Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
19:01:21 (16346): wrapper (7.7.26015): starting
19:01:21 (16346): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 19:01:21] Arguments: --nthreads 12
[2025-06-04 19:01:21] Threads: 12
[2025-06-04 19:01:21] Checking for CVMFS
[2025-06-04 19:01:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:01:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:01:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:01:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:01:43] 2.13.0.0 3172 163 30624 146788 3 1 2809061 4096001 0 130560 0 0 0.000 2583 1312 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 19:01:43] CVMFS is ok
[2025-06-04 19:01:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:01:43] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 19:01:43] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 19:01:43] Further information can be found at the LHC@home message board.
[2025-06-04 19:01:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:01:43] Checking for apptainer binary...
[2025-06-04 19:01:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:01:43] Running /usr/bin/apptainer --version
[2025-06-04 19:01:43] apptainer version 1.4.0
[2025-06-04 19:01:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:01:43] subzero
[2025-06-04 19:01:43] apptainer works
[2025-06-04 19:01:43] Set ATHENA_PROC_NUMBER=12
[2025-06-04 19:01:43] Set ATHENA_CORE_NUMBER=12
[2025-06-04 19:01:43] Starting ATLAS job with PandaID=6679417634
[2025-06-04 19:01:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/david/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 19:38:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 19:38:49]  is_tar=False
[2025-06-04 19:38:49]  lfn=log.45006595._056267.job.log.tgz.1
[2025-06-04 19:38:49]  mtime=0
[2025-06-04 19:38:49]  protocol_id=None
[2025-06-04 19:38:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 19:38:49]  replicas=None
[2025-06-04 19:38:49]  scope=mc23_13p6TeV
[2025-06-04 19:38:49]  status=None
[2025-06-04 19:38:49]  status_code=0
[2025-06-04 19:38:49]  storage_token=
[2025-06-04 19:38:49]  surl=/home/david/boinc/slots/0/PanDA_Pilot-6679417634/log.45006595._056267.job.log.tgz.1
[2025-06-04 19:38:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/35/log.45006595._056267.job.log.tgz.1
[2025-06-04 19:38:49]  workdir=None
[2025-06-04 19:38:49] ]
[2025-06-04 19:38:49] 2025-06-04 17:38:29,432 | INFO     | transferring file log.45006595._056267.job.log.tgz.1 from /home/david/boinc/slots/0/PanDA_Pilot-6679417634/log.45006595._056267.job.log.tgz.1 to /home/david/boinc/
[2025-06-04 19:38:49] 2025-06-04 17:38:29,432 | INFO     | executing command: /usr/bin/env mv /home/david/boinc/slots/0/PanDA_Pilot-6679417634/log.45006595._056267.job.log.tgz.1 /home/david/boinc/slots/0/log.45006595._0562
[2025-06-04 19:38:49] 2025-06-04 17:38:29,442 | INFO     | adding to output.list: log.45006595._056267.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/35/log.45006595._056267.job.log.tg
[2025-06-04 19:38:49] 2025-06-04 17:38:29,443 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 19:38:49] 2025-06-04 17:38:29,443 | INFO     | summary of transferred files:
[2025-06-04 19:38:49] 2025-06-04 17:38:29,443 | INFO     |  -- lfn=log.45006595._056267.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 19:38:49] 2025-06-04 17:38:29,443 | INFO     | stage-out finished correctly
[2025-06-04 19:38:49] 2025-06-04 17:38:31,700 | INFO     | monitor loop #174: job 0:6679417634 is in state 'finished'
[2025-06-04 19:38:49] 2025-06-04 17:38:31,700 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:38:49] 2025-06-04 17:38:32,629 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 19:38:49] 2025-06-04 17:38:33,493 | INFO     | PID=20103 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 19:38:49] 2025-06-04 17:38:34,203 | INFO     | monitor loop #175: job 0:6679417634 is in state 'finished'
[2025-06-04 19:38:49] 2025-06-04 17:38:34,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:38:49] 2025-06-04 17:38:34,608 | INFO     | job 6679417634 has state=finished
[2025-06-04 19:38:49] 2025-06-04 17:38:34,608 | INFO     | preparing for final server update for job 6679417634 in state='finished'
[2025-06-04 19:38:49] 2025-06-04 17:38:35,133 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 19:38:49] 2025-06-04 17:38:35,133 | INFO     | this job has now completed (state=finished)
[2025-06-04 19:38:49] 2025-06-04 17:38:35,133 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 19:38:49] 2025-06-04 17:38:35,133 | INFO     | log transfer has been attempted: DONE
[2025-06-04 19:38:49] 2025-06-04 17:38:35,133 | INFO     | job 6679417634 has finished - writing final server update
[2025-06-04 19:38:49] 2025-06-04 17:38:35,133 | INFO     | total number of processed events: 400 (read)
[2025-06-04 19:38:49] 2025-06-04 17:38:35,134 | INFO     | executing command: lscpu
[2025-06-04 19:38:49] 2025-06-04 17:38:35,150 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 19:38:49] 2025-06-04 17:38:36,706 | INFO     | monitor loop #176: job 0:6679417634 is in state 'finished'
[2025-06-04 19:38:49] 2025-06-04 17:38:36,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 19:38:49] 2025-06-04 17:38:37,233 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 19:38:49] 2025-06-04 17:38:37,234 | INFO     | using path: /home/david/boinc/slots/0/PanDA_Pilot-6679417634/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 19:38:49] 2025-06-04 17:38:37,234 | INFO     | extracted standard info from prmon json
[2025-06-04 19:38:49] 2025-06-04 17:38:37,234 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 19:38:49] 2025-06-04 17:38:37,234 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 19:38:49] 2025-06-04 17:38:37,234 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 19:38:49] 2025-06-04 17:38:37,234 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | fitting pss+swap vs Time
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | sum of square deviations: 7553630.0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | sum of deviations: -2354065274.0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | mean x: 1749057706.0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | mean y: 2857881.4137931033
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | -- intersect: 545091246896.5895
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | intersect: 545091246896.5895
[2025-06-04 19:38:49] 2025-06-04 17:38:37,235 | INFO     | chi2: 0.04601346612739846
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | -- intersect: 545091246896.5895
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | current memory leak: -311.65 B/s (using 29 data points, chi2=0.05)
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | ..............................
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . Timing measurements:
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . get job = 0 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . initial setup = 1 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . payload setup = 18 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . stage-in = 0 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . payload execution = 2160 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . stage-out = 0 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | . log creation = 0 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,236 | INFO     | ..............................
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | 
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | job summary report
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | --------------------------------------------------
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | PanDA job id: 6679417634
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | task id: 45006595
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | errors: (none)
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | pilot state: finished 
[2025-06-04 19:38:49] 2025-06-04 17:38:37,275 | INFO     | transexitcode: 0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | exeerrorcode: 0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | exeerrordiag: 
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | exitcode: 0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | exitmsg: OK
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | cpuconsumptiontime: 23132 s
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | nevents: 400
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | neventsw: 0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | pid: 26700
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | pgrp: 26700
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | corecount: 12
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | event service: False
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | sizes: {0: 2397289, 2: 2397495, 11: 2397523, 2182: 2422550, 2183: 2431497, 2186: 2431553, 2191: 2431851}
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | --------------------------------------------------
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | 
[2025-06-04 19:38:49] 2025-06-04 17:38:37,276 | INFO     | executing command: ls -lF /home/david/boinc/slots/0
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | job 6679417634 has completed (purged errors)
[2025-06-04 19:38:49] 2025-06-04 17:38:37,288 | INFO     | overall cleanup function is called
[2025-06-04 19:38:49] 2025-06-04 17:38:38,292 | INFO     | --- collectZombieJob: --- 10, [26700]
[2025-06-04 19:38:49] 2025-06-04 17:38:38,292 | INFO     | zombie collector waiting for pid 26700
[2025-06-04 19:38:49] 2025-06-04 17:38:38,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 19:38:49] 2025-06-04 17:38:38,292 | INFO     | collected zombie processes
[2025-06-04 19:38:49] 2025-06-04 17:38:38,292 | INFO     | will attempt to kill all subprocesses of pid=26700
[2025-06-04 19:38:49] 2025-06-04 17:38:38,377 | INFO     | process IDs to be killed: [26700] (in reverse order)
[2025-06-04 19:38:49] 2025-06-04 17:38:38,407 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 19:38:49] 2025-06-04 17:38:38,407 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 19:38:49] 2025-06-04 17:38:38,409 | INFO     | did not find any defunct processes belonging to 26700
[2025-06-04 19:38:49] 2025-06-04 17:38:38,411 | INFO     | did not find any defunct processes belonging to 26700
[2025-06-04 19:38:49] 2025-06-04 17:38:38,411 | INFO     | ready for new job
[2025-06-04 19:38:49] 2025-06-04 17:38:38,411 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 19:38:49] 2025-06-04 17:38:38,412 | INFO     | **************************************
[2025-06-04 19:38:49] 2025-06-04 17:38:38,412 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 19:38:49] 2025-06-04 17:38:38,412 | INFO     | **************************************
[2025-06-04 19:38:49] 2025-06-04 17:38:38,412 | INFO     | 
[2025-06-04 19:38:49] 2025-06-04 17:38:38,412 | INFO     | architecture information:
[2025-06-04 19:38:49] 2025-06-04 17:38:38,413 | INFO     | executing command: cat /etc/os-release
[2025-06-04 19:38:49] 2025-06-04 17:38:38,420 | INFO     | cat /etc/os-release:
[2025-06-04 19:38:49] NAME="CentOS Linux"
[2025-06-04 19:38:49] VERSION="7 (Core)"
[2025-06-04 19:38:49] ID="centos"
[2025-06-04 19:38:49] ID_LIKE="rhel fedora"
[2025-06-04 19:38:49] VERSION_ID="7"
[2025-06-04 19:38:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 19:38:49] ANSI_COLOR="0;31"
[2025-06-04 19:38:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 19:38:49] HOME_URL="https://www.centos.org/"
[2025-06-04 19:38:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 19:38:49] 
[2025-06-04 19:38:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 19:38:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 19:38:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 19:38:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 19:38:49] 
[2025-06-04 19:38:49] 2025-06-04 17:38:38,420 | INFO     | **************************************
[2025-06-04 19:38:49] 2025-06-04 17:38:38,923 | INFO     | executing command: df -mP /home/david/boinc/slots/0
[2025-06-04 19:38:49] 2025-06-04 17:38:38,931 | INFO     | sufficient remaining disk space (248586960896 B)
[2025-06-04 19:38:49] 2025-06-04 17:38:38,931 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 19:38:49] 2025-06-04 17:38:38,931 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 19:38:49] 2025-06-04 17:38:38,931 | INFO     | update_server=False
[2025-06-04 19:38:49] 2025-06-04 17:38:38,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 19:38:49] 2025-06-04 17:38:38,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:38:49] 2025-06-04 17:38:38,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 19:38:49] 2025-06-04 17:38:39,209 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 19:38:49] 2025-06-04 17:38:39,209 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 19:38:49] 2025-06-04 17:38:39,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:38:49] 2025-06-04 17:38:39,209 | INFO     | will abort loop
[2025-06-04 19:38:49] 2025-06-04 17:38:39,507 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 19:38:49] 2025-06-04 17:38:39,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 19:38:49] 2025-06-04 17:38:39,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 19:38:49] 2025-06-04 17:38:39,529 | INFO     | all data control threads have been joined
[2025-06-04 19:38:49] 2025-06-04 17:38:39,655 | INFO     | all job control threads have been joined
[2025-06-04 19:38:49] 2025-06-04 17:38:39,932 | INFO     | [job] retrieve thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:39,936 | INFO     | [job] queue monitor thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:39,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 19:38:49] 2025-06-04 17:38:40,052 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:40,214 | INFO     | [job] job monitor thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:40,347 | INFO     | [payload] validate_post thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:40,411 | INFO     | all payload control threads have been joined
[2025-06-04 19:38:49] 2025-06-04 17:38:40,534 | INFO     | [data] control thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:40,658 | INFO     | [job] control thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:40,704 | INFO     | [data] copytool_in thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:41,111 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:41,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:41,267 | INFO     | [job] validate thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:41,403 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:41,404 | INFO     | [payload] failed_post thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:41,412 | INFO     | [payload] control thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:42,001 | INFO     | [data] copytool_out thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:42,937 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 19:38:49] 2025-06-04 17:38:43,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140499930289984)>', '<ExcThread(monitor, started 140499444819712)>']
[2025-06-04 19:38:49] 2025-06-04 17:38:44,532 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 19:38:49] 2025-06-04 17:38:44,532 | INFO     | [monitor] control thread has ended
[2025-06-04 19:38:49] 2025-06-04 17:38:48,957 | INFO     | all workflow threads have been joined
[2025-06-04 19:38:49] 2025-06-04 17:38:48,957 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 19:38:49] 2025-06-04 17:38:48,957 | INFO     | traces error code: 0
[2025-06-04 19:38:49] 2025-06-04 17:38:48,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 19:38:49] 2025-06-04 17:38:49,005 [wrapper] ==== pilot stdout END ====
[2025-06-04 19:38:49] 2025-06-04 17:38:49,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 19:38:49] 2025-06-04 17:38:49,008 [wrapper] pilotpid: 20103
[2025-06-04 19:38:49] 2025-06-04 17:38:49,010 [wrapper] Pilot exit status: 0
[2025-06-04 19:38:49] 2025-06-04 17:38:49,017 [wrapper] pandaids: 6679417634
[2025-06-04 19:38:49] 2025-06-04 17:38:49,036 [wrapper] cleanup supervisor_pilot   35699 20104
[2025-06-04 19:38:49] 2025-06-04 17:38:49,037 [wrapper] Test setup, not cleaning
[2025-06-04 19:38:49] 2025-06-04 17:38:49,039 [wrapper] apfmon messages muted
[2025-06-04 19:38:49] 2025-06-04 17:38:49,041 [wrapper] ==== wrapper stdout END ====
