Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:17:45 (2429575): wrapper (7.7.26015): starting
10:17:45 (2429575): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:17:45] Arguments: --nthreads 8
[2025-06-04 10:17:45] Threads: 8
[2025-06-04 10:17:45] Checking for CVMFS
[2025-06-04 10:17:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:17:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:17:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:17:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:17:45] 2.12.6.0 9858 31512 543516 146781 2 202 17495990 32935937 10241 16776704 1 143949635 99.677 120321387 23170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 10:17:45] CVMFS is ok
[2025-06-04 10:17:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:17:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:17:45] Further information can be found at the LHC@home message board.
[2025-06-04 10:17:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:17:45] Checking for apptainer binary...
[2025-06-04 10:17:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:17:45] Running /usr/bin/apptainer --version
[2025-06-04 10:17:45] apptainer version 1.4.1-1.el9
[2025-06-04 10:17:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:17:45] c6-2-11-2.aglt2.org
[2025-06-04 10:17:45] apptainer works
[2025-06-04 10:17:45] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:17:45] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:17:45] Starting ATLAS job with PandaID=6667923873
[2025-06-04 10:17:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:39:57]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:39:57]  filetype=log
[2025-06-04 11:39:57]  guid=aecdfcd3-7f40-4094-9455-4e833b8f32ab
[2025-06-04 11:39:57]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 11:39:57]  is_altstaged=None
[2025-06-04 11:39:57]  is_tar=False
[2025-06-04 11:39:57]  lfn=log.44871837._078059.job.log.tgz.1
[2025-06-04 11:39:57]  mtime=0
[2025-06-04 11:39:57]  protocol_id=None
[2025-06-04 11:39:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:39:57]  replicas=None
[2025-06-04 11:39:57]  scope=mc23_13p6TeV
[2025-06-04 11:39:57]  status=None
[2025-06-04 11:39:57]  status_code=0
[2025-06-04 11:39:57]  storage_token=
[2025-06-04 11:39:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667923873/log.44871837._078059.job.log.tgz.1
[2025-06-04 11:39:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/e9/log.44871837._078059.job.log.tgz.1
[2025-06-04 11:39:57]  workdir=None
[2025-06-04 11:39:57] ]
[2025-06-04 11:39:57] 2025-06-04 15:39:34,057 | INFO     | transferring file log.44871837._078059.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667923873/log.44871837._078059.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:39:57] 2025-06-04 15:39:34,057 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667923873/log.44871837._078059.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._078059.job
[2025-06-04 11:39:57] 2025-06-04 15:39:34,076 | INFO     | adding to output.list: log.44871837._078059.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/e9/log.44871837._078059.job.log.tg
[2025-06-04 11:39:57] 2025-06-04 15:39:34,077 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:39:57] 2025-06-04 15:39:34,077 | INFO     | summary of transferred files:
[2025-06-04 11:39:57] 2025-06-04 15:39:34,077 | INFO     |  -- lfn=log.44871837._078059.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:39:57] 2025-06-04 15:39:34,077 | INFO     | stage-out finished correctly
[2025-06-04 11:39:57] 2025-06-04 15:39:35,402 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:39:57] 2025-06-04 15:39:35,489 | INFO     | job 6667923873 has state=finished
[2025-06-04 11:39:57] 2025-06-04 15:39:35,490 | INFO     | preparing for final server update for job 6667923873 in state='finished'
[2025-06-04 11:39:57] 2025-06-04 15:39:35,491 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:39:57] 2025-06-04 15:39:35,491 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:39:57] 2025-06-04 15:39:35,491 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:39:57] 2025-06-04 15:39:35,491 | INFO     | job 6667923873 has finished - writing final server update
[2025-06-04 11:39:57] 2025-06-04 15:39:35,491 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:39:57] 2025-06-04 15:39:35,509 | INFO     | executing command: lscpu
[2025-06-04 11:39:57] 2025-06-04 15:39:35,598 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:39:57] 2025-06-04 15:39:37,403 | WARNING  | process 2441724 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 11:39:57] 2025-06-04 15:39:37,404 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667923873/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:39:57] 2025-06-04 15:39:37,721 | INFO     | number of running child processes to parent process 2441724: 1
[2025-06-04 11:39:57] 2025-06-04 15:39:37,722 | INFO     | maximum number of monitored processes: 6
[2025-06-04 11:39:57] 2025-06-04 15:39:38,378 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:39:57] 2025-06-04 15:39:38,379 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667923873/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:39:57] 2025-06-04 15:39:38,379 | INFO     | extracted standard info from prmon json
[2025-06-04 11:39:57] 2025-06-04 15:39:38,380 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:39:57] 2025-06-04 15:39:38,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:39:57] 2025-06-04 15:39:38,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:39:57] 2025-06-04 15:39:38,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:39:57] 2025-06-04 15:39:38,382 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:39:57] 2025-06-04 15:39:38,382 | INFO     | sum of square deviations: 120605052.0
[2025-06-04 11:39:57] 2025-06-04 15:39:38,383 | INFO     | sum of deviations: 5450745768.000001
[2025-06-04 11:39:57] 2025-06-04 15:39:38,383 | INFO     | mean x: 1749049198.0
[2025-06-04 11:39:57] 2025-06-04 15:39:38,383 | INFO     | mean y: 2175761.0547945206
[2025-06-04 11:39:57] 2025-06-04 15:39:38,383 | INFO     | -- intersect: -79046109165.03848
[2025-06-04 11:39:57] 2025-06-04 15:39:38,383 | INFO     | intersect: -79046109165.03848
[2025-06-04 11:39:57] 2025-06-04 15:39:38,383 | INFO     | chi2: 0.6620495743300108
[2025-06-04 11:39:57] 2025-06-04 15:39:38,383 | INFO     | -- intersect: -79046109165.03848
[2025-06-04 11:39:57] 2025-06-04 15:39:38,384 | INFO     | current memory leak: 45.20 B/s (using 73 data points, chi2=0.66)
[2025-06-04 11:39:57] 2025-06-04 15:39:38,384 | INFO     | ..............................
[2025-06-04 11:39:57] 2025-06-04 15:39:38,384 | INFO     | . Timing measurements:
[2025-06-04 11:39:57] 2025-06-04 15:39:38,384 | INFO     | . get job = 0 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,384 | INFO     | . initial setup = 2 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,384 | INFO     | . payload setup = 5 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,384 | INFO     | . stage-in = 0 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,385 | INFO     | . payload execution = 4876 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,385 | INFO     | . stage-out = 0 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,385 | INFO     | . log creation = 0 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,385 | INFO     | ..............................
[2025-06-04 11:39:57] 2025-06-04 15:39:38,712 | INFO     | 
[2025-06-04 11:39:57] 2025-06-04 15:39:38,712 | INFO     | job summary report
[2025-06-04 11:39:57] 2025-06-04 15:39:38,712 | INFO     | --------------------------------------------------
[2025-06-04 11:39:57] 2025-06-04 15:39:38,712 | INFO     | PanDA job id: 6667923873
[2025-06-04 11:39:57] 2025-06-04 15:39:38,712 | INFO     | task id: 44871837
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | errors: (none)
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | pilot state: finished 
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | transexitcode: 0
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | exeerrorcode: 0
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | exeerrordiag: 
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | exitcode: 0
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | exitmsg: OK
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | cpuconsumptiontime: 34073 s
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | nevents: 400
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | neventsw: 0
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | pid: 2441724
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | pgrp: 2441724
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | corecount: 8
[2025-06-04 11:39:57] 2025-06-04 15:39:38,713 | INFO     | event service: False
[2025-06-04 11:39:57] 2025-06-04 15:39:38,714 | INFO     | sizes: {0: 2396513, 1: 2397369, 4: 2397575, 12: 2397603, 4884: 2423811, 4885: 2432752, 4887: 2432936, 4890: 2433106}
[2025-06-04 11:39:57] 2025-06-04 15:39:38,714 | INFO     | --------------------------------------------------
[2025-06-04 11:39:57] 2025-06-04 15:39:38,714 | INFO     | 
[2025-06-04 11:39:57] 2025-06-04 15:39:38,714 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:39:57] 2025-06-04 15:39:38,729 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,730 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:39:57] 2025-06-04 15:39:38,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,731 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:39:57] 2025-06-04 15:39:38,731 | INFO     | job 6667923873 has completed (purged errors)
[2025-06-04 11:39:57] 2025-06-04 15:39:38,731 | INFO     | overall cleanup function is called
[2025-06-04 11:39:57] 2025-06-04 15:39:39,736 | INFO     | --- collectZombieJob: --- 10, [2441724]
[2025-06-04 11:39:57] 2025-06-04 15:39:39,736 | INFO     | zombie collector waiting for pid 2441724
[2025-06-04 11:39:57] 2025-06-04 15:39:39,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:39:57] 2025-06-04 15:39:39,736 | INFO     | collected zombie processes
[2025-06-04 11:39:57] 2025-06-04 15:39:39,736 | INFO     | will attempt to kill all subprocesses of pid=2441724
[2025-06-04 11:39:57] 2025-06-04 15:39:39,983 | INFO     | process IDs to be killed: [2441724] (in reverse order)
[2025-06-04 11:39:57] 2025-06-04 15:39:40,043 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:39:57] 2025-06-04 15:39:40,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:39:57] 2025-06-04 15:39:40,056 | INFO     | did not find any defunct processes belonging to 2441724
[2025-06-04 11:39:57] 2025-06-04 15:39:40,067 | INFO     | did not find any defunct processes belonging to 2441724
[2025-06-04 11:39:57] 2025-06-04 15:39:40,068 | INFO     | ready for new job
[2025-06-04 11:39:57] 2025-06-04 15:39:40,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:39:57] 2025-06-04 15:39:40,070 | INFO     | **************************************
[2025-06-04 11:39:57] 2025-06-04 15:39:40,070 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:39:57] 2025-06-04 15:39:40,070 | INFO     | **************************************
[2025-06-04 11:39:57] 2025-06-04 15:39:40,070 | INFO     | 
[2025-06-04 11:39:57] 2025-06-04 15:39:40,087 | INFO     | architecture information:
[2025-06-04 11:39:57] 2025-06-04 15:39:40,087 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:39:57] 2025-06-04 15:39:40,101 | INFO     | cat /etc/os-release:
[2025-06-04 11:39:57] NAME="CentOS Linux"
[2025-06-04 11:39:57] VERSION="7 (Core)"
[2025-06-04 11:39:57] ID="centos"
[2025-06-04 11:39:57] ID_LIKE="rhel fedora"
[2025-06-04 11:39:57] VERSION_ID="7"
[2025-06-04 11:39:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:39:57] ANSI_COLOR="0;31"
[2025-06-04 11:39:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:39:57] HOME_URL="https://www.centos.org/"
[2025-06-04 11:39:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:39:57] 
[2025-06-04 11:39:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:39:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:39:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:39:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:39:57] 
[2025-06-04 11:39:57] 2025-06-04 15:39:40,101 | INFO     | **************************************
[2025-06-04 11:39:57] 2025-06-04 15:39:40,498 | INFO     | 4909s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 11:39:57] 2025-06-04 15:39:40,604 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:39:57] 2025-06-04 15:39:40,622 | INFO     | sufficient remaining disk space (95689900032 B)
[2025-06-04 11:39:57] 2025-06-04 15:39:40,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:39:57] 2025-06-04 15:39:40,623 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:39:57] 2025-06-04 15:39:40,623 | INFO     | update_server=False
[2025-06-04 11:39:57] 2025-06-04 15:39:40,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:39:57] 2025-06-04 15:39:40,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:39:57] 2025-06-04 15:39:40,891 | INFO     | all job control threads have been joined
[2025-06-04 11:39:57] 2025-06-04 15:39:41,076 | INFO     | all payload control threads have been joined
[2025-06-04 11:39:57] 2025-06-04 15:39:41,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:39:57] 2025-06-04 15:39:41,231 | INFO     | aborting loop
[2025-06-04 11:39:57] 2025-06-04 15:39:41,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:39:57] 2025-06-04 15:39:41,503 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:39:57] 2025-06-04 15:39:41,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:39:57] 2025-06-04 15:39:41,504 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:39:57] 2025-06-04 15:39:41,628 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:41,653 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:41,679 | INFO     | all data control threads have been joined
[2025-06-04 11:39:57] 2025-06-04 15:39:41,859 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:41,896 | INFO     | [job] control thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,081 | INFO     | [payload] control thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,129 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,236 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,629 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,684 | INFO     | [data] control thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,685 | INFO     | [job] validate thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,852 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:42,893 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:43,168 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:43,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:39:57] 2025-06-04 15:39:44,492 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:45,501 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:51,402 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:39:57] 2025-06-04 15:39:52,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:39:57] 2025-06-04 15:39:52,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139624529246016)>', '<ExcThread(monitor, started 139623590250240)>']
[2025-06-04 11:39:57] 2025-06-04 15:39:53,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:39:57] 2025-06-04 15:39:53,560 | INFO     | [monitor] control thread has ended
[2025-06-04 11:39:57] 2025-06-04 15:39:57,586 | INFO     | all workflow threads have been joined
[2025-06-04 11:39:57] 2025-06-04 15:39:57,587 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:39:57] 2025-06-04 15:39:57,587 | INFO     | traces error code: 0
[2025-06-04 11:39:57] 2025-06-04 15:39:57,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:39:57] 2025-06-04 15:39:57,749 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:39:57] 2025-06-04 15:39:57,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:39:57] 2025-06-04 15:39:57,753 [wrapper] pilotpid: 2435082
[2025-06-04 11:39:57] 2025-06-04 15:39:57,755 [wrapper] Pilot exit status: 0
[2025-06-04 11:39:57] 2025-06-04 15:39:57,764 [wrapper] pandaids: 6667923873
[2025-06-04 11:39:57] 2025-06-04 15:39:57,827 [wrapper] cleanup supervisor_pilot 2659978 2435083
[2025-06-04 11:39:57] 2025-06-04 15:39:57,829 [wrapper] Test setup, not cleaning
[2025-06-04 11:39:57] 2025-06-04 15:39:57,831 [wrapper] apfmon messages muted
[2025-06-04 11:39:57] 2025-06-04 15:39:57,833 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:39:57] 2025-06-04 15:39:57,834 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:39:57]  *** Error codes and diagnostics ***
[2025-06-04 11:39:57]     "exeErrorCode": 0,
[2025-06-04 11:39:57]     "exeErrorDiag": "",
[2025-06-04 11:39:57]     "pilotErrorCode": 0,
[2025-06-04 11:39:57]     "pilotErrorDiag": "",
[2025-06-04 11:39:57]  *** Listing of results directory ***
[2025-06-04 11:39:57] total 421848
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas    495897 May 27 22:39 pilot3.tar.gz
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas      5111 May 27 23:17 queuedata.json
[2025-06-04 11:39:57] -rwx------. 1 boincer umatlas     37140 May 27 23:17 runpilot2-wrapper.sh
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas       100 Jun  4 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:39:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 10:17 run_atlas
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas       105 Jun  4 10:17 job.xml
[2025-06-04 11:39:57] -rw-r--r--. 2 boincer umatlas 225433864 Jun  4 10:17 EVNT.44871834._003051.pool.root.1
[2025-06-04 11:39:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:17 start_atlas.sh
[2025-06-04 11:39:57] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 10:17 shared
[2025-06-04 11:39:57] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 10:17 input.tar.gz
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas         0 Jun  4 10:17 boinc_lockfile
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas      2558 Jun  4 10:17 pandaJob.out
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas    986819 Jun  4 10:17 agis_schedconf.cvmfs.json
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas   1598969 Jun  4 10:17 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:39:57] drwx------. 4 boincer umatlas      4096 Jun  4 10:17 pilot3
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas      6856 Jun  4 11:28 init_data.xml
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas 201123291 Jun  4 11:39 HITS.44871837._078059.pool.root.1
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas       529 Jun  4 11:39 boinc_task_state.xml
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas      1038 Jun  4 11:39 memory_monitor_summary.json
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas    315695 Jun  4 11:39 log.44871837._078059.job.log.tgz.1
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 11:39 boinc_mmap_file
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas        95 Jun  4 11:39 pilot_heartbeat.json
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas        27 Jun  4 11:39 wrapper_checkpoint.txt
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas      7722 Jun  4 11:39 heartbeat.json
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas      4540 Jun  4 11:39 pilotlog.txt
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas    479023 Jun  4 11:39 log.44871837._078059.job.log.1
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas       357 Jun  4 11:39 output.list
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas       620 Jun  4 11:39 runtime_log
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas    808960 Jun  4 11:39 result.tar.gz
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas      8664 Jun  4 11:39 runtime_log.err
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas       652 Jun  4 11:39 jnOMDmsTMe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk9aKDmWps8Jm.diag
[2025-06-04 11:39:57] -rw-r--r--. 1 boincer umatlas     21220 Jun  4 11:39 stderr.txt
[2025-06-04 11:39:57] HITS file was successfully produced:
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas 201123291 Jun  4 11:39 shared/HITS.pool.root.1
[2025-06-04 11:39:57]  *** Contents of shared directory: ***
[2025-06-04 11:39:57] total 417876
[2025-06-04 11:39:57] -rw-r--r--. 2 boincer umatlas 225433864 Jun  4 10:17 ATLAS.root_0
[2025-06-04 11:39:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:17 start_atlas.sh
[2025-06-04 11:39:57] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 10:17 input.tar.gz
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas 201123291 Jun  4 11:39 HITS.pool.root.1
[2025-06-04 11:39:57] -rw-------. 1 boincer umatlas    808960 Jun  4 11:39 result.tar.gz
11:39:59 (2429575): run_atlas exited; CPU time 34238.811381
11:39:59 (2429575): called boinc_finish(0)

</stderr_txt>
]]>

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