Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:20:04 (2643760): wrapper (7.7.26015): starting
10:20:04 (2643760): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:20:04] Arguments: --nthreads 8
[2025-06-04 10:20:04] Threads: 8
[2025-06-04 10:20:04] Checking for CVMFS
[2025-06-04 10:20:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:20:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:20:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:20:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:20:05] 2.12.6.0 9255 31612 591264 146781 1 459 29968220 32947200 11407 16776704 1 169731329 99.664 144577514 26929 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 10:20:05] CVMFS is ok
[2025-06-04 10:20:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:20:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:20:05] Further information can be found at the LHC@home message board.
[2025-06-04 10:20:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:20:05] Checking for apptainer binary...
[2025-06-04 10:20:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:20:05] Running /usr/bin/apptainer --version
[2025-06-04 10:20:05] apptainer version 1.4.1-1.el9
[2025-06-04 10:20:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:20:05] c6-6-8-1.aglt2.org
[2025-06-04 10:20:05] apptainer works
[2025-06-04 10:20:05] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:20:05] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:20:05] Starting ATLAS job with PandaID=6679772877
[2025-06-04 10:20:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:34:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:34:08]  filesize=306528
[2025-06-04 11:34:08]  filetype=log
[2025-06-04 11:34:08]  guid=5aef67c0-97f5-4fe6-ae77-e32342a4f2e2
[2025-06-04 11:34:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 11:34:08]  is_altstaged=None
[2025-06-04 11:34:08]  is_tar=False
[2025-06-04 11:34:08]  lfn=log.45006595._056695.job.log.tgz.1
[2025-06-04 11:34:08]  mtime=0
[2025-06-04 11:34:08]  protocol_id=None
[2025-06-04 11:34:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:34:08]  replicas=None
[2025-06-04 11:34:08]  scope=mc23_13p6TeV
[2025-06-04 11:34:08]  status=None
[2025-06-04 11:34:08]  status_code=0
[2025-06-04 11:34:08]  storage_token=
[2025-06-04 11:34:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679772877/log.45006595._056695.job.log.tgz.1
[2025-06-04 11:34:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/63/log.45006595._056695.job.log.tgz.1
[2025-06-04 11:34:08]  workdir=None
[2025-06-04 11:34:08] ]
[2025-06-04 11:34:08] 2025-06-04 15:33:52,902 | INFO     | transferring file log.45006595._056695.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679772877/log.45006595._056695.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:34:08] 2025-06-04 15:33:52,902 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679772877/log.45006595._056695.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._056695.job
[2025-06-04 11:34:08] 2025-06-04 15:33:52,921 | INFO     | adding to output.list: log.45006595._056695.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/63/log.45006595._056695.job.log.tg
[2025-06-04 11:34:08] 2025-06-04 15:33:52,922 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:34:08] 2025-06-04 15:33:52,922 | INFO     | summary of transferred files:
[2025-06-04 11:34:08] 2025-06-04 15:33:52,922 | INFO     |  -- lfn=log.45006595._056695.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:34:08] 2025-06-04 15:33:52,922 | INFO     | stage-out finished correctly
[2025-06-04 11:34:08] 2025-06-04 15:33:53,255 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:34:08] 2025-06-04 15:33:53,572 | INFO     | monitor loop #327: job 0:6679772877 is in state 'finished'
[2025-06-04 11:34:08] 2025-06-04 15:33:53,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:34:08] 2025-06-04 15:33:54,108 | INFO     | job 6679772877 has state=finished
[2025-06-04 11:34:08] 2025-06-04 15:33:54,108 | INFO     | preparing for final server update for job 6679772877 in state='finished'
[2025-06-04 11:34:08] 2025-06-04 15:33:54,109 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:34:08] 2025-06-04 15:33:54,109 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:34:08] 2025-06-04 15:33:54,109 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:34:08] 2025-06-04 15:33:54,109 | INFO     | job 6679772877 has finished - writing final server update
[2025-06-04 11:34:08] 2025-06-04 15:33:54,110 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:34:08] 2025-06-04 15:33:54,127 | INFO     | executing command: lscpu
[2025-06-04 11:34:08] 2025-06-04 15:33:54,213 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:34:08] 2025-06-04 15:33:56,075 | INFO     | monitor loop #328: job 0:6679772877 is in state 'finished'
[2025-06-04 11:34:08] 2025-06-04 15:33:56,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:34:08] 2025-06-04 15:33:56,665 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:34:08] 2025-06-04 15:33:56,666 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679772877/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:34:08] 2025-06-04 15:33:56,667 | INFO     | extracted standard info from prmon json