[2025-06-04 19:38:49] 2025-06-04 17:38:49,042 [wrapper] ==== wrapper stderr END ====
[2025-06-04 19:38:49]  *** Error codes and diagnostics ***
[2025-06-04 19:38:49]     "exeErrorCode": 0,
[2025-06-04 19:38:49]     "exeErrorDiag": "",
[2025-06-04 19:38:49]     "pilotErrorCode": 0,
[2025-06-04 19:38:49]     "pilotErrorDiag": "",
[2025-06-04 19:38:49]  *** Listing of results directory ***
[2025-06-04 19:38:49] total 380008
[2025-06-04 19:38:49] -rw-r--r-- 1 david david    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-04 19:38:49] -rw-r--r-- 1 david david      5111 Jun  4 11:03 queuedata.json
[2025-06-04 19:38:49] -rwx------ 1 david david     37140 Jun  4 11:03 runpilot2-wrapper.sh
[2025-06-04 19:38:49] -rw-r--r-- 1 david david       100 Jun  4 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 19:38:49] -rwxr-xr-x 1 david david      7986 Jun  4 19:01 run_atlas
[2025-06-04 19:38:49] -rw-r--r-- 1 david david       105 Jun  4 19:01 job.xml
[2025-06-04 19:38:49] -rw-r--r-- 2 david david 214846397 Jun  4 19:01 EVNT.45006593._000102.pool.root.1
[2025-06-04 19:38:49] -rw-r--r-- 1 david david      7972 Jun  4 19:01 init_data.xml
[2025-06-04 19:38:49] drwxrwx--x 1 david david        76 Jun  4 19:01 shared
[2025-06-04 19:38:49] -rw-r--r-- 2 david david    508880 Jun  4 19:01 input.tar.gz
[2025-06-04 19:38:49] -rw-r--r-- 2 david david     15093 Jun  4 19:01 start_atlas.sh
[2025-06-04 19:38:49] -rw-r--r-- 1 david david         0 Jun  4 19:01 boinc_lockfile
[2025-06-04 19:38:49] -rw-r--r-- 1 david david      2522 Jun  4 19:01 pandaJob.out
[2025-06-04 19:38:49] -rw------- 1 david david    990984 Jun  4 19:01 agis_schedconf.cvmfs.json
[2025-06-04 19:38:49] -rw------- 1 david david   1598969 Jun  4 19:01 agis_ddmendpoints.agis.ALL.json
[2025-06-04 19:38:49] drwx------ 1 david david       368 Jun  4 19:01 pilot3
[2025-06-04 19:38:49] -rw------- 1 david david 169279484 Jun  4 19:38 HITS.45006595._056267.pool.root.1
[2025-06-04 19:38:49] -rw-r--r-- 1 david david       529 Jun  4 19:38 boinc_task_state.xml
[2025-06-04 19:38:49] -rw------- 1 david david        95 Jun  4 19:38 pilot_heartbeat.json
[2025-06-04 19:38:49] -rw------- 1 david david      1016 Jun  4 19:38 memory_monitor_summary.json
[2025-06-04 19:38:49] -rw------- 1 david david    348363 Jun  4 19:38 log.45006595._056267.job.log.tgz.1
[2025-06-04 19:38:49] -rw------- 1 david david      7649 Jun  4 19:38 heartbeat.json
[2025-06-04 19:38:49] -rw-r--r-- 1 david david      8192 Jun  4 19:38 boinc_mmap_file
[2025-06-04 19:38:49] -rw-r--r-- 1 david david        27 Jun  4 19:38 wrapper_checkpoint.txt
[2025-06-04 19:38:49] -rw------- 1 david david      4543 Jun  4 19:38 pilotlog.txt
[2025-06-04 19:38:49] -rw------- 1 david david    243183 Jun  4 19:38 log.45006595._056267.job.log.1
[2025-06-04 19:38:49] -rw------- 1 david david       357 Jun  4 19:38 output.list
[2025-06-04 19:38:49] -rw-r--r-- 1 david david       620 Jun  4 19:38 runtime_log
[2025-06-04 19:38:49] -rw------- 1 david david    614400 Jun  4 19:38 result.tar.gz
[2025-06-04 19:38:49] -rw------- 1 david david       640 Jun  4 19:38 UqdMDm4Czg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmq0aKDm8ah4Yn.diag
[2025-06-04 19:38:49] -rw-r--r-- 1 david david      8648 Jun  4 19:38 runtime_log.err
[2025-06-04 19:38:49] -rw-r--r-- 1 david david     21599 Jun  4 19:38 stderr.txt
[2025-06-04 19:38:49] HITS file was successfully produced:
[2025-06-04 19:38:49] -rw------- 1 david david 169279484 Jun  4 19:38 shared/HITS.pool.root.1
[2025-06-04 19:38:49]  *** Contents of shared directory: ***
[2025-06-04 19:38:49] total 376240
[2025-06-04 19:38:49] -rw-r--r-- 2 david david 214846397 Jun  4 19:01 ATLAS.root_0
[2025-06-04 19:38:49] -rw-r--r-- 2 david david    508880 Jun  4 19:01 input.tar.gz
[2025-06-04 19:38:49] -rw-r--r-- 2 david david     15093 Jun  4 19:01 start_atlas.sh
[2025-06-04 19:38:49] -rw------- 1 david david 169279484 Jun  4 19:38 HITS.pool.root.1
[2025-06-04 19:38:49] -rw------- 1 david david    614400 Jun  4 19:38 result.tar.gz
19:38:50 (16346): run_atlas exited; CPU time 23120.503567
19:38:50 (16346): called boinc_finish(0)

</stderr_txt>
]]>

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