFO     | --- collectZombieJob: --- 10, [163795]
[2025-06-04 11:46:35] 2025-06-04 15:46:16,583 | INFO     | zombie collector waiting for pid 163795
[2025-06-04 11:46:35] 2025-06-04 15:46:16,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:46:35] 2025-06-04 15:46:16,583 | INFO     | collected zombie processes
[2025-06-04 11:46:35] 2025-06-04 15:46:16,583 | INFO     | will attempt to kill all subprocesses of pid=163795
[2025-06-04 11:46:35] 2025-06-04 15:46:16,750 | INFO     | process IDs to be killed: [163795] (in reverse order)
[2025-06-04 11:46:35] 2025-06-04 15:46:16,809 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:46:35] 2025-06-04 15:46:16,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:46:35] 2025-06-04 15:46:16,814 | INFO     | did not find any defunct processes belonging to 163795
[2025-06-04 11:46:35] 2025-06-04 15:46:16,818 | INFO     | did not find any defunct processes belonging to 163795
[2025-06-04 11:46:35] 2025-06-04 15:46:16,818 | INFO     | ready for new job
[2025-06-04 11:46:35] 2025-06-04 15:46:16,818 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:46:35] 2025-06-04 15:46:16,819 | INFO     | **************************************
[2025-06-04 11:46:35] 2025-06-04 15:46:16,820 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:46:35] 2025-06-04 15:46:16,820 | INFO     | **************************************
[2025-06-04 11:46:35] 2025-06-04 15:46:16,820 | INFO     | 
[2025-06-04 11:46:35] 2025-06-04 15:46:16,822 | INFO     | architecture information:
[2025-06-04 11:46:35] 2025-06-04 15:46:16,822 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:46:35] 2025-06-04 15:46:16,836 | INFO     | cat /etc/os-release:
[2025-06-04 11:46:35] NAME="CentOS Linux"
[2025-06-04 11:46:35] VERSION="7 (Core)"
[2025-06-04 11:46:35] ID="centos"
[2025-06-04 11:46:35] ID_LIKE="rhel fedora"
[2025-06-04 11:46:35] VERSION_ID="7"
[2025-06-04 11:46:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:46:35] ANSI_COLOR="0;31"
[2025-06-04 11:46:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:46:35] HOME_URL="https://www.centos.org/"
[2025-06-04 11:46:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:46:35] 
[2025-06-04 11:46:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:46:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:46:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:46:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:46:35] 
[2025-06-04 11:46:35] 2025-06-04 15:46:16,836 | INFO     | **************************************
[2025-06-04 11:46:35] 2025-06-04 15:46:17,340 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:46:35] 2025-06-04 15:46:17,366 | INFO     | sufficient remaining disk space (56635686912 B)
[2025-06-04 11:46:35] 2025-06-04 15:46:17,366 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:46:35] 2025-06-04 15:46:17,367 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:46:35] 2025-06-04 15:46:17,367 | INFO     | update_server=False
[2025-06-04 11:46:35] 2025-06-04 15:46:17,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:46:35] 2025-06-04 15:46:17,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:46:35] 2025-06-04 15:46:17,408 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:46:35] 2025-06-04 15:46:17,408 | INFO     | aborting loop
[2025-06-04 11:46:35] 2025-06-04 15:46:17,596 | INFO     | all data control threads have been joined
[2025-06-04 11:46:35] 2025-06-04 15:46:17,699 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:46:35] 2025-06-04 15:46:17,723 | INFO     | all payload control threads have been joined
[2025-06-04 11:46:35] 2025-06-04 15:46:18,030 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:46:35] 2025-06-04 15:46:18,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:46:35] 2025-06-04 15:46:18,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:46:35] 2025-06-04 15:46:18,372 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:18,372 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:18,401 | INFO     | all job control threads have been joined
[2025-06-04 11:46:35] 2025-06-04 15:46:18,414 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:18,598 | INFO     | [data] control thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:18,603 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:18,729 | INFO     | [payload] control thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:18,929 | INFO     | [job] validate thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:18,965 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:19,220 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:46:35] 2025-06-04 15:46:19,236 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:19,248 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:19,329 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:19,389 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:19,406 | INFO     | [job] control thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:19,704 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:23,226 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:28,249 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:46:35] 2025-06-04 15:46:29,252 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:46:35] 2025-06-04 15:46:30,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139954291885888)>', '<ExcThread(monitor, started 139953681966848)>']
[2025-06-04 11:46:35] 2025-06-04 15:46:31,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:46:35] 2025-06-04 15:46:31,091 | INFO     | [monitor] control thread has ended