[2025-06-04 11:34:08] 2025-06-04 15:33:56,667 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:34:08] 2025-06-04 15:33:56,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:34:08] 2025-06-04 15:33:56,668 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:34:08] 2025-06-04 15:33:56,668 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:34:08] 2025-06-04 15:33:56,669 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:34:08] 2025-06-04 15:33:56,670 | INFO     | sum of square deviations: 89127252.5
[2025-06-04 11:34:08] 2025-06-04 15:33:56,670 | INFO     | sum of deviations: 9242398285.999998
[2025-06-04 11:34:08] 2025-06-04 15:33:56,670 | INFO     | mean x: 1749049123.5
[2025-06-04 11:34:08] 2025-06-04 15:33:56,670 | INFO     | mean y: 2127138.727272727
[2025-06-04 11:34:08] 2025-06-04 15:33:56,670 | INFO     | -- intersect: -181372347757.8954
[2025-06-04 11:34:08] 2025-06-04 15:33:56,670 | INFO     | intersect: -181372347757.8954
[2025-06-04 11:34:08] 2025-06-04 15:33:56,670 | INFO     | chi2: 0.9730332352940583
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | -- intersect: -181372347757.8954
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | current memory leak: 103.70 B/s (using 66 data points, chi2=0.97)
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | ..............................
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | . Timing measurements:
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | . get job = 0 s
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | . initial setup = 2 s
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | . payload setup = 4 s
[2025-06-04 11:34:08] 2025-06-04 15:33:56,671 | INFO     | . stage-in = 0 s
[2025-06-04 11:34:08] 2025-06-04 15:33:56,672 | INFO     | . payload execution = 4395 s
[2025-06-04 11:34:08] 2025-06-04 15:33:56,672 | INFO     | . stage-out = 0 s
[2025-06-04 11:34:08] 2025-06-04 15:33:56,672 | INFO     | . log creation = 0 s
[2025-06-04 11:34:08] 2025-06-04 15:33:56,672 | INFO     | ..............................
[2025-06-04 11:34:08] 2025-06-04 15:33:56,978 | INFO     | 4425s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 11:34:08] 2025-06-04 15:33:57,162 | INFO     | 
[2025-06-04 11:34:08] 2025-06-04 15:33:57,162 | INFO     | job summary report
[2025-06-04 11:34:08] 2025-06-04 15:33:57,162 | INFO     | --------------------------------------------------
[2025-06-04 11:34:08] 2025-06-04 15:33:57,162 | INFO     | PanDA job id: 6679772877
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | task id: 45006595
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | errors: (none)
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | pilot state: finished 
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | transexitcode: 0
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | exeerrorcode: 0
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | exeerrordiag: 
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | exitcode: 0
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | exitmsg: OK
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | cpuconsumptiontime: 29813 s
[2025-06-04 11:34:08] 2025-06-04 15:33:57,163 | INFO     | nevents: 400
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | neventsw: 0
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | pid: 2660066
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | pgrp: 2660066
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | corecount: 8
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | event service: False
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | sizes: {0: 2397120, 1: 2397319, 5: 2397525, 12: 2397581, 4403: 2423640, 4404: 2432765, 4408: 2432879}
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | --------------------------------------------------
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | 
[2025-06-04 11:34:08] 2025-06-04 15:33:57,164 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:34:08] 2025-06-04 15:33:57,181 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,181 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,181 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,181 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:34:08] 2025-06-04 15:33:57,183 | INFO     | job 6679772877 has completed (purged errors)
[2025-06-04 11:34:08] 2025-06-04 15:33:57,183 | INFO     | overall cleanup function is called
[2025-06-04 11:34:08] 2025-06-04 15:33:58,190 | INFO     | --- collectZombieJob: --- 10, [2660066]
[2025-06-04 11:34:08] 2025-06-04 15:33:58,191 | INFO     | zombie collector waiting for pid 2660066
[2025-06-04 11:34:08] 2025-06-04 15:33:58,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:34:08] 2025-06-04 15:33:58,191 | INFO     | collected zombie processes
[2025-06-04 11:34:08] 2025-06-04 15:33:58,191 | INFO     | will attempt to kill all subprocesses of pid=2660066
[2025-06-04 11:34:08] 2025-06-04 15:33:58,399 | INFO     | process IDs to be killed: [2660066] (in reverse order)
[2025-06-04 11:34:08] 2025-06-04 15:33:58,467 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:34:08] 2025-06-04 15:33:58,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:34:08] 2025-06-04 15:33:58,480 | INFO     | did not find any defunct processes belonging to 2660066
[2025-06-04 11:34:08] 2025-06-04 15:33:58,492 | INFO     | did not find any defunct processes belonging to 2660066
[2025-06-04 11:34:08] 2025-06-04 15:33:58,493 | INFO     | ready for new job
[2025-06-04 11:34:08] 2025-06-04 15:33:58,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:34:08] 2025-06-04 15:33:58,495 | INFO     | **************************************
[2025-06-04 11:34:08] 2025-06-04 15:33:58,495 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:34:08] 2025-06-04 15:33:58,495 | INFO     | **************************************
[2025-06-04 11:34:08] 2025-06-04 15:33:58,495 | INFO     | 
[2025-06-04 11:34:08] 2025-06-04 15:33:58,512 | INFO     | architecture information:
[2025-06-04 11:34:08] 2025-06-04 15:33:58,513 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:34:08] 2025-06-04 15:33:58,528 | INFO     | cat /etc/os-release:
[2025-06-04 11:34:08] NAME="CentOS Linux"
[2025-06-04 11:34:08] VERSION="7 (Core)"
[2025-06-04 11:34:08] ID="centos"
[2025-06-04 11:34:08] ID_LIKE="rhel fedora"
[2025-06-04 11:34:08] VERSION_ID="7"
[2025-06-04 11:34:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:34:08] ANSI_COLOR="0;31"
[2025-06-04 11:34:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:34:08] HOME_URL="https://www.centos.org/"
[2025-06-04 11:34:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:34:08] 
[2025-06-04 11:34:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:34:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:34:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:34:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:34:08] 
[2025-06-04 11:34:08] 2025-06-04 15:33:58,528 | INFO     | **************************************
[2025-06-04 11:34:08] 2025-06-04 15:33:59,031 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:34:08] 2025-06-04 15:33:59,048 | INFO     | sufficient remaining disk space (75416731648 B)
[2025-06-04 11:34:08] 2025-06-04 15:33:59,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:34:08] 2025-06-04 15:33:59,049 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:34:08] 2025-06-04 15:33:59,049 | INFO     | update_server=False
[2025-06-04 11:34:08] 2025-06-04 15:33:59,049 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:34:08] 2025-06-04 15:33:59,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:34:08] 2025-06-04 15:33:59,347 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:34:08] 2025-06-04 15:33:59,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:34:08] 2025-06-04 15:33:59,584 | INFO     | aborting loop
[2025-06-04 11:34:08] 2025-06-04 15:33:59,623 | INFO     | all payload control threads have been joined
[2025-06-04 11:34:08] 2025-06-04 15:33:59,988 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:34:08] 2025-06-04 15:33:59,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:34:08] 2025-06-04 15:33:59,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:34:08] 2025-06-04 15:34:00,010 | INFO     | all data control threads have been joined
[2025-06-04 11:34:08] 2025-06-04 15:34:00,054 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:00,065 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:00,098 | INFO     | all job control threads have been joined
[2025-06-04 11:34:08] 2025-06-04 15:34:00,307 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:00,530 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:00,586 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:00,628 | INFO     | [payload] control thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:00,971 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,016 | INFO     | [data] control thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,054 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,084 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,103 | INFO     | [job] control thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,160 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,283 | INFO     | [job] validate thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,303 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:01,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:34:08] 2025-06-04 15:34:02,774 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:03,351 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:34:08] 2025-06-04 15:34:03,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528315455296)>', '<ExcThread(monitor, started 140527680866048)>']
[2025-06-04 11:34:08] 2025-06-04 15:34:04,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:34:08] 2025-06-04 15:34:04,009 | INFO     | [monitor] control thread has ended
[2025-06-04 11:34:08] 2025-06-04 15:34:08,659 | INFO     | all workflow threads have been joined
[2025-06-04 11:34:08] 2025-06-04 15:34:08,660 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:34:08] 2025-06-04 15:34:08,660 | INFO     | traces error code: 0
