Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:18:07 (25693): wrapper (7.7.26015): starting
02:18:07 (25693): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 02:18:07] Arguments: --nthreads 8
[2025-06-05 02:18:07] Threads: 8
[2025-06-05 02:18:07] Checking for CVMFS
[2025-06-05 02:18:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 02:18:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 02:18:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 02:18:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 02:18:10] 2.11.2.0 32728 33906 92156 146799 3 10 13032821 25165825 3906 130560 0 17622827 99.803 19564134 2250 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 02:18:10] CVMFS is ok
[2025-06-05 02:18:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 02:18:10] Checking for apptainer binary...
[2025-06-05 02:18:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 02:18:10] Running /usr/bin/apptainer --version
[2025-06-05 02:18:10] apptainer version 1.3.2-1.el7
[2025-06-05 02:18:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:32:18] cg-vwn337.simple-grid.lan
[2025-06-05 02:32:18] apptainer works
[2025-06-05 02:32:18] Set ATHENA_PROC_NUMBER=8
[2025-06-05 02:32:18] Set ATHENA_CORE_NUMBER=8
[2025-06-05 02:32:18] Starting ATLAS job with PandaID=6666849963
[2025-06-05 02:32:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:44:49]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:44:49] 2025-06-05 06:04:09,510 | INFO     | extracted standard info from prmon json
[2025-06-05 12:44:49] 2025-06-05 06:04:09,510 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:44:49] 2025-06-05 06:04:09,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:44:49] 2025-06-05 06:04:09,511 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:44:49] 2025-06-05 06:04:09,511 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:44:49] 2025-06-05 06:04:09,517 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:44:49] 2025-06-05 06:04:09,518 | INFO     | sum of square deviations: 9599817202.5
[2025-06-05 12:44:49] 2025-06-05 06:04:09,527 | INFO     | sum of deviations: 111691867084.49997
[2025-06-05 12:44:49] 2025-06-05 06:04:09,528 | INFO     | mean x: 1749093756.5
[2025-06-05 12:44:49] 2025-06-05 06:04:09,528 | INFO     | mean y: 2450543.652866242
[2025-06-05 12:44:49] 2025-06-05 06:04:09,528 | INFO     | -- intersect: -20347889806.416603
[2025-06-05 12:44:49] 2025-06-05 06:04:09,528 | INFO     | intersect: -20347889806.416603
[2025-06-05 12:44:49] 2025-06-05 06:04:09,528 | INFO     | chi2: 6.746661230788509
[2025-06-05 12:44:49] 2025-06-05 06:04:09,529 | INFO     | sum of square deviations: 9148487810.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,532 | INFO     | sum of deviations: 130495493606.99994
[2025-06-05 12:44:49] 2025-06-05 06:04:09,532 | INFO     | mean x: 1749093604.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,532 | INFO     | mean y: 2456806.372168285
[2025-06-05 12:44:49] 2025-06-05 06:04:09,533 | INFO     | -- intersect: -24946894163.886868
[2025-06-05 12:44:49] 2025-06-05 06:04:09,533 | INFO     | intersect: -24946894163.886868
[2025-06-05 12:44:49] 2025-06-05 06:04:09,533 | INFO     | chi2: 6.017747841647491
[2025-06-05 12:44:49] 2025-06-05 06:04:09,533 | INFO     | current chi2=6.017747841647491 (change=10.804060915562328 %)
[2025-06-05 12:44:49] 2025-06-05 06:04:09,533 | INFO     | right removable region: 308
[2025-06-05 12:44:49] 2025-06-05 06:04:09,534 | INFO     | sum of square deviations: 9148487810.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,537 | INFO     | sum of deviations: 2137292563.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,537 | INFO     | mean x: 1749093909.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,537 | INFO     | mean y: 2487537.1488673138