[2025-06-04 11:46:35] 2025-06-04 15:46:35,409 | INFO     | all workflow threads have been joined
[2025-06-04 11:46:35] 2025-06-04 15:46:35,409 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:46:35] 2025-06-04 15:46:35,409 | INFO     | traces error code: 0
[2025-06-04 11:46:35] 2025-06-04 15:46:35,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:46:35] 2025-06-04 15:46:35,537 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:46:35] 2025-06-04 15:46:35,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:46:35] 2025-06-04 15:46:35,546 [wrapper] pilotpid: 156998
[2025-06-04 11:46:35] 2025-06-04 15:46:35,553 [wrapper] Pilot exit status: 0
[2025-06-04 11:46:35] 2025-06-04 15:46:35,572 [wrapper] pandaids: 6679707438
[2025-06-04 11:46:35] 2025-06-04 15:46:35,621 [wrapper] cleanup supervisor_pilot 272633 156999
[2025-06-04 11:46:35] 2025-06-04 15:46:35,626 [wrapper] Test setup, not cleaning
[2025-06-04 11:46:35] 2025-06-04 15:46:35,629 [wrapper] apfmon messages muted
[2025-06-04 11:46:35] 2025-06-04 15:46:35,632 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:46:35] 2025-06-04 15:46:35,635 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:46:35]  *** Error codes and diagnostics ***
[2025-06-04 11:46:35]     "exeErrorCode": 0,
[2025-06-04 11:46:35]     "exeErrorDiag": "",
[2025-06-04 11:46:35]     "pilotErrorCode": 0,
[2025-06-04 11:46:35]     "pilotErrorDiag": "",
[2025-06-04 11:46:35]  *** Listing of results directory ***
[2025-06-04 11:46:35] total 395748
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 08:39 pilot3.tar.gz
[2025-06-04 11:46:35] -rwx------ 1 boincer umatlas     37140 Jun  4 09:01 runpilot2-wrapper.sh
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 09:01 queuedata.json
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas       100 Jun  4 10:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:46:35] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 10:43 run_atlas
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas       105 Jun  4 10:43 job.xml
[2025-06-04 11:46:35] -rw-r--r-- 2 boincer umatlas 216372102 Jun  4 10:43 EVNT.45006593._001838.pool.root.1
[2025-06-04 11:46:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:43 start_atlas.sh
[2025-06-04 11:46:35] drwxrwx--x 2 boincer umatlas      4096 Jun  4 10:43 shared
[2025-06-04 11:46:35] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 10:43 input.tar.gz
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas         0 Jun  4 10:43 boinc_lockfile
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas      2524 Jun  4 10:43 pandaJob.out
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas    987207 Jun  4 10:43 agis_schedconf.cvmfs.json
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas   1598969 Jun  4 10:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:46:35] drwx------ 4 boincer umatlas      4096 Jun  4 10:43 pilot3
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas       529 Jun  4 11:45 boinc_task_state.xml
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas 183625723 Jun  4 11:45 HITS.45006595._056645.pool.root.1
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas      6354 Jun  4 11:46 init_data.xml
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas      1067 Jun  4 11:46 memory_monitor_summary.json
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas    319174 Jun  4 11:46 log.45006595._056645.job.log.tgz.1
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas        95 Jun  4 11:46 pilot_heartbeat.json
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas      7752 Jun  4 11:46 heartbeat.json
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 11:46 boinc_mmap_file
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas        27 Jun  4 11:46 wrapper_checkpoint.txt
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas      4425 Jun  4 11:46 pilotlog.txt
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas    386514 Jun  4 11:46 log.45006595._056645.job.log.1
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas       357 Jun  4 11:46 output.list
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas       620 Jun  4 11:46 runtime_log
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas    727040 Jun  4 11:46 result.tar.gz
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 11:46 runtime_log.err
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas       659 Jun  4 11:46 DUsMDm4u2g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4ynKDmNUZwKo.diag
[2025-06-04 11:46:35] -rw-r--r-- 1 boincer umatlas     21546 Jun  4 11:46 stderr.txt
[2025-06-04 11:46:35] HITS file was successfully produced:
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas 183625723 Jun  4 11:45 shared/HITS.pool.root.1
[2025-06-04 11:46:35]  *** Contents of shared directory: ***
[2025-06-04 11:46:35] total 391860
[2025-06-04 11:46:35] -rw-r--r-- 2 boincer umatlas 216372102 Jun  4 10:43 ATLAS.root_0
[2025-06-04 11:46:35] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:43 start_atlas.sh
[2025-06-04 11:46:35] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 10:43 input.tar.gz
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas 183625723 Jun  4 11:45 HITS.pool.root.1
[2025-06-04 11:46:35] -rw------- 1 boincer umatlas    727040 Jun  4 11:46 result.tar.gz
11:46:36 (153411): run_atlas exited; CPU time 30163.012646
11:46:36 (153411): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN