Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:17:58 (98240): wrapper (7.7.26015): starting
10:17:58 (98240): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:17:58] Arguments: --nthreads 8
[2025-06-04 10:17:58] Threads: 8
[2025-06-04 10:17:58] Checking for CVMFS
[2025-06-04 10:17:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:17:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:17:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:17:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:17:59] 2.11.2.0 72091 1234 130040 146781 2 445 18367713 18432000 13797 130560 0 20217632 99.895 3817677 75226 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 10:17:59] CVMFS is ok
[2025-06-04 10:17:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:17:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:17:59] Further information can be found at the LHC@home message board.
[2025-06-04 10:17:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:17:59] Checking for apptainer binary...
[2025-06-04 10:17:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:17:59] Running /usr/bin/apptainer --version
[2025-06-04 10:17:59] apptainer version 1.3.2-1.el7
[2025-06-04 10:17:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:18:00] c-212-4.aglt2.org
[2025-06-04 10:18:00] apptainer works
[2025-06-04 10:18:00] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:18:00] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:18:01] Starting ATLAS job with PandaID=6679682207
[2025-06-04 10:18:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:49:46]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:49:46]  filesize=318669
[2025-06-04 11:49:46]  filetype=log
[2025-06-04 11:49:46]  guid=47affb44-105a-4ccd-bad3-8e37fe2047bb
[2025-06-04 11:49:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 11:49:46]  is_altstaged=None
[2025-06-04 11:49:46]  is_tar=False
[2025-06-04 11:49:46]  lfn=log.44871837._102212.job.log.tgz.1
[2025-06-04 11:49:46]  mtime=0
[2025-06-04 11:49:46]  protocol_id=None
[2025-06-04 11:49:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:49:46]  replicas=None
[2025-06-04 11:49:46]  scope=mc23_13p6TeV
[2025-06-04 11:49:46]  status=None
[2025-06-04 11:49:46]  status_code=0
[2025-06-04 11:49:46]  storage_token=
[2025-06-04 11:49:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679682207/log.44871837._102212.job.log.tgz.1
[2025-06-04 11:49:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/6c/log.44871837._102212.job.log.tgz.1
[2025-06-04 11:49:46]  workdir=None
[2025-06-04 11:49:46] ]
[2025-06-04 11:49:46] 2025-06-04 15:49:30,501 | INFO     | transferring file log.44871837._102212.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679682207/log.44871837._102212.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:49:46] 2025-06-04 15:49:30,501 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679682207/log.44871837._102212.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._102212.job
[2025-06-04 11:49:46] 2025-06-04 15:49:30,516 | INFO     | adding to output.list: log.44871837._102212.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/6c/log.44871837._102212.job.log.tg
[2025-06-04 11:49:46] 2025-06-04 15:49:30,517 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:49:46] 2025-06-04 15:49:30,517 | INFO     | summary of transferred files:
[2025-06-04 11:49:46] 2025-06-04 15:49:30,517 | INFO     |  -- lfn=log.44871837._102212.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:49:46] 2025-06-04 15:49:30,517 | INFO     | stage-out finished correctly
[2025-06-04 11:49:46] 2025-06-04 15:49:30,556 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:49:46] 2025-06-04 15:49:31,062 | INFO     | job 6679682207 has state=finished
[2025-06-04 11:49:46] 2025-06-04 15:49:31,062 | INFO     | preparing for final server update for job 6679682207 in state='finished'
[2025-06-04 11:49:46] 2025-06-04 15:49:31,063 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:49:46] 2025-06-04 15:49:31,063 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:49:46] 2025-06-04 15:49:31,063 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:49:46] 2025-06-04 15:49:31,063 | INFO     | job 6679682207 has finished - writing final server update
[2025-06-04 11:49:46] 2025-06-04 15:49:31,063 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:49:46] 2025-06-04 15:49:31,065 | INFO     | executing command: lscpu
[2025-06-04 11:49:46] 2025-06-04 15:49:31,094 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:49:46] 2025-06-04 15:49:31,900 | INFO     | monitor loop #417: job 0:6679682207 is in state 'finished'
[2025-06-04 11:49:46] 2025-06-04 15:49:31,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:49:46] 2025-06-04 15:49:32,311 | INFO     | PID=4246 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 11:49:46] 2025-06-04 15:49:32,311 | INFO     | .. there are 13 such processes running
[2025-06-04 11:49:46] 2025-06-04 15:49:33,127 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 11:49:46] 2025-06-04 15:49:33,128 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679682207/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:49:46] 2025-06-04 15:49:33,128 | INFO     | extracted standard info from prmon json
[2025-06-04 11:49:46] 2025-06-04 15:49:33,128 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:49:46] 2025-06-04 15:49:33,128 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:49:46] 2025-06-04 15:49:33,128 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:49:46] 2025-06-04 15:49:33,128 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:49:46] 2025-06-04 15:49:33,129 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:49:46] 2025-06-04 15:49:33,129 | INFO     | sum of square deviations: 170944600.5
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | sum of deviations: 1180673757.5
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | mean x: 1749049553.5
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | mean y: 2497104.963414634
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | -- intersect: -12077772773.958805
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | intersect: -12077772773.958805
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | chi2: 0.004176256459015313
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | -- intersect: -12077772773.958805
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | current memory leak: 6.91 B/s (using 82 data points, chi2=0.00)
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | ..............................
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . Timing measurements:
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . get job = 0 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . initial setup = 2 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . payload setup = 18 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . stage-in = 0 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . payload execution = 5402 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . stage-out = 0 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | . log creation = 0 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,130 | INFO     | ..............................
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | 
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | job summary report
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | --------------------------------------------------
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | PanDA job id: 6679682207
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | task id: 44871837
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | errors: (none)
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | pilot state: finished 
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | transexitcode: 0
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | exeerrorcode: 0
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | exeerrordiag: 
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | exitcode: 0
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | exitmsg: OK
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | cpuconsumptiontime: 37857 s
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | nevents: 400
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | neventsw: 0
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | pid: 11723
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | pgrp: 11723
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | corecount: 8
[2025-06-04 11:49:46] 2025-06-04 15:49:33,167 | INFO     | event service: False
[2025-06-04 11:49:46] 2025-06-04 15:49:33,168 | INFO     | sizes: {0: 2397291, 11: 2397291, 15: 2397525, 21: 2397553, 5425: 2424043, 5426: 2433168, 5428: 2433282}
[2025-06-04 11:49:46] 2025-06-04 15:49:33,168 | INFO     | --------------------------------------------------
[2025-06-04 11:49:46] 2025-06-04 15:49:33,168 | INFO     | 
[2025-06-04 11:49:46] 2025-06-04 15:49:33,168 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | job 6679682207 has completed (purged errors)
[2025-06-04 11:49:46] 2025-06-04 15:49:33,186 | INFO     | overall cleanup function is called
[2025-06-04 11:49:46] 2025-06-04 15:49:34,192 | INFO     | --- collectZombieJob: --- 10, [11723]
[2025-06-04 11:49:46] 2025-06-04 15:49:34,193 | INFO     | zombie collector waiting for pid 11723
[2025-06-04 11:49:46] 2025-06-04 15:49:34,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:49:46] 2025-06-04 15:49:34,193 | INFO     | collected zombie processes
[2025-06-04 11:49:46] 2025-06-04 15:49:34,193 | INFO     | will attempt to kill all subprocesses of pid=11723
[2025-06-04 11:49:46] 2025-06-04 15:49:34,308 | INFO     | process IDs to be killed: [11723] (in reverse order)
[2025-06-04 11:49:46] 2025-06-04 15:49:34,356 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:49:46] 2025-06-04 15:49:34,356 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:49:46] 2025-06-04 15:49:34,360 | INFO     | did not find any defunct processes belonging to 11723
[2025-06-04 11:49:46] 2025-06-04 15:49:34,364 | INFO     | did not find any defunct processes belonging to 11723
[2025-06-04 11:49:46] 2025-06-04 15:49:34,364 | INFO     | ready for new job
[2025-06-04 11:49:46] 2025-06-04 15:49:34,364 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:49:46] 2025-06-04 15:49:34,364 | INFO     | **************************************
[2025-06-04 11:49:46] 2025-06-04 15:49:34,365 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:49:46] 2025-06-04 15:49:34,365 | INFO     | **************************************
[2025-06-04 11:49:46] 2025-06-04 15:49:34,365 | INFO     | 
[2025-06-04 11:49:46] 2025-06-04 15:49:34,367 | INFO     | architecture information:
[2025-06-04 11:49:46] 2025-06-04 15:49:34,367 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:49:46] 2025-06-04 15:49:34,379 | INFO     | cat /etc/os-release:
[2025-06-04 11:49:46] NAME="CentOS Linux"
[2025-06-04 11:49:46] VERSION="7 (Core)"
[2025-06-04 11:49:46] ID="centos"
[2025-06-04 11:49:46] ID_LIKE="rhel fedora"
[2025-06-04 11:49:46] VERSION_ID="7"
[2025-06-04 11:49:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:49:46] ANSI_COLOR="0;31"
[2025-06-04 11:49:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:49:46] HOME_URL="https://www.centos.org/"
[2025-06-04 11:49:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:49:46] 
[2025-06-04 11:49:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:49:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:49:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:49:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:49:46] 
[2025-06-04 11:49:46] 2025-06-04 15:49:34,379 | INFO     | **************************************
[2025-06-04 11:49:46] 2025-06-04 15:49:34,882 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:49:46] 2025-06-04 15:49:34,892 | INFO     | sufficient remaining disk space (106241720320 B)
[2025-06-04 11:49:46] 2025-06-04 15:49:34,892 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:49:46] 2025-06-04 15:49:34,892 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:49:46] 2025-06-04 15:49:34,892 | INFO     | update_server=False
[2025-06-04 11:49:46] 2025-06-04 15:49:34,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:49:46] 2025-06-04 15:49:34,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:49:46] 2025-06-04 15:49:34,893 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:49:46] 2025-06-04 15:49:34,893 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:49:46] 2025-06-04 15:49:34,893 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:49:46] 2025-06-04 15:49:34,893 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:49:46] 2025-06-04 15:49:34,907 | INFO     | all payload control threads have been joined
[2025-06-04 11:49:46] 2025-06-04 15:49:35,266 | INFO     | all job control threads have been joined
[2025-06-04 11:49:46] 2025-06-04 15:49:35,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:49:46] 2025-06-04 15:49:35,408 | INFO     | aborting loop
[2025-06-04 11:49:46] 2025-06-04 15:49:35,567 | INFO     | all data control threads have been joined
[2025-06-04 11:49:46] 2025-06-04 15:49:35,898 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:35,898 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:35,912 | INFO     | [payload] control thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:35,971 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,017 | INFO     | [job] validate thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,049 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:49:46] 2025-06-04 15:49:36,127 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,252 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,272 | INFO     | [job] control thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,404 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,412 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,572 | INFO     | [data] control thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:36,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:49:46] 2025-06-04 15:49:36,872 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:37,312 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:38,069 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:40,602 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:49:46] 2025-06-04 15:49:41,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140565046572864)>', '<ExcThread(monitor, started 140564456523520)>']
[2025-06-04 11:49:46] 2025-06-04 15:49:41,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:49:46] 2025-06-04 15:49:41,925 | INFO     | [monitor] control thread has ended
[2025-06-04 11:49:46] 2025-06-04 15:49:46,172 | INFO     | all workflow threads have been joined
[2025-06-04 11:49:46] 2025-06-04 15:49:46,173 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:49:46] 2025-06-04 15:49:46,173 | INFO     | traces error code: 0
[2025-06-04 11:49:46] 2025-06-04 15:49:46,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:49:46] 2025-06-04 15:49:46,232 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:49:46] 2025-06-04 15:49:46,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:49:46] 2025-06-04 15:49:46,235 [wrapper] pilotpid: 4246
[2025-06-04 11:49:46] 2025-06-04 15:49:46,236 [wrapper] Pilot exit status: 0
[2025-06-04 11:49:46] 2025-06-04 15:49:46,241 [wrapper] pandaids: 6679682207
[2025-06-04 11:49:46] 2025-06-04 15:49:46,277 [wrapper] cleanup supervisor_pilot 37348 4247
[2025-06-04 11:49:46] 2025-06-04 15:49:46,279 [wrapper] Test setup, not cleaning
[2025-06-04 11:49:46] 2025-06-04 15:49:46,281 [wrapper] apfmon messages muted
[2025-06-04 11:49:46] 2025-06-04 15:49:46,283 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:49:46] 2025-06-04 15:49:46,284 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:49:46]  *** Error codes and diagnostics ***
[2025-06-04 11:49:46]     "exeErrorCode": 0,
[2025-06-04 11:49:46]     "exeErrorDiag": "",
[2025-06-04 11:49:46]     "pilotErrorCode": 0,
[2025-06-04 11:49:46]     "pilotErrorDiag": "",
[2025-06-04 11:49:46]  *** Listing of results directory ***
[2025-06-04 11:49:46] total 420532
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 08:18 pilot3.tar.gz
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 08:22 queuedata.json
[2025-06-04 11:49:46] -rwx------ 1 boincer umatlas     37140 Jun  4 08:22 runpilot2-wrapper.sh
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas       100 Jun  4 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:49:46] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 10:17 run_atlas
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas       105 Jun  4 10:17 job.xml
[2025-06-04 11:49:46] -rw-r--r-- 2 boincer umatlas 223401875 Jun  4 10:17 EVNT.44871834._003804.pool.root.1
[2025-06-04 11:49:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:17 start_atlas.sh
[2025-06-04 11:49:46] drwxrwx--x 2 boincer umatlas      4096 Jun  4 10:17 shared
[2025-06-04 11:49:46] -rw-r--r-- 2 boincer umatlas    508887 Jun  4 10:17 input.tar.gz
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas         0 Jun  4 10:17 boinc_lockfile
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas      2558 Jun  4 10:18 pandaJob.out
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas    986819 Jun  4 10:18 agis_schedconf.cvmfs.json
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas   1598969 Jun  4 10:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:49:46] drwx------ 4 boincer umatlas      4096 Jun  4 10:18 pilot3
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas      6386 Jun  4 11:46 init_data.xml
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas        95 Jun  4 11:48 pilot_heartbeat.json
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas 201692888 Jun  4 11:49 HITS.44871837._102212.pool.root.1
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas       529 Jun  4 11:49 boinc_task_state.xml
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas      1085 Jun  4 11:49 memory_monitor_summary.json
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas    318669 Jun  4 11:49 log.44871837._102212.job.log.tgz.1
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas      7734 Jun  4 11:49 heartbeat.json
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 11:49 boinc_mmap_file
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas        27 Jun  4 11:49 wrapper_checkpoint.txt
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas      4477 Jun  4 11:49 pilotlog.txt
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas    531475 Jun  4 11:49 log.44871837._102212.job.log.1
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas       357 Jun  4 11:49 output.list
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas       620 Jun  4 11:49 runtime_log
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas    870400 Jun  4 11:49 result.tar.gz
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 11:49 runtime_log.err
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas       657 Jun  4 11:49 iPlMDm5J2g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjynKDmh9xzum.diag
[2025-06-04 11:49:46] -rw-r--r-- 1 boincer umatlas     21183 Jun  4 11:49 stderr.txt
[2025-06-04 11:49:46] HITS file was successfully produced:
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas 201692888 Jun  4 11:49 shared/HITS.pool.root.1
[2025-06-04 11:49:46]  *** Contents of shared directory: ***
[2025-06-04 11:49:46] total 416508
[2025-06-04 11:49:46] -rw-r--r-- 2 boincer umatlas 223401875 Jun  4 10:17 ATLAS.root_0
[2025-06-04 11:49:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:17 start_atlas.sh
[2025-06-04 11:49:46] -rw-r--r-- 2 boincer umatlas    508887 Jun  4 10:17 input.tar.gz
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas 201692888 Jun  4 11:49 HITS.pool.root.1
[2025-06-04 11:49:46] -rw------- 1 boincer umatlas    870400 Jun  4 11:49 result.tar.gz
11:49:48 (98240): run_atlas exited; CPU time 37779.320669
11:49:48 (98240): called boinc_finish(0)

</stderr_txt>
]]>

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