[2025-06-05 12:44:49] 2025-06-05 06:04:09,537 | INFO     | -- intersect: -406140148.7959095
[2025-06-05 12:44:49] 2025-06-05 06:04:09,538 | INFO     | intersect: -406140148.7959095
[2025-06-05 12:44:49] 2025-06-05 06:04:09,538 | INFO     | chi2: 2.012843047825723
[2025-06-05 12:44:49] 2025-06-05 06:04:09,538 | INFO     | current chi2=2.012843047825723 (change=70.16534580630672 %)
[2025-06-05 12:44:49] 2025-06-05 06:04:09,539 | INFO     | sum of square deviations: 8711530780.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,547 | INFO     | sum of deviations: -44183995525.5
[2025-06-05 12:44:49] 2025-06-05 06:04:09,547 | INFO     | mean x: 1749094061.5
[2025-06-05 12:44:49] 2025-06-05 06:04:09,547 | INFO     | mean y: 2503619.759868421
[2025-06-05 12:44:49] 2025-06-05 06:04:09,547 | INFO     | -- intersect: 8873730289.178194
[2025-06-05 12:44:49] 2025-06-05 06:04:09,547 | INFO     | intersect: 8873730289.178194
[2025-06-05 12:44:49] 2025-06-05 06:04:09,548 | INFO     | chi2: 0.9344016462459299
[2025-06-05 12:44:49] 2025-06-05 06:04:09,548 | INFO     | current chi2=0.9344016462459299 (change=53.578017558037004 %)
[2025-06-05 12:44:49] 2025-06-05 06:04:09,549 | INFO     | sum of square deviations: 8288713550.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,551 | INFO     | sum of deviations: -43174130613.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,552 | INFO     | mean x: 1749094214.0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,552 | INFO     | mean y: 2503236.628762542
[2025-06-05 12:44:49] 2025-06-05 06:04:09,552 | INFO     | -- intersect: 9113159744.921124
[2025-06-05 12:44:49] 2025-06-05 06:04:09,552 | INFO     | intersect: 9113159744.921124
[2025-06-05 12:44:49] 2025-06-05 06:04:09,553 | INFO     | chi2: 0.9195757334858391
[2025-06-05 12:44:49] 2025-06-05 06:04:09,553 | INFO     | current chi2=0.9195757334858391 (change=1.5866745119355998 %)
[2025-06-05 12:44:49] 2025-06-05 06:04:09,553 | INFO     | left removable region: 30
[2025-06-05 12:44:49] 2025-06-05 06:04:09,553 | INFO     | sum of square deviations: 6662039329.5
[2025-06-05 12:44:49] 2025-06-05 06:04:09,556 | INFO     | sum of deviations: 9003075705.000004
[2025-06-05 12:44:49] 2025-06-05 06:04:09,556 | INFO     | mean x: 1749094488.5
[2025-06-05 12:44:49] 2025-06-05 06:04:09,556 | INFO     | mean y: 2497891.338129496
[2025-06-05 12:44:49] 2025-06-05 06:04:09,556 | INFO     | -- intersect: -2361227285.9411254
[2025-06-05 12:44:49] 2025-06-05 06:04:09,556 | INFO     | intersect: -2361227285.9411254
[2025-06-05 12:44:49] 2025-06-05 06:04:09,557 | INFO     | chi2: 0.0002960641660513374
[2025-06-05 12:44:49] 2025-06-05 06:04:09,557 | INFO     | -- intersect: -2361227285.9411254
[2025-06-05 12:44:49] 2025-06-05 06:04:09,557 | INFO     | current memory leak: 1.35 B/s (using 278 data points, chi2=0.00)
[2025-06-05 12:44:49] 2025-06-05 06:04:09,558 | INFO     | ..............................
[2025-06-05 12:44:49] 2025-06-05 06:04:09,558 | INFO     | . Timing measurements:
[2025-06-05 12:44:49] 2025-06-05 06:04:09,558 | INFO     | . get job = 0 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,559 | INFO     | . initial setup = 9 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,559 | INFO     | . payload setup = 147 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,559 | INFO     | . stage-in = 0 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,559 | INFO     | . payload execution = 19294 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,559 | INFO     | . stage-out = 3 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,559 | INFO     | . log creation = 1 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,559 | INFO     | ..............................