[2025-06-04 11:34:08] 2025-06-04 15:34:08,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:34:08] 2025-06-04 15:34:08,806 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:34:08] 2025-06-04 15:34:08,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:34:08] 2025-06-04 15:34:08,811 [wrapper] pilotpid: 2647394
[2025-06-04 11:34:08] 2025-06-04 15:34:08,814 [wrapper] Pilot exit status: 0
[2025-06-04 11:34:08] 2025-06-04 15:34:08,824 [wrapper] pandaids: 6679772877
[2025-06-04 11:34:08] 2025-06-04 15:34:08,894 [wrapper] cleanup supervisor_pilot 2817465 2647395
[2025-06-04 11:34:08] 2025-06-04 15:34:08,896 [wrapper] Test setup, not cleaning
[2025-06-04 11:34:08] 2025-06-04 15:34:08,899 [wrapper] apfmon messages muted
[2025-06-04 11:34:08] 2025-06-04 15:34:08,902 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:34:08] 2025-06-04 15:34:08,904 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:34:08]  *** Error codes and diagnostics ***
[2025-06-04 11:34:08]     "exeErrorCode": 0,
[2025-06-04 11:34:08]     "exeErrorDiag": "",
[2025-06-04 11:34:08]     "pilotErrorCode": 0,
[2025-06-04 11:34:08]     "pilotErrorDiag": "",
[2025-06-04 11:34:08]  *** Listing of results directory ***
[2025-06-04 11:34:08] total 392872
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 09:47 pilot3.tar.gz
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 10:06 queuedata.json
[2025-06-04 11:34:08] -rwx------ 1 boincer umatlas     37140 Jun  4 10:08 runpilot2-wrapper.sh
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas       100 Jun  4 10:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:34:08] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 10:20 run_atlas
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas       105 Jun  4 10:20 job.xml
[2025-06-04 11:34:08] -rw-r--r-- 2 boincer umatlas 218107370 Jun  4 10:20 EVNT.45006593._001575.pool.root.1
[2025-06-04 11:34:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:20 start_atlas.sh
[2025-06-04 11:34:08] drwxrwx--x 2 boincer umatlas      4096 Jun  4 10:20 shared
[2025-06-04 11:34:08] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 10:20 input.tar.gz
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas         0 Jun  4 10:20 boinc_lockfile
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas      2524 Jun  4 10:20 pandaJob.out
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas    986819 Jun  4 10:20 agis_schedconf.cvmfs.json
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas   1598969 Jun  4 10:20 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:34:08] drwx------ 4 boincer umatlas      4096 Jun  4 10:20 pilot3
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas      6856 Jun  4 11:27 init_data.xml
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas 178883193 Jun  4 11:33 HITS.45006595._056695.pool.root.1
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas       529 Jun  4 11:33 boinc_task_state.xml
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas      1044 Jun  4 11:33 memory_monitor_summary.json
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas        95 Jun  4 11:33 pilot_heartbeat.json
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas    306528 Jun  4 11:33 log.45006595._056695.job.log.tgz.1
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas      7710 Jun  4 11:33 heartbeat.json
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas        27 Jun  4 11:34 wrapper_checkpoint.txt
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 11:34 boinc_mmap_file
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas      4353 Jun  4 11:34 pilotlog.txt
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas    436309 Jun  4 11:34 log.45006595._056695.job.log.1
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas       357 Jun  4 11:34 output.list
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas       620 Jun  4 11:34 runtime_log
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas    757760 Jun  4 11:34 result.tar.gz
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 11:34 runtime_log.err
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas       651 Jun  4 11:34 kMNLDmUy3g7n9Rq4apOajLDm4fhM0noT9bVof3QYDmM3aKDmG8OSJm.diag
[2025-06-04 11:34:08] -rw-r--r-- 1 boincer umatlas     21142 Jun  4 11:34 stderr.txt
[2025-06-04 11:34:08] HITS file was successfully produced:
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas 178883193 Jun  4 11:33 shared/HITS.pool.root.1
[2025-06-04 11:34:08]  *** Contents of shared directory: ***
[2025-06-04 11:34:08] total 388952
[2025-06-04 11:34:08] -rw-r--r-- 2 boincer umatlas 218107370 Jun  4 10:20 ATLAS.root_0
[2025-06-04 11:34:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:20 start_atlas.sh
[2025-06-04 11:34:08] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 10:20 input.tar.gz
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas 178883193 Jun  4 11:33 HITS.pool.root.1
[2025-06-04 11:34:08] -rw------- 1 boincer umatlas    757760 Jun  4 11:34 result.tar.gz
11:34:10 (2643760): run_atlas exited; CPU time 29986.103446
11:34:10 (2643760): called boinc_finish(0)

</stderr_txt>
]]>

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