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | 
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | job summary report
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | --------------------------------------------------
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | PanDA job id: 6666849963
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | task id: 44871837
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | errors: (none)
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:44:49] 2025-06-05 06:04:09,731 | INFO     | pilot state: finished 
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | transexitcode: 0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | exeerrorcode: 0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | exeerrordiag: 
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | exitcode: 0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | exitmsg: OK
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | cpuconsumptiontime: 71252 s
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | nevents: 400
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | neventsw: 0
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | pid: 16062
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | pgrp: 16062
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | corecount: 8
[2025-06-05 12:44:49] 2025-06-05 06:04:09,732 | INFO     | event service: False
[2025-06-05 12:44:49] 2025-06-05 06:04:09,733 | INFO     | sizes: {0: 2396513, 1: 2397198, 2: 2397397, 13: 2397397, 23: 2397453, 34: 2397481, 45: 2397637, 55: 2397665, 66: 2397693, 77: 2397721, 88: 2397777, 96: 2398291, 98
[2025-06-05 12:44:49] 2025-06-05 06:04:09,733 | INFO     | --------------------------------------------------
[2025-06-05 12:44:49] 2025-06-05 06:04:09,733 | INFO     | 
[2025-06-05 12:44:49] 2025-06-05 06:04:09,733 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 12:44:49] 2025-06-05 06:04:10,044 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,044 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,044 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,044 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | job 6666849963 has completed (purged errors)
[2025-06-05 12:44:49] 2025-06-05 06:04:10,046 | INFO     | overall cleanup function is called
[2025-06-05 12:44:49] 2025-06-05 06:04:11,055 | INFO     | --- collectZombieJob: --- 10, [16062]
[2025-06-05 12:44:49] 2025-06-05 06:04:11,056 | INFO     | zombie collector waiting for pid 16062
[2025-06-05 12:44:49] 2025-06-05 06:04:11,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:44:49] 2025-06-05 06:04:11,056 | INFO     | collected zombie processes
[2025-06-05 12:44:49] 2025-06-05 06:04:11,056 | INFO     | will attempt to kill all subprocesses of pid=16062
[2025-06-05 12:44:49] 2025-06-05 06:04:11,184 | INFO     | process IDs to be killed: [16062] (in reverse order)
[2025-06-05 12:44:49] 2025-06-05 06:04:12,150 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:44:49] 2025-06-05 06:04:12,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:44:49] 2025-06-05 06:04:12,154 | INFO     | did not find any defunct processes belonging to 16062
[2025-06-05 12:44:49] 2025-06-05 06:04:12,158 | INFO     | did not find any defunct processes belonging to 16062
[2025-06-05 12:44:49] 2025-06-05 06:04:12,158 | INFO     | ready for new job
[2025-06-05 12:44:49] 2025-06-05 06:04:12,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:44:49] 2025-06-05 06:04:12,164 | INFO     | **************************************
[2025-06-05 12:44:49] 2025-06-05 06:04:12,165 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:44:49] 2025-06-05 06:04:12,165 | INFO     | **************************************
[2025-06-05 12:44:49] 2025-06-05 06:04:12,165 | INFO     | 
[2025-06-05 12:44:49] 2025-06-05 06:04:12,165 | INFO     | pilot is running in a VM
[2025-06-05 12:44:49] 2025-06-05 06:04:12,166 | INFO     | architecture information:
[2025-06-05 12:44:49] 2025-06-05 06:04:12,181 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:44:49] 2025-06-05 06:04:12,483 | INFO     | cat /etc/os-release:
[2025-06-05 12:44:49] NAME="CentOS Linux"
[2025-06-05 12:44:49] VERSION="7 (Core)"
[2025-06-05 12:44:49] ID="centos"
[2025-06-05 12:44:49] ID_LIKE="rhel fedora"
[2025-06-05 12:44:49] VERSION_ID="7"
[2025-06-05 12:44:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:44:49] ANSI_COLOR="0;31"
[2025-06-05 12:44:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:44:49] HOME_URL="https://www.centos.org/"
[2025-06-05 12:44:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:44:49] 
[2025-06-05 12:44:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:44:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:44:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:44:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:44:49] 
[2025-06-05 12:44:49] 2025-06-05 06:04:12,483 | INFO     | **************************************
[2025-06-05 12:44:49] 2025-06-05 06:04:12,987 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 12:44:49] 2025-06-05 06:04:13,178 | INFO     | sufficient remaining disk space (496905486336 B)
[2025-06-05 12:44:49] 2025-06-05 06:04:13,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:44:49] 2025-06-05 06:04:13,179 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:44:49] 2025-06-05 06:04:13,179 | INFO     | update_server=False
[2025-06-05 12:44:49] 2025-06-05 06:04:13,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:44:49] 2025-06-05 06:04:13,181 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:44:49] 2025-06-05 06:04:13,181 | INFO     | aborting loop
[2025-06-05 12:44:49] 2025-06-05 06:04:13,186 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 12:44:49] 2025-06-05 06:04:13,186 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:44:49] 2025-06-05 06:04:13,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:44:49] 2025-06-05 06:04:13,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:44:49] 2025-06-05 06:04:13,192 | INFO     | all data control threads have been joined
[2025-06-05 12:44:49] 2025-06-05 06:04:14,147 | INFO     | all job control threads have been joined
[2025-06-05 12:44:49] 2025-06-05 06:04:14,185 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:14,187 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:14,198 | INFO     | [data] control thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:14,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:44:49] 2025-06-05 06:04:14,284 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:14,353 | INFO     | [job] validate thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:14,424 | INFO     | all payload control threads have been joined
[2025-06-05 12:44:49] 2025-06-05 06:04:14,576 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:14,747 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:44:49] 2025-06-05 06:04:14,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:44:49] 2025-06-05 06:04:15,154 | INFO     | [job] control thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:15,160 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:15,210 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:15,326 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:15,339 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:15,431 | INFO     | [payload] control thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:15,735 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:15,754 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:16,244 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:18,928 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:44:49] 2025-06-05 06:04:20,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139674633033536)>', '<ExcThread(monitor, started 139674181940992)>']
[2025-06-05 12:44:49] 2025-06-05 06:04:21,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:44:49] 2025-06-05 06:04:21,240 | INFO     | [monitor] control thread has ended
[2025-06-05 12:44:49] 2025-06-05 06:04:25,860 | INFO     | all workflow threads have been joined
[2025-06-05 12:44:49] 2025-06-05 06:04:25,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:44:49] 2025-06-05 06:04:25,860 | INFO     | traces error code: 0
[2025-06-05 12:44:49] 2025-06-05 06:04:25,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:44:49] 2025-06-05 06:04:26,221 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:44:49] 2025-06-05 06:04:26,322 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:44:49] 2025-06-05 06:04:26,414 [wrapper] pilotpid: 7470
[2025-06-05 12:44:49] 2025-06-05 06:04:26,489 [wrapper] Pilot exit status: 0
[2025-06-05 12:44:49] 2025-06-05 06:04:26,865 [wrapper] pandaids: 6666849963
[2025-06-05 12:44:49] 2025-06-05 06:04:27,805 [wrapper] cleanup supervisor_pilot 22383 7471
[2025-06-05 12:44:49] 2025-06-05 06:04:27,863 [wrapper] Test setup, not cleaning
[2025-06-05 12:44:49] 2025-06-05 06:04:27,959 [wrapper] apfmon messages muted
[2025-06-05 12:44:49] 2025-06-05 06:04:28,012 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:44:49] 2025-06-05 06:04:28,121 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:44:49]  *** Error codes and diagnostics ***
[2025-06-05 12:44:49]     "exeErrorCode": 0,
[2025-06-05 12:44:49]     "exeErrorDiag": "",
[2025-06-05 12:44:49]     "pilotErrorCode": 0,
[2025-06-05 12:44:49]     "pilotErrorDiag": "",
[2025-06-05 12:44:49]  *** Listing of results directory ***
[2025-06-05 12:44:49] total 411788
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc      5111 May 27 09:53 queuedata.json
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc    495897 May 27 09:53 pilot3.tar.gz
[2025-06-05 12:44:49] -rwx------. 1 boinc boinc     37140 May 27 09:55 runpilot2-wrapper.sh
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc       100 Jun  5 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:44:49] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 02:18 run_atlas
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc       105 Jun  5 02:18 job.xml
[2025-06-05 12:44:49] -rw-r--r--. 2 boinc boinc 223631911 Jun  5 02:18 EVNT.44871834._002535.pool.root.1
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc      6391 Jun  5 02:18 init_data.xml
[2025-06-05 12:44:49] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:18 start_atlas.sh
[2025-06-05 12:44:49] drwxrwx--x. 2 boinc boinc        68 Jun  5 02:18 shared
[2025-06-05 12:44:49] -rw-r--r--. 2 boinc boinc    508875 Jun  5 02:18 input.tar.gz
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc         0 Jun  5 02:18 boinc_lockfile
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc      2558 Jun  5 02:32 pandaJob.out
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc    987117 Jun  5 02:35 agis_schedconf.cvmfs.json
[2025-06-05 12:44:49] drwx------. 4 boinc boinc      4096 Jun  5 02:35 pilot3
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc 190038683 Jun  5 08:01 HITS.44871837._064327.pool.root.1
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc       531 Jun  5 08:01 boinc_task_state.xml
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc      1020 Jun  5 08:02 memory_monitor_summary.json
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc   1598969 Jun  5 08:02 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc    425886 Jun  5 08:02 log.44871837._064327.job.log.tgz.1
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc        95 Jun  5 08:04 pilot_heartbeat.json
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc      7691 Jun  5 08:04 heartbeat.json
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc      4539 Jun  5 08:04 pilotlog.txt
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc   1665607 Jun  5 08:04 log.44871837._064327.job.log.1
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc       357 Jun  5 08:04 output.list
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc       620 Jun  5 08:04 runtime_log
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc   2109440 Jun  5 08:04 result.tar.gz
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc      8659 Jun  5 08:04 runtime_log.err
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc       657 Jun  5 08:04 0JeKDmjK4d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmssYKDmfTbeJn.diag
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc      8192 Jun  5 12:44 boinc_mmap_file
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc        28 Jun  5 12:44 wrapper_checkpoint.txt
[2025-06-05 12:44:49] -rw-r--r--. 1 boinc boinc     20509 Jun  5 12:44 stderr.txt
[2025-06-05 12:44:49] HITS file was successfully produced:
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc 190038683 Jun  5 08:01 shared/HITS.pool.root.1
[2025-06-05 12:44:49]  *** Contents of shared directory: ***
[2025-06-05 12:44:49] total 406556
[2025-06-05 12:44:49] -rw-r--r--. 2 boinc boinc 223631911 Jun  5 02:18 ATLAS.root_0
[2025-06-05 12:44:49] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:18 start_atlas.sh
[2025-06-05 12:44:49] -rw-r--r--. 2 boinc boinc    508875 Jun  5 02:18 input.tar.gz
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc 190038683 Jun  5 08:01 HITS.pool.root.1
[2025-06-05 12:44:49] -rw-------. 1 boinc boinc   2109440 Jun  5 08:04 result.tar.gz
12:44:51 (25693): run_atlas exited; CPU time 71518.439314
12:44:51 (25693): